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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF SCHISTOSOMA MANSONI HDAC8 COMPLEXED WIT
Keywords HYDROLASE, PLATYHELMINTHS, INHIBITION
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4BZ7     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HISTONE DEACETYLASE 8  A 399 3193 0
2  Protein   HISTONE DEACETYLASE 8  B 413 3291 0
3  Protein   HISTONE DEACETYLASE 8  C 416 3317 0
4  Protein   HISTONE DEACETYLASE 8  D 399 3193 0
5  Ligand   HISTONE DEACETYLASE 8  A 8 0 65
6  Ligand   HISTONE DEACETYLASE 8  B 8 0 65
7  Ligand   HISTONE DEACETYLASE 8  C 9 0 71
8  Ligand   HISTONE DEACETYLASE 8  D 9 0 71
9 Water     1171 0 1171
total       2832 12994 1443
Proteins
Unit 1 SER2 VAL3 GLY4 ILE5 VAL6 TYR7 GLY8 ASP9 GLN10 TYR11 ARG12 GLN13 LEU14 CYS15 CYS16 SER17 SER18 PRO19 LYS20 PHE21 GLY22 ASP23 ARG24 TYR25 ALA26 LEU27 VAL28 MET29 ASP30 LEU31 ILE32 ASN33 ALA34 TYR35 LYS36 LEU37 ILE38 PRO39 GLU40 LEU41 SER42 ARG43 VAL44 PRO45 PRO46 LEU47 GLN48 TRP49 ASP50 SER51 PRO52 SER53 ARG54 MET55 TYR56 GLU57 ALA58 VAL59 THR60 ALA61 PHE62 HIS63 SER64 THR65 GLU66 TYR67 VAL68 ASP69 ALA70 LEU71 LYS72 LYS73 LEU74 GLN75 MET76 LEU77 HIS78 CYS79 GLU80 GLU81 LYS82 GLU83 LEU84 THR85 ALA86 ASP87 ASP88 GLU89 LEU90 LEU91 MET92 ASP93 SER94 PHE95 SER96 LEU97 ASN98 TYR99 ASP100 CYS101 PRO102 GLY103 PHE104 PRO105 SER106 VAL107 PHE108 ASP109 TYR110 SER111 LEU112 ALA113 ALA114 VAL115 GLN116 GLY117 SER118 LEU119 ALA120 ALA121 ALA122 SER123 ALA124 LEU125 ILE126 CYS127 ARG128 HIS129 CYS130 GLU131 VAL132 VAL133 ILE134 ASN135 TRP136 GLY137 GLY138 GLY139 TRP140 HIS141 HIS142 ALA143 LYS144 ARG145 SER146 GLU147 ALA148 SER149 GLY150 PHE151 CYS152 TYR153 LEU154 ASN155 ASP156 ILE157 VAL158 LEU159 ALA160 ILE161 HIS162 ARG163 LEU164 VAL165 SER166 SER167 THR168 PRO169 GLN177 THR178 ARG179 VAL180 LEU181 TYR182 VAL183 ASP184 LEU185 ASP186 LEU187 HIS188 HIS189 GLY190 ASP191 GLY192 VAL193 GLU194 GLU195 ALA196 PHE197 TRP198 TYR199 SER200 PRO201 ARG202 VAL203 VAL204 THR205 PHE206 SER207 VAL208 HIS209 HIS210 ALA211 SER212 PRO213 GLY214 PHE215 PHE216 PRO217 GLY218 THR219 GLY220 THR221 TRP222 ASN223 ILE232 PHE233 LEU234 ASN235 GLY236 ALA237 GLY238 ARG239 GLY240 ARG241 PHE242 SER243 ALA244 PHE245 ASN246 LEU247 PRO248 LEU249 GLU250 GLU251 GLY252 ILE253 ASN254 ASP255 LEU256 ASP257 TRP258 SER259 ASN260 ALA261 ILE262 GLY263 PRO264 ILE265 LEU266 ASP267 SER268 LEU269 ASN270 ILE271 VAL272 ILE273 GLN274 PRO275 SER276 TYR277 VAL278 VAL279 VAL280 GLN281 CYS282 GLY283 ALA284 ASP285 CYS286 LEU287 ALA288 THR289 ASP290 PRO291 HIS292 ARG293 ILE294 PHE295 ARG296 LEU297 THR298 ASN299 PHE300 TYR301 PRO302 SER315 LEU316 SER317 GLY318 TYR319 LEU320 TYR321 ALA322 ILE323 LYS324 LYS325 ILE326 LEU327 SER328 TRP329 LYS330 VAL331 PRO332 THR333 LEU334 ILE335 LEU336 GLY337 GLY338 GLY339 GLY340 TYR341 ASN342 PHE343 PRO344 ASP345 THR346 ALA347 ARG348 LEU349 TRP350 THR351 ARG352 VAL353 THR354 ALA355 LEU356 THR357 ILE358 GLU359 GLU360 VAL361 LYS362 GLY363 LYS364 LYS365 MET366 THR367 ILE368 SER369 PRO370 GLU371 ILE372 PRO373 GLU374 HIS375 SER376 TYR377 PHE378 SER379 ARG380 TYR381 GLY382 PRO383 ASP384 PHE385 GLU386 LEU387 ASP388 ILE389 ASP390 TYR391 PHE392 PRO393 ASP402 SER403 ILE404 GLN405 LYS406 HIS407 HIS408 ARG409 ARG410 ILE411 LEU412 GLU413 GLN414 LEU415 ARG416 ASN417 TYR418 ALA419 ASP420 LEU421 ASN422 LYS423 LEU424 ILE425 TYR426 ASP427 TYR428 ASP429 GLN430 VAL431 TYR432 GLN433 LEU434 TYR435
Unit 2 SER2 VAL3 GLY4 ILE5 VAL6 TYR7 GLY8 ASP9 GLN10 TYR11 ARG12 GLN13 LEU14 CYS15 CYS16 SER17 SER18 PRO19 LYS20 PHE21 GLY22 ASP23 ARG24 TYR25 ALA26 LEU27 VAL28 MET29 ASP30 LEU31 ILE32 ASN33 ALA34 TYR35 LYS36 LEU37 ILE38 PRO39 GLU40 LEU41 SER42 ARG43 VAL44 PRO45 PRO46 LEU47 GLN48 TRP49 ASP50 SER51 PRO52 SER53 ARG54 MET55 TYR56 GLU57 ALA58 VAL59 THR60 ALA61 PHE62 HIS63 SER64 THR65 GLU66 TYR67 VAL68 ASP69 ALA70 LEU71 LYS72 LYS73 LEU74 GLN75 MET76 LEU77 HIS78 CYS79 GLU80 LEU84 THR85 ALA86 ASP87 ASP88 GLU89 LEU90 LEU91 MET92 ASP93 SER94 PHE95 SER96 LEU97 ASN98 TYR99 ASP100 CYS101 PRO102 GLY103 PHE104 PRO105 SER106 VAL107 PHE108 ASP109 TYR110 SER111 LEU112 ALA113 ALA114 VAL115 GLN116 GLY117 SER118 LEU119 ALA120 ALA121 ALA122 SER123 ALA124 LEU125 ILE126 CYS127 ARG128 HIS129 CYS130 GLU131 VAL132 VAL133 ILE134 ASN135 TRP136 GLY137 GLY138 GLY139 TRP140 HIS141 HIS142 ALA143 LYS144 ARG145 SER146 GLU147 ALA148 SER149 GLY150 PHE151 CYS152 TYR153 LEU154 ASN155 ASP156 ILE157 VAL158 LEU159 ALA160 ILE161 HIS162 ARG163 LEU164 VAL165 SER166 SER167 GLN177 THR178 ARG179 VAL180 LEU181 TYR182 VAL183 ASP184 LEU185 ASP186 LEU187 HIS188 HIS189 GLY190 ASP191 GLY192 VAL193 GLU194 GLU195 ALA196 PHE197 TRP198 TYR199 SER200 PRO201 ARG202 VAL203 VAL204 THR205 PHE206 SER207 VAL208 HIS209 HIS210 ALA211 SER212 PRO213 GLY214 PHE215 PHE216 PRO217 GLY218 THR219 GLY220 THR221 TRP222 ASN223 LEU230 PRO231 ILE232 PHE233 LEU234 ASN235 GLY236 ALA237 GLY238 ARG239 GLY240 ARG241 PHE242 SER243 ALA244 PHE245 ASN246 LEU247 PRO248 LEU249 GLU250 GLU251 GLY252 ILE253 ASN254 ASP255 LEU256 ASP257 TRP258 SER259 ASN260 ALA261 ILE262 GLY263 PRO264 ILE265 LEU266 ASP267 SER268 LEU269 ASN270 ILE271 VAL272 ILE273 GLN274 PRO275 SER276 TYR277 VAL278 VAL279 VAL280 GLN281 CYS282 GLY283 ALA284 ASP285 CYS286 LEU287 ALA288 THR289 ASP290 PRO291 HIS292 ARG293 ILE294 PHE295 ARG296 LEU297 THR298 ASN299 PHE300 TYR301 PRO302 SER312 GLU313 CYS314 SER315 LEU316 SER317 GLY318 TYR319 LEU320 TYR321 ALA322 ILE323 LYS324 LYS325 ILE326 LEU327 SER328 TRP329 LYS330 VAL331 PRO332 THR333 LEU334 ILE335 LEU336 GLY337 GLY338 GLY339 GLY340 TYR341 ASN342 PHE343 PRO344 ASP345 THR346 ALA347 ARG348 LEU349 TRP350 THR351 ARG352 VAL353 THR354 ALA355 LEU356 THR357 ILE358 GLU359 GLU360 VAL361 LYS362 GLY363 LYS364 LYS365 MET366 THR367 ILE368 SER369 PRO370 GLU371 ILE372 PRO373 GLU374 HIS375 SER376 TYR377 PHE378 SER379 ARG380 TYR381 GLY382 PRO383 ASP384 PHE385 GLU386 LEU387 ASP388 ILE389 ASP390 TYR391 PHE392 PRO393 HIS394 THR400 LEU401 ASP402 SER403 ILE404 GLN405 LYS406 HIS407 HIS408 ARG409 ARG410 ILE411 LEU412 GLU413 GLN414 LEU415 ARG416 ASN417 TYR418 ALA419 ASP420 LEU421 ASN422 LYS423 LEU424 ILE425 TYR426 ASP427 TYR428 ASP429 GLN430 VAL431 TYR432 GLN433 LEU434 TYR435 ASN436 LEU437 THR438 GLY439 MET440 GLY441 SER442 LEU443 VAL444 PRO445 ARG446
Unit 3 SER2 VAL3 GLY4 ILE5 VAL6 TYR7 GLY8 ASP9 GLN10 TYR11 ARG12 GLN13 LEU14 CYS15 CYS16 SER17 SER18 PRO19 LYS20 PHE21 GLY22 ASP23 ARG24 TYR25 ALA26 LEU27 VAL28 MET29 ASP30 LEU31 ILE32 ASN33 ALA34 TYR35 LYS36 LEU37 ILE38 PRO39 GLU40 LEU41 SER42 ARG43 VAL44 PRO45 PRO46 LEU47 GLN48 TRP49 ASP50 SER51 PRO52 SER53 ARG54 MET55 TYR56 GLU57 ALA58 VAL59 THR60 ALA61 PHE62 HIS63 SER64 THR65 GLU66 TYR67 VAL68 ASP69 ALA70 LEU71 LYS72 LYS73 LEU74 GLN75 MET76 LEU77 HIS78 CYS79 GLU80 GLU83 LEU84 THR85 ALA86 ASP87 ASP88 GLU89 LEU90 LEU91 MET92 ASP93 SER94 PHE95 SER96 LEU97 ASN98 TYR99 ASP100 CYS101 PRO102 GLY103 PHE104 PRO105 SER106 VAL107 PHE108 ASP109 TYR110 SER111 LEU112 ALA113 ALA114 VAL115 GLN116 GLY117 SER118 LEU119 ALA120 ALA121 ALA122 SER123 ALA124 LEU125 ILE126 CYS127 ARG128 HIS129 CYS130 GLU131 VAL132 VAL133 ILE134 ASN135 TRP136 GLY137 GLY138 GLY139 TRP140 HIS141 HIS142 ALA143 LYS144 ARG145 SER146 GLU147 ALA148 SER149 GLY150 PHE151 CYS152 TYR153 LEU154 ASN155 ASP156 ILE157 VAL158 LEU159 ALA160 ILE161 HIS162 ARG163 LEU164 VAL165 SER166 SER167 THR178 ARG179 VAL180 LEU181 TYR182 VAL183 ASP184 LEU185 ASP186 LEU187 HIS188 HIS189 GLY190 ASP191 GLY192 VAL193 GLU194 GLU195 ALA196 PHE197 TRP198 TYR199 SER200 PRO201 ARG202 VAL203 VAL204 THR205 PHE206 SER207 VAL208 HIS209 HIS210 ALA211 SER212 PRO213 GLY214 PHE215 PHE216 PRO217 GLY218 THR219 GLY220 THR221 TRP222 ASN223 MET224 LYS229 LEU230 PRO231 ILE232 PHE233 LEU234 ASN235 GLY236 ALA237 GLY238 ARG239 GLY240 ARG241 PHE242 SER243 ALA244 PHE245 ASN246 LEU247 PRO248 LEU249 GLU250 GLU251 GLY252 ILE253 ASN254 ASP255 LEU256 ASP257 TRP258 SER259 ASN260 ALA261 ILE262 GLY263 PRO264 ILE265 LEU266 ASP267 SER268 LEU269 ASN270 ILE271 VAL272 ILE273 GLN274 PRO275 SER276 TYR277 VAL278 VAL279 VAL280 GLN281 CYS282 GLY283 ALA284 ASP285 CYS286 LEU287 ALA288 THR289 ASP290 PRO291 HIS292 ARG293 ILE294 PHE295 ARG296 LEU297 THR298 ASN299 PHE300 TYR301 PRO302 SER312 GLU313 CYS314 SER315 LEU316 SER317 GLY318 TYR319 LEU320 TYR321 ALA322 ILE323 LYS324 LYS325 ILE326 LEU327 SER328 TRP329 LYS330 VAL331 PRO332 THR333 LEU334 ILE335 LEU336 GLY337 GLY338 GLY339 GLY340 TYR341 ASN342 PHE343 PRO344 ASP345 THR346 ALA347 ARG348 LEU349 TRP350 THR351 ARG352 VAL353 THR354 ALA355 LEU356 THR357 ILE358 GLU359 GLU360 VAL361 LYS362 GLY363 LYS364 LYS365 MET366 THR367 ILE368 SER369 PRO370 GLU371 ILE372 PRO373 GLU374 HIS375 SER376 TYR377 PHE378 SER379 ARG380 TYR381 GLY382 PRO383 ASP384 PHE385 GLU386 LEU387 ASP388 ILE389 ASP390 TYR391 PHE392 PRO393 HIS394 GLU395 THR400 LEU401 ASP402 SER403 ILE404 GLN405 LYS406 HIS407 HIS408 ARG409 ARG410 ILE411 LEU412 GLU413 GLN414 LEU415 ARG416 ASN417 TYR418 ALA419 ASP420 LEU421 ASN422 LYS423 LEU424 ILE425 TYR426 ASP427 TYR428 ASP429 GLN430 VAL431 TYR432 GLN433 LEU434 TYR435 ASN436 LEU437 THR438 GLY439 MET440 GLY441 SER442 LEU443 VAL444 PRO445 ARG446
Unit 4 SER2 VAL3 GLY4 ILE5 VAL6 TYR7 GLY8 ASP9 GLN10 TYR11 ARG12 GLN13 LEU14 CYS15 CYS16 SER17 SER18 PRO19 LYS20 PHE21 GLY22 ASP23 ARG24 TYR25 ALA26 LEU27 VAL28 MET29 ASP30 LEU31 ILE32 ASN33 ALA34 TYR35 LYS36 LEU37 ILE38 PRO39 GLU40 LEU41 SER42 ARG43 VAL44 PRO45 PRO46 LEU47 GLN48 TRP49 ASP50 SER51 PRO52 SER53 ARG54 MET55 TYR56 GLU57 ALA58 VAL59 THR60 ALA61 PHE62 HIS63 SER64 THR65 GLU66 TYR67 VAL68 ASP69 ALA70 LEU71 LYS72 LYS73 LEU74 GLN75 MET76 LEU77 HIS78 CYS79 GLU80 GLU81 LYS82 GLU83 LEU84 THR85 ALA86 ASP87 ASP88 GLU89 LEU90 LEU91 MET92 ASP93 SER94 PHE95 SER96 LEU97 ASN98 TYR99 ASP100 CYS101 PRO102 GLY103 PHE104 PRO105 SER106 VAL107 PHE108 ASP109 TYR110 SER111 LEU112 ALA113 ALA114 VAL115 GLN116 GLY117 SER118 LEU119 ALA120 ALA121 ALA122 SER123 ALA124 LEU125 ILE126 CYS127 ARG128 HIS129 CYS130 GLU131 VAL132 VAL133 ILE134 ASN135 TRP136 GLY137 GLY138 GLY139 TRP140 HIS141 HIS142 ALA143 LYS144 ARG145 SER146 GLU147 ALA148 SER149 GLY150 PHE151 CYS152 TYR153 LEU154 ASN155 ASP156 ILE157 VAL158 LEU159 ALA160 ILE161 HIS162 ARG163 LEU164 VAL165 SER166 SER167 THR168 GLN177 THR178 ARG179 VAL180 LEU181 TYR182 VAL183 ASP184 LEU185 ASP186 LEU187 HIS188 HIS189 GLY190 ASP191 GLY192 VAL193 GLU194 GLU195 ALA196 PHE197 TRP198 TYR199 SER200 PRO201 ARG202 VAL203 VAL204 THR205 PHE206 SER207 VAL208 HIS209 HIS210 ALA211 SER212 PRO213 GLY214 PHE215 PHE216 PRO217 GLY218 THR219 GLY220 THR221 TRP222 ASN223 PRO231 ILE232 PHE233 LEU234 ASN235 GLY236 ALA237 GLY238 ARG239 GLY240 ARG241 PHE242 SER243 ALA244 PHE245 ASN246 LEU247 PRO248 LEU249 GLU250 GLU251 GLY252 ILE253 ASN254 ASP255 LEU256 ASP257 TRP258 SER259 ASN260 ALA261 ILE262 GLY263 PRO264 ILE265 LEU266 ASP267 SER268 LEU269 ASN270 ILE271 VAL272 ILE273 GLN274 PRO275 SER276 TYR277 VAL278 VAL279 VAL280 GLN281 CYS282 GLY283 ALA284 ASP285 CYS286 LEU287 ALA288 THR289 ASP290 PRO291 HIS292 ARG293 ILE294 PHE295 ARG296 LEU297 THR298 ASN299 PHE300 TYR301 PRO302 SER315 LEU316 SER317 GLY318 TYR319 LEU320 TYR321 ALA322 ILE323 LYS324 LYS325 ILE326 LEU327 SER328 TRP329 LYS330 VAL331 PRO332 THR333 LEU334 ILE335 LEU336 GLY337 GLY338 GLY339 GLY340 TYR341 ASN342 PHE343 PRO344 ASP345 THR346 ALA347 ARG348 LEU349 TRP350 THR351 ARG352 VAL353 THR354 ALA355 LEU356 THR357 ILE358 GLU359 GLU360 VAL361 LYS362 GLY363 LYS364 LYS365 MET366 THR367 ILE368 SER369 PRO370 GLU371 ILE372 PRO373 GLU374 HIS375 SER376 TYR377 PHE378 SER379 ARG380 TYR381 GLY382 PRO383 ASP384 PHE385 GLU386 LEU387 ASP388 ILE389 ASP390 TYR391 PHE392 PRO393 ASP402 SER403 ILE404 GLN405 LYS406 HIS407 HIS408 ARG409 ARG410 ILE411 LEU412 GLU413 GLN414 LEU415 ARG416 ASN417 TYR418 ALA419 ASP420 LEU421 ASN422 LYS423 LEU424 ILE425 TYR426 ASP427 TYR428 ASP429 GLN430 VAL431 TYR432 GLN433 LEU434 TYR435
Ligands
Unit 5 ZN500 K600 K601 B3N700 B3N701 GOL800 GOL801 GOL802
Unit 6 ZN500 K600 K601 B3N700 B3N701 GOL800 GOL801 GOL802
Unit 7 ZN500 K600 K601 B3N700 B3N701 GOL800 GOL801 GOL802 GOL803
Unit 8 ZN500 K600 K601 B3N700 B3N701 GOL800 GOL801 GOL802 GOL803
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany