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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE PROTHROMBINASE COMPLEX FROM THE VEN PSEUDONAJA TEXTILIS
Keywords BLOOD CLOTTING, BLOOD COAGULATION, PROTHROMBINASE, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4BXS     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   FACTOR X-LIKE PROTEASE  A 248 1587 0
2  Protein   VENOM PROTHROMBIN ACTIVATOR PSEUTARIN-C NON-CATAL SUBUNIT  V 1262 9408 0
3  Ligand    B 2 0 24
4  Ligand    C 8 0 94
5  Ligand    D 2 0 25
6  Ligand    E 2 0 28
7  Ligand   VENOM PROTHROMBIN ACTIVATOR PSEUTARIN-C NON-CATAL SUBUNIT  V 4 0 17
8 Water     112 0 112
total       1640 10995 300
Proteins
Unit 1 LYS87 SER88 CYS89 ARG90 VAL91 ASP92 ASN93 GLY94 ASN95 CYS96 TRP97 HIS98 PHE99 CYS100 LYS101 HIS102 VAL103 GLN104 ASN105 ASP106 ILE107 GLN108 CYS109 SER110 CYS111 ALA112 GLU113 GLY114 TYR115 LEU116 LEU117 GLY118 GLU119 ASP120 GLY121 HIS122 SER123 CYS124 VAL125 ALA126 GLY127 GLY128 ASN129 PHE130 SER131 CYS132 GLY133 ARG134 ASN135 ILE136 LYS137 MET174 ASP175 CYS176 LYS177 LEU178 GLY179 GLU180 CYS181 PRO182 TRP183 GLN184 ALA185 ALA186 LEU187 VAL188 ASP189 GLU190 LYS191 GLU192 GLY193 VAL194 PHE195 CYS196 GLY197 GLY198 THR199 ILE200 LEU201 SER202 PRO203 ILE204 TYR205 VAL206 LEU207 THR208 ALA209 ALA210 HIS211 CYS212 ILE213 ASN214 GLU215 THR216 GLU217 THR218 ILE219 SER220 GLY224 GLU225 ILE226 ASP227 LYS228 LEU237 SER238 VAL239 ASP240 LYS241 ILE242 TYR243 VAL244 HIS245 LYS246 LYS247 PHE248 VAL249 PRO250 PRO251 GLN252 LYS253 ALA254 TYR255 LYS256 PHE257 ASP258 LEU259 ALA260 ALA261 TYR262 ASP263 TYR264 ASP265 ILE266 ALA267 ILE268 ILE269 GLN270 MET271 LYS272 THR273 PRO274 ILE275 GLN276 PHE277 VAL282 PRO283 ALA284 CYS285 LEU286 PRO287 THR288 ALA289 ASP290 PHE291 ALA292 ASN293 GLN294 VAL295 LEU296 MET297 LYS298 GLN299 ASP300 PHE301 GLY302 ILE303 VAL304 SER305 GLY306 PHE307 LYS316 SER317 LYS318 THR319 LEU320 LYS321 VAL322 LEU323 LYS324 VAL325 PRO326 TYR327 VAL328 ASP329 ARG330 HIS331 THR332 CYS333 MET334 VAL335 SER336 SER337 GLU338 THR339 PRO340 ILE341 THR342 PRO343 ASN344 MET345 PHE346 CYS347 ALA348 ASP361 SER362 GLY363 GLY364 PRO365 HIS366 THR367 THR368 VAL369 TYR370 ARG371 ASP372 THR373 HIS374 PHE375 ILE376 THR377 GLY378 ILE379 VAL380 SER381 SER382 GLY383 LYS391 TYR392 GLY393 ASN394 TYR395 THR396 LYS397 LEU398 SER399 LYS400 PHE401 ILE402 PRO403 TRP404 ILE405 LYS406 ARG407 ILE408 MET409 ARG410 GLN411 LYS412
Unit 2 ALA1 GLN2 LEU3 ARG4 GLU5 TYR6 HIS7 ILE8 ALA9 ALA10 GLN11 LEU12 GLU13 ASP14 TRP15 ASP16 TYR17 ASN18 PRO19 GLN20 LEU32 THR33 PHE34 LYS35 LYS36 ILE37 VAL38 TYR39 ARG40 GLU41 TYR42 GLU43 LEU44 ASP45 PHE46 LYS47 GLN48 GLU49 LYS50 PRO51 ARG52 ASP53 ALA54 LEU55 SER56 GLY57 LEU58 LEU59 GLY60 PRO61 THR62 LEU63 ARG64 GLY65 GLU66 VAL67 GLY68 ASP69 SER70 LEU71 ILE72 ILE73 TYR74 PHE75 LYS76 ASN77 PHE78 ALA79 THR80 GLN81 PRO82 VAL83 SER84 ILE85 HIS86 PRO87 GLN88 SER89 ALA90 VAL91 TYR92 ASN93 LYS94 TRP95 SER96 GLU97 GLY98 SER99 SER100 TYR101 SER102 ASP103 GLY104 THR105 SER106 ASP107 VAL108 GLU109 ARG110 LEU111 ASP112 ASP113 ALA114 VAL115 PRO116 PRO117 GLY118 GLN119 SER120 PHE121 LYS122 TYR123 VAL124 TRP125 ASN126 ILE127 THR128 ALA129 GLU130 ILE131 GLY132 PRO133 LYS134 LYS135 ALA136 ASP137 PRO138 PRO139 CYS140 LEU141 THR142 TYR143 ALA144 TYR145 TYR146 SER147 HIS148 VAL149 ASN150 MET151 VAL152 ARG153 ASP154 PHE155 ASN156 SER157 GLY158 LEU159 ILE160 GLY161 ALA162 LEU163 LEU164 ILE165 CYS166 LYS167 GLU168 GLY169 SER170 LEU171 ASN172 ALA173 ASN174 GLY175 SER176 GLN177 LYS178 PHE179 PHE180 ASN181 ARG182 GLU183 TYR184 VAL185 LEU186 MET187 PHE188 SER189 VAL190 PHE191 ASP192 GLU193 SER194 LYS195 ASN196 TRP197 TYR198 ARG199 LYS200 PRO201 SER202 LEU203 GLN204 TYR205 THR206 ILE207 ASN208 GLY209 PHE210 ALA211 ASN212 GLY213 THR214 LEU215 PRO216 ASP217 VAL218 GLN219 ALA220 CYS221 ALA222 TYR223 ASP224 HIS225 ILE226 SER227 TRP228 HIS229 LEU230 ILE231 GLY232 MET233 SER234 SER235 SER236 PRO237 GLU238 ILE239 PHE240 SER241 VAL242 HIS243 PHE244 ASN245 GLY246 GLN247 THR248 LEU249 GLU250 GLN251 ASN252 HIS253 TYR254 LYS255 VAL256 SER257 THR258 ILE259 ASN260 LEU261 VAL262 GLY263 GLY264 ALA265 SER266 VAL267 THR268 ALA269 ASP270 MET271 SER272 VAL273 SER274 ARG275 THR276 GLY277 LYS278 TRP279 LEU280 ILE281 SER282 SER283 LEU284 VAL285 ALA286 LYS287 HIS288 LEU289 GLN290 ALA291 GLY292 MET293 TYR294 GLY295 TYR296 LEU297 ASN298 ILE299 LYS300 ASP301 CYS302 GLY303 ASN304 PRO305 ASP306 MET318 LYS319 ILE320 LYS321 ASN322 TRP323 GLU324 TYR325 PHE326 ILE327 ALA328 ALA329 GLU330 GLU331 ILE332 THR333 TRP334 ASP335 TYR336 ALA337 PRO338 GLU339 ILE340 PRO341 SER342 SER343 VAL344 ASP345 ARG346 ARG347 TYR348 LYS349 ALA350 GLN351 TYR352 LEU353 ASP354 ASN355 PHE356 SER357 ASN358 PHE359 ILE360 GLY361 LYS362 LYS363 TYR364 LYS365 LYS366 ALA367 VAL368 PHE369 ARG370 GLN371 TYR372 GLU373 ASP374 GLY375 ASN376 PHE377 THR378 LYS379 PRO380 THR381 TYR382 ALA383 ILE384 TRP385 PRO386 LYS387 GLU388 ARG389 GLY390 ILE391 LEU392 GLY393 PRO394 VAL395 ILE396 LYS397 ALA398 LYS399 VAL400 ARG401 ASP402 THR403 VAL404 THR405 ILE406 VAL407 PHE408 LYS409 ASN410 LEU411 ALA412 SER413 ARG414 PRO415 TYR416 SER417 ILE418 TYR419 VAL420 HIS421 GLY422 VAL423 SER424 VAL425 SER426 LYS427 ASP428 ALA429 GLU430 GLY431 ALA432 ILE433 TYR434 PRO435 SER436 ASP437 PRO438 THR443 HIS444 GLY445 LYS446 ALA447 VAL448 GLU449 PRO450 GLY451 GLN452 VAL453 TYR454 THR455 TYR456 LYS457 TRP458 THR459 VAL460 LEU461 ASP462 THR463 ASP464 GLU465 PRO466 THR467 VAL468 LYS469 ASP470 SER471 GLU472 CYS473 ILE474 THR475 LYS476 LEU477 TYR478 HIS479 SER480 ALA481 VAL482 ASP483 MET484 THR485 ARG486 ASP487 ILE488 ALA489 SER490 GLY491 LEU492 ILE493 GLY494 PRO495 LEU496 LEU497 VAL498 CYS499 LYS500 HIS501 LYS502 ALA503 LEU504 SER505 GLY508 VAL509 GLN510 ASN511 LYS512 ALA513 ASP514 VAL515 GLU516 GLN517 HIS518 ALA519 VAL520 PHE521 ALA522 VAL523 PHE524 ASP525 GLU526 ASN527 LYS528 SER529 TRP530 TYR531 LEU532 GLU533 ASP534 ASN535 ILE536 LYS537 LYS538 TYR539 CYS540 SER541 ASN542 PRO543 SER544 ALA545 VAL546 LYS547 LYS548 ASP549 ASP550 PRO551 LYS552 PHE553 TYR554 LYS555 SER556 ASN557 VAL558 MET559 TYR560 THR561 LEU562 ASN563 GLY564 TYR565 ALA566 SER567 ASP568 ARG569 THR570 GLU571 VAL572 LEU573 ARG574 PHE575 HIS576 GLN577 SER578 GLU579 VAL580 VAL581 GLN582 TRP583 HIS584 LEU585 THR586 SER587 VAL588 GLY589 THR590 VAL591 ASP592 GLU593 ILE594 VAL595 PRO596 VAL597 HIS598 LEU599 SER600 GLY601 HIS602 THR603 PHE604 LEU605 SER606 LYS607 GLY608 LYS609 HIS610 GLN611 ASP612 ILE613 LEU614 ASN615 LEU616 PHE617 PRO618 MET619 SER620 GLY621 GLU622 SER623 ALA624 THR625 VAL626 THR627 MET628 ASP629 ASN630 LEU631 GLY632 THR633 TRP634 LEU635 LEU636 SER637 SER638 TRP639 GLY640 SER641 CYS642 GLU643 MET644 SER645 ASN646 GLY647 MET648 ARG649 LEU650 ARG651 PHE652 LEU653 ASP654 ALA655 ASN656 TYR657 ASP658 ASP659 GLU660 ASP661 GLU662 GLY663 ASN664 GLU665 GLU666 GLU667 GLU668 GLU669 ASP670 ASP671 GLY672 ASP673 ILE674 PHE675 ALA676 ASP677 ILE678 PHE679 ILE680 PRO681 SER682 GLU683 GLY793 ASN794 LYS795 ARG796 ARG797 TYR798 TYR799 ILE800 ALA801 ALA802 GLU803 GLU804 VAL805 LEU806 TRP807 ASP808 TYR809 SER810 PRO811 LYS823 THR824 THR825 PHE826 LYS827 LYS828 ALA829 ILE830 PHE831 ARG832 SER833 TYR834 LEU835 ASP836 ASP837 THR838 PHE839 GLN840 THR841 PRO842 SER843 THR844 GLY845 GLY846 GLU847 TYR848 GLU849 LYS850 HIS851 LEU852 GLY853 ILE854 LEU855 GLY856 PRO857 ILE858 ILE859 ARG860 ALA861 GLU862 VAL863 ASP864 ASP865 VAL866 ILE867 GLU868 ILE869 GLN870 PHE871 LYS872 ASN873 LEU874 ALA875 SER876 ARG877 PRO878 TYR879 SER880 LEU881 HIS882 ALA883 HIS884 GLY885 LEU886 LEU887 TYR888 GLU889 LYS890 SER891 SER892 GLU893 GLY894 ARG895 SER896 TYR897 ASP898 ASP899 LYS900 SER901 PRO902 GLU903 LEU904 PHE905 LYS906 LYS907 ASP908 ASP909 ALA910 ILE911 MET912 PRO913 ASN914 GLY915 THR916 TYR917 THR918 TYR919 VAL920 TRP921 GLN922 VAL923 PRO924 PRO925 ARG926 SER927 GLY928 PRO929 THR930 ASP931 ASN932 THR933 GLU934 LYS935 CYS936 LYS937 SER938 TRP939 ALA940 TYR941 TYR942 SER943 GLY944 VAL945 ASN946 PRO947 GLU948 LYS949 ASP950 ILE951 HIS952 SER953 GLY954 LEU955 ILE956 GLY957 PRO958 ILE959 LEU960 ILE961 CYS962 GLN963 LYS964 GLY965 MET966 ILE967 ASP968 LYS969 TYR970 ASN971 ARG972 THR973 ILE974 ASP975 ILE976 ARG977 GLU978 PHE979 VAL980 LEU981 PHE982 PHE983 MET984 VAL985 PHE986 ASP987 GLU988 GLU989 LYS990 SER991 TRP992 TYR993 PHE994 PRO995 CYS1002 SER1011 LEU1012 HIS1013 THR1014 PHE1015 PRO1016 ALA1017 ILE1018 ASN1019 GLY1020 ILE1021 PRO1022 TYR1023 GLN1024 LEU1025 GLN1026 GLY1027 LEU1028 THR1029 MET1030 TYR1031 LYS1032 ASP1033 GLU1034 ASN1035 VAL1036 HIS1037 TRP1038 HIS1039 LEU1040 LEU1041 ASN1042 MET1043 GLY1044 GLY1045 PRO1046 LYS1047 ASP1048 ILE1049 HIS1050 VAL1051 VAL1052 ASN1053 PHE1054 HIS1055 GLY1056 GLN1057 THR1058 PHE1059 THR1060 GLU1061 GLU1062 GLY1063 ARG1064 GLU1065 ASP1066 ASN1067 GLN1068 LEU1069 GLY1070 VAL1071 LEU1072 PRO1073 LEU1074 LEU1075 PRO1076 GLY1077 THR1078 PHE1079 ALA1080 SER1081 ILE1082 LYS1083 MET1084 LYS1085 PRO1086 SER1087 LYS1088 ILE1089 GLY1090 THR1091 TRP1092 LEU1093 LEU1094 GLU1095 THR1096 GLU1097 VAL1098 GLY1099 GLU1100 ASN1101 GLN1102 GLU1103 ARG1104 GLY1105 MET1106 GLN1107 ALA1108 LEU1109 PHE1110 THR1111 VAL1112 ILE1113 ASP1114 LYS1115 ASP1116 CYS1117 LYS1118 LEU1119 PRO1120 MET1121 GLY1122 LEU1123 ALA1124 SER1125 GLY1126 ILE1127 ILE1128 GLN1129 ASP1130 SER1131 GLN1132 ILE1133 SER1134 ALA1135 SER1136 GLY1137 HIS1138 VAL1139 GLY1140 TYR1141 TRP1142 GLU1143 PRO1144 LYS1145 LEU1146 ALA1147 ARG1148 LEU1149 ASN1150 ASN1151 THR1152 GLY1153 LYS1154 TYR1155 ASN1156 ALA1157 TRP1158 SER1159 ILE1160 ILE1161 LYS1162 LYS1163 GLU1164 HIS1165 GLU1166 HIS1167 PRO1168 TRP1169 ILE1170 GLN1171 ILE1172 ASP1173 LEU1174 GLN1175 ARG1176 GLN1177 VAL1178 VAL1179 ILE1180 THR1181 GLY1182 ILE1183 GLN1184 THR1185 GLN1186 GLY1187 THR1188 VAL1189 GLN1190 LEU1191 LEU1192 GLN1193 HIS1194 SER1195 TYR1196 THR1197 VAL1198 GLU1199 TYR1200 PHE1201 VAL1202 THR1203 TYR1204 SER1205 GLU1206 ASP1207 GLY1208 GLN1209 ASN1210 TRP1211 ILE1212 THR1213 PHE1214 LYS1215 GLY1216 GLN1222 MET1223 HIS1224 PHE1225 GLU1226 GLY1227 ASN1228 SER1229 ASP1230 GLY1231 THR1232 THR1233 VAL1234 LYS1235 GLU1236 ASN1237 HIS1238 ILE1239 ASP1240 PRO1241 PRO1242 ILE1243 ILE1244 ALA1245 ARG1246 TYR1247 ILE1248 ARG1249 LEU1250 HIS1251 PRO1252 THR1253 LYS1254 PHE1255 TYR1256 ASN1257 ARG1258 PRO1259 THR1260 PHE1261 ARG1262 ILE1263 GLU1264 LEU1265 LEU1266 GLY1267 CYS1268 GLU1269 VAL1270 GLU1271 GLY1272 CYS1273 SER1274 VAL1275 PRO1276 LEU1277 GLY1278 MET1279 GLU1280 SER1281 GLY1282 ALA1283 ILE1284 LYS1285 ASN1286 LYS1287 GLU1288 ILE1289 THR1290 ALA1291 SER1292 SER1293 TYR1294 LYS1295 LYS1296 THR1297 TRP1298 TRP1299 SER1300 SER1301 TRP1302 GLU1303 PRO1304 PHE1305 LEU1306 ALA1307 ARG1308 LEU1309 ASN1310 LEU1311 GLU1312 GLY1313 GLY1314 THR1315 ASN1316 ALA1317 TRP1318 GLN1319 PRO1320 GLU1321 VAL1322 ASN1323 ASN1324 LYS1325 ASP1326 GLN1327 TRP1328 LEU1329 GLN1330 ILE1331 ASP1332 LEU1333 GLN1334 HIS1335 LEU1336 THR1337 LYS1338 ILE1339 THR1340 SER1341 ILE1342 ILE1343 THR1344 GLN1345 GLY1346 ALA1347 THR1348 SER1349 MET1350 THR1351 THR1352 SER1353 MET1354 TYR1355 VAL1356 LYS1357 THR1358 PHE1359 SER1360 ILE1361 HIS1362 TYR1363 THR1364 ASP1365 ASP1366 ASN1367 SER1368 THR1369 TRP1370 LYS1371 PRO1372 TYR1373 LEU1374 ASP1375 VAL1376 ARG1377 THR1378 SER1379 MET1380 GLU1381 LYS1382 VAL1383 PHE1384 THR1385 GLY1386 ASN1387 ILE1388 ASN1389 SER1390 ASP1391 GLY1392 HIS1393 VAL1394 LYS1395 HIS1396 PHE1397 PHE1398 LYS1399 PRO1400 PRO1401 ILE1402 LEU1403 SER1404 ARG1405 PHE1406 ILE1407 ARG1408 ILE1409 ILE1410 PRO1411 LYS1412 THR1413 TRP1414 ASN1415 GLN1416 TYR1417 ILE1418 ALA1419 LEU1420 ARG1421 ILE1422 GLU1423 LEU1424 PHE1425 GLY1426 CYS1427 GLU1428 VAL1429
Ligands
Unit 3 NAG1 FUC2
Unit 4 NAG1 NAG2 BMA3 MAN4 MAN5 MAN6 MAN7 MAN8
Unit 5 NAG1 NAG2
Unit 6 NAG1 NAG2
Unit 7 NAG1521 CA2430 CA2431 CU2432
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany