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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN PRIMASE IN COMPLEX WITH THE PRIMA BINDING MOTIF OF DNA POLYMERASE ALPHA
Keywords TRANSFERASE, DNA REPLICATION, FUSION PROTEIN, CHIMERA
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4BPX     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA PRIMASE SMALL SUBUNIT  A 381 6367 0
2  Protein   DNA POLYMERASE ALPHA CATALYTIC SUBUNIT, DNA PRIMA SUBUNIT  B 181 3056 0
3  Protein   DNA PRIMASE SMALL SUBUNIT  C 372 6195 0
4  Protein   DNA POLYMERASE ALPHA CATALYTIC SUBUNIT, DNA PRIMA SUBUNIT  D 213 3573 0
5  Ligand   DNA PRIMASE SMALL SUBUNIT  A 1 0 1
6  Ligand   DNA PRIMASE SMALL SUBUNIT  C 1 0 1
total       1149 19191 2
Proteins
Unit 1 THR3 PHE4 ASP5 PRO6 THR7 GLU8 LEU9 PRO10 GLU11 LEU12 LEU13 LYS14 LEU15 TYR16 TYR17 ARG18 ARG19 LEU20 PHE21 PRO22 TYR23 SER24 GLN25 TYR26 TYR27 ARG28 TRP29 LEU30 ASN31 TYR32 GLY33 GLY34 VAL35 ILE36 LYS37 ASN38 TYR39 PHE40 GLN41 HIS42 ARG43 GLU44 PHE45 SER46 PHE47 THR48 LEU49 LYS50 ASP51 ASP52 ILE53 TYR54 ILE55 ARG56 TYR57 GLN58 SER59 PHE60 ASN61 ASN62 GLN63 SER64 ASP65 LEU66 GLU67 LYS68 GLU69 MET70 GLN71 ALA72 ALA73 ASN74 PRO75 TYR76 LYS77 ILE78 ASP79 ILE80 GLY81 ALA82 VAL83 TYR84 SER85 HIS86 ARG87 PRO88 ASN89 GLN90 HIS91 ASN92 THR93 VAL94 LYS95 LEU96 GLY97 ALA98 PHE99 GLN100 ALA101 GLN102 GLU103 LYS104 GLU105 LEU106 VAL107 PHE108 ASP109 ILE110 ASP111 MET112 THR113 ASP114 TYR115 ASP116 ASP117 VAL118 ARG119 ARG120 CYS121 CYS122 SER123 SER124 ALA125 ASP126 ILE127 CYS128 PRO129 LYS130 CYS131 TRP132 THR133 LEU134 MET135 THR136 MET137 ALA138 ILE139 ARG140 ILE141 ILE142 ASP143 ARG144 ALA145 LEU146 LYS147 GLU148 ASP149 PHE150 GLY151 PHE152 LYS153 HIS154 ARG155 LEU156 TRP157 VAL158 TYR159 SER160 GLY161 ARG162 ARG163 GLY164 VAL165 HIS166 CYS167 TRP168 VAL169 CYS170 ASP171 GLU172 SER173 VAL174 ARG175 LYS176 LEU177 SER178 SER179 ALA180 VAL181 ARG182 SER183 GLY184 ILE185 VAL186 GLU187 TYR188 LEU189 SER190 LEU191 VAL192 LYS193 GLY194 GLY195 GLN196 ASP197 VAL198 LYS199 LYS200 LYS201 VAL202 HIS203 LEU204 SER205 GLU206 LYS207 ILE208 HIS209 PRO210 PHE211 ILE212 ARG213 LYS214 SER215 ILE216 ASN217 ILE218 ILE219 LYS220 LYS221 TYR222 PHE223 GLU224 GLU225 TYR226 ALA227 LEU228 VAL229 ASN230 GLN231 ASP232 ILE233 LEU234 GLU235 ASN236 LYS237 GLU238 SER239 TRP240 ASP241 LYS242 ILE243 LEU244 ALA245 LEU246 VAL247 PRO248 GLU249 THR250 ILE251 HIS252 ASP253 GLU254 LEU255 GLN256 GLN257 SER258 PHE259 GLN260 LYS261 SER262 HIS263 ASN264 SER265 LEU266 GLN267 ARG268 TRP269 GLU270 HIS271 LEU272 LYS273 LYS274 VAL275 ALA276 SER277 ARG278 TYR279 GLN280 ASN281 ASN282 PRO290 TRP291 LEU292 GLU293 TRP294 GLU295 ILE296 MET297 LEU298 GLN299 TYR300 CYS301 PHE302 PRO303 ARG304 LEU305 ASP306 ILE307 ASN308 VAL309 SER310 LYS311 GLY312 ILE313 ASN314 HIS315 LEU316 LEU317 LYS318 SER319 PRO320 PHE321 SER322 VAL323 HIS324 PRO325 LYS326 THR327 GLY328 ARG329 ILE330 SER331 VAL332 PRO333 ILE334 ASP335 LEU336 GLN337 LYS338 VAL339 ASP340 GLN341 PHE342 ASP343 PRO344 PHE345 THR346 VAL347 PRO348 THR349 ILE350 SER351 PHE352 ILE353 CYS354 ARG355 GLU356 LEU357 ASP358 ALA359 ILE360 ARG379 THR380 ARG381 ASP382 TYR383 LYS384 LYS385 THR386 SER387 LEU388 ALA389 PRO390 TYR391 VAL392 LYS393 VAL394 PHE395 GLU396 HIS397 PHE398 LEU399 GLU400 ASN401 LEU402 ASP403 LYS404 SER405 ARG406 LYS407 GLY408
Unit 2 ILE37 SER38 LEU39 ILE40 GLU41 PHE42 GLU43 ASN44 LEU45 ALA46 ILE47 ASP48 ARG49 VAL50 LYS51 LEU52 LEU53 LYS54 SER55 VAL56 GLU57 ASN58 LEU59 SER72 LYS73 LEU74 GLU75 SER76 GLU77 LEU78 ARG79 LYS80 LEU81 ARG97 ARG98 ASP99 HIS100 ILE101 SER102 HIS103 PHE104 ILE105 LEU106 ARG107 LEU108 ALA109 TYR110 CYS111 GLN112 SER113 GLU114 GLU115 LEU116 ARG117 ARG118 TRP119 PHE120 ILE121 GLN122 GLN123 GLU124 MET125 ASP126 LEU127 LEU128 ARG129 PHE130 ARG131 PHE132 SER133 ILE134 LEU135 PRO136 LYS137 ASP138 LYS139 ILE140 GLN141 ASP142 PHE143 LEU144 LYS145 ASP146 SER147 GLN148 LEU149 GLN150 PHE151 GLU152 ALA153 ILE154 SER155 ASP156 GLU157 GLU158 LYS159 THR160 LEU161 ARG162 GLU163 GLN164 GLU165 ILE166 VAL167 ALA168 SER169 SER170 PRO171 SER172 LEU173 LEU178 GLY179 PHE180 GLU181 SER182 ILE183 TYR184 LYS185 ILE186 PRO187 PHE188 ALA189 ASP190 ALA191 LEU192 ASP193 LEU194 PHE195 ARG196 GLY197 ARG198 LYS199 VAL200 TYR201 LEU202 GLU203 ASP204 GLY205 PHE206 ALA207 TYR208 VAL209 PRO210 LEU211 LYS212 ASP213 ILE214 VAL215 ALA216 ILE217 ILE218 LEU219 ASN220 GLU221 PHE222 ARG223 ALA224 LYS225 LEU226 SER227 LYS228 ALA229 LEU230 ALA231 LEU232 THR233 ALA234 ARG235 SER236 LEU237 ASP243 GLU244 ARG245 LEU246 GLN247 PRO248 LEU249 LEU250 ASN251 HIS252 LEU253
Unit 3 PHE4 ASP5 PRO6 THR7 GLU8 LEU9 PRO10 GLU11 LEU12 LEU13 LYS14 LEU15 TYR16 TYR17 ARG18 ARG19 LEU20 PHE21 PRO22 TYR23 SER24 GLN25 TYR26 TYR27 ARG28 TRP29 LEU30 ASN31 TYR32 GLY33 GLY34 VAL35 ILE36 LYS37 ASN38 TYR39 PHE40 GLN41 HIS42 ARG43 GLU44 PHE45 SER46 PHE47 THR48 LEU49 LYS50 ASP51 ASP52 ILE53 TYR54 ILE55 ARG56 TYR57 GLN58 SER59 PHE60 ASN61 ASN62 GLN63 SER64 ASP65 LEU66 GLU67 LYS68 GLU69 MET70 GLN71 ALA72 ALA73 ASN74 PRO75 TYR76 LYS77 ILE78 ASP79 ILE80 GLY81 ALA82 VAL83 TYR84 SER85 HIS86 ARG87 PRO88 ASN89 GLN90 HIS91 ASN92 THR93 VAL94 LYS95 LEU96 GLY97 ALA98 PHE99 GLN100 ALA101 GLN102 GLU103 LYS104 GLU105 LEU106 VAL107 PHE108 ASP109 ILE110 ASP111 MET112 THR113 ASP114 TYR115 ASP116 ASP117 VAL118 ARG119 ARG120 CYS121 CYS122 SER123 SER124 ALA125 ASP126 ILE127 CYS128 PRO129 LYS130 CYS131 TRP132 THR133 LEU134 MET135 THR136 MET137 ALA138 ILE139 ARG140 ILE141 ILE142 ASP143 ARG144 ALA145 LEU146 LYS147 GLU148 ASP149 PHE150 GLY151 PHE152 LYS153 HIS154 ARG155 LEU156 TRP157 VAL158 TYR159 SER160 GLY161 ARG162 ARG163 GLY164 VAL165 HIS166 CYS167 TRP168 VAL169 CYS170 ASP171 GLU172 SER173 VAL174 ARG175 LYS176 LEU177 SER178 SER179 ALA180 VAL181 ARG182 SER183 GLY184 ILE185 VAL186 GLU187 TYR188 LEU189 SER190 LEU191 VAL192 LYS193 GLY194 GLY195 GLN196 ASP197 VAL198 LYS199 LYS200 LYS201 VAL202 HIS203 LEU204 SER205 GLU206 LYS207 ILE208 HIS209 PRO210 PHE211 ILE212 ARG213 LYS214 SER215 ILE216 ASN217 ILE218 ILE219 LYS220 LYS221 TYR222 PHE223 GLU224 GLU225 TYR226 ALA227 LEU228 VAL229 ASN230 GLN231 ASP232 ILE233 LEU234 GLU235 ASN236 LYS237 GLU238 SER239 TRP240 ASP241 LYS242 ILE243 LEU244 ALA245 LEU246 VAL247 PRO248 GLU249 THR250 ILE251 HIS252 ASP253 GLU254 LEU255 GLN256 GLN257 SER258 PHE259 GLN260 LYS261 SER262 HIS263 ASN264 SER265 LEU266 GLN267 ARG268 TRP269 GLU270 HIS271 LEU272 LYS273 LYS274 VAL275 ALA276 SER277 ARG278 TYR279 GLN280 ASN281 ASN282 PRO290 TRP291 LEU292 GLU293 TRP294 GLU295 ILE296 MET297 LEU298 GLN299 TYR300 CYS301 PHE302 PRO303 ARG304 LEU305 ASP306 ILE307 ASN308 VAL309 SER310 LYS311 GLY312 ILE313 ASN314 HIS315 LEU316 LEU317 LYS318 SER319 PRO320 PHE321 SER322 VAL323 HIS324 PRO325 LYS326 THR327 GLY328 ARG329 ILE330 SER331 VAL332 PRO333 ILE334 ASP335 LEU336 GLN337 LYS338 VAL339 ASP340 GLN341 PHE342 ASP343 PRO344 PHE345 THR346 VAL347 PRO348 THR349 ILE350 SER351 PHE352 ILE353 CYS354 ARG355 GLU356 LEU357 ASP358 ALA359 THR386 SER387 LEU388 ALA389 PRO390 TYR391 VAL392 LYS393 VAL394 PHE395 GLU396 HIS397 PHE398 LEU399 GLU400 ASN401 LEU402 ASP403 LYS404 SER405 ARG406 LYS407 GLY408
Unit 4 LEU26 GLN27 PHE28 TYR29 LEU30 GLN31 PRO32 PRO33 SER34 GLU35 ASN36 ILE37 SER38 LEU39 ILE40 GLU41 PHE42 GLU43 ASN44 LEU45 ALA46 ILE47 ASP48 ARG49 VAL50 LYS51 LEU52 LEU53 LYS54 SER55 VAL56 GLU57 ASN58 LEU59 GLY60 VAL61 SER62 TYR63 VAL64 LYS65 GLY66 THR67 GLU68 GLN69 TYR70 GLN71 SER72 LYS73 LEU74 GLU75 SER76 GLU77 LEU78 ARG79 LYS80 LEU81 LYS82 PHE83 LEU89 GLU90 ASP91 GLU92 TYR93 GLU94 PRO95 ARG96 ARG97 ARG98 ASP99 HIS100 ILE101 SER102 HIS103 PHE104 ILE105 LEU106 ARG107 LEU108 ALA109 TYR110 CYS111 GLN112 SER113 GLU114 GLU115 LEU116 ARG117 ARG118 TRP119 PHE120 ILE121 GLN122 GLN123 GLU124 MET125 ASP126 LEU127 LEU128 ARG129 PHE130 ARG131 PHE132 SER133 ILE134 LEU135 PRO136 LYS137 ASP138 LYS139 ILE140 GLN141 ASP142 PHE143 SER155 ASP156 GLU157 GLU158 LYS159 THR160 LEU161 ARG162 GLU163 GLN164 GLU165 ILE166 VAL167 ALA168 SER169 SER170 GLU181 SER182 ILE183 TYR184 LYS185 ILE186 PRO187 PHE188 ALA189 ASP190 ALA191 LEU192 ASP193 LEU194 PHE195 ARG196 GLY197 ARG198 LYS199 VAL200 TYR201 LEU202 GLU203 ASP204 GLY205 PHE206 ALA207 TYR208 VAL209 PRO210 LEU211 LYS212 ASP213 ILE214 VAL215 ALA216 ILE217 ILE218 LEU219 ASN220 GLU221 PHE222 ARG223 ALA224 LYS225 LEU226 SER227 LYS228 ALA229 LEU230 ALA231 LEU232 THR233 ALA234 ARG235 SER236 LEU237 PRO238 ALA239 VAL240 GLN241 SER242 ASP243 GLU244 ARG245 LEU246 GLN247 PRO248 LEU249 LEU250 ASN251 HIS252 LEU253 GLY1445 TYR1446 SER1447 GLU1448 VAL1449 ASN1450 LEU1451 SER1452 LYS1453 LEU1454 PHE1455
Ligands
Unit 5 ZN430
Unit 6 ZN430
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany