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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF MITOCHONDRIAL RNA POLYMERASE ELONGATION COMPLEX
Keywords TRANSCRIPTION, RNA POLYMERASE, MITOCHONDRIA, TRANSFERASE, DN HYBRID
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4BOC     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL  A 989 7880 0
2  Other macromolecule   5'-D(*CP*AP*TP*GP*GP*GP*GP*TP*AP*AP*TP*TP*AP*TP  *TP*TP*CP*GP*AP*CP*GP*CP*CP*AP*GP*AP*CP*G)-3'  N 21 437 0
3  RNA    R 9 195 0
4  Other macromolecule   5'-D(*CP*GP*TP*CP*TP*GP*GP*CP*GP*TP*GP*CP*GP*CP  *GP*CP*CP*GP*CP*TP*AP*CP*CP*CP*CP*AP*TP*G)-3'  T 27 546 0
5 Water     244 0 244
total       1290 9058 244
Proteins
Unit 1 GLN218 LEU219 SER220 GLY221 GLN222 GLN223 GLN224 ARG225 LEU226 LEU227 ALA228 PHE229 PHE230 LYS231 CYS232 CYS233 LEU234 LEU235 THR236 ASP237 GLN238 LEU239 PRO240 LEU241 ALA242 HIS243 HIS244 LEU245 LEU246 VAL247 VAL248 HIS249 HIS250 GLY251 GLN252 ARG253 GLN254 LYS255 ARG256 LYS257 LEU258 LEU259 THR260 LEU261 ASP262 MET263 TYR264 ASN265 ALA266 VAL267 MET268 LEU269 GLY270 TRP271 ALA272 ARG273 GLN274 GLY275 ALA276 PHE277 LYS278 GLU279 LEU280 VAL281 TYR282 VAL283 LEU284 PHE285 MET286 VAL287 LYS288 ASP289 ALA290 GLY291 LEU292 THR293 PRO294 ASP295 LEU296 LEU297 SER298 TYR299 ALA300 ALA301 ALA302 LEU303 GLN304 CYS305 MET306 GLY307 ARG308 GLN309 ASP310 GLN311 ASP312 ALA313 GLY314 THR315 ILE316 GLU317 ARG318 CYS319 LEU320 GLU321 GLN322 MET323 SER324 GLN325 GLU326 GLY327 LEU328 LYS329 LEU330 GLN331 ALA332 LEU333 PHE334 THR335 ALA336 VAL337 LEU338 LEU339 SER340 GLU341 GLU342 ASP343 ARG344 ALA345 THR346 VAL347 LEU348 LYS349 ALA350 VAL351 HIS352 LYS353 VAL354 LYS355 PRO356 THR357 PHE358 SER359 LEU360 PRO361 PRO362 GLN363 LEU364 PRO365 PRO366 PRO367 VAL368 ASN369 THR370 SER371 LYS372 LEU373 LEU374 ARG375 ASP376 VAL377 TYR378 ALA379 LYS380 ASP381 GLY382 ARG383 VAL384 SER385 TYR386 PRO387 LYS388 LEU389 HIS390 LEU391 PRO392 LEU393 LYS394 THR395 LEU396 GLN397 CYS398 LEU399 PHE400 GLU401 LYS402 GLN403 LEU404 HIS405 MET406 GLU407 LEU408 ALA409 SER410 ARG411 VAL412 CYS413 VAL414 VAL415 SER416 VAL417 GLU418 LYS419 PRO420 THR421 LEU422 PRO423 SER424 LYS425 GLU426 VAL427 LYS428 HIS429 ALA430 ARG431 LYS432 THR433 LEU434 LYS435 THR436 LEU437 ARG438 ASP439 GLN440 TRP441 GLU442 LYS443 ALA444 LEU445 CYS446 ARG447 ALA448 LEU449 ARG450 GLU451 THR452 LYS453 ASN454 ARG455 LEU456 GLU457 ARG458 GLU459 VAL460 TYR461 GLU462 GLY463 ARG464 PHE465 SER466 LEU467 TYR468 PRO469 PHE470 LEU471 CYS472 LEU473 LEU474 ASP475 GLU476 ARG477 GLU478 VAL479 VAL480 ARG481 MET482 LEU483 LEU484 GLN485 VAL486 LEU487 GLN488 ALA489 LEU490 PRO491 ALA492 GLN493 GLY494 GLU495 SER496 PHE497 THR498 THR499 LEU500 ALA501 ARG502 GLU503 LEU504 SER505 ALA506 ARG507 THR508 PHE509 SER510 ARG511 HIS512 VAL513 VAL514 GLN515 ARG516 GLN517 ARG518 VAL519 SER520 GLY521 GLN522 VAL523 GLN524 ALA525 LEU526 GLN527 ASN528 HIS529 TYR530 ARG531 LYS532 TYR533 LEU534 CYS535 LEU536 LEU537 ALA538 SER539 ASP540 ALA541 GLU542 VAL543 PRO544 GLU545 PRO546 CYS547 LEU548 PRO549 ARG550 GLN551 TYR552 TRP553 GLU554 GLU555 LEU556 GLY557 ALA558 PRO559 GLU560 ALA561 LEU562 ARG563 GLU564 GLN565 PRO566 TRP567 PRO568 LEU569 PRO570 VAL571 GLN572 MET573 GLU574 LEU575 GLY576 LYS577 LEU578 LEU579 ALA580 GLU581 MET582 LEU583 VAL584 GLN585 ALA586 THR587 GLN588 MET589 PRO590 CYS591 SER592 LEU593 ASP594 ARG598 SER599 SER600 ARG601 LEU602 VAL603 PRO604 VAL605 LEU606 TYR607 HIS608 VAL609 TYR610 SER611 PHE612 ARG613 ASN614 VAL615 GLN616 GLN617 ILE618 GLY619 ILE620 LEU621 LYS622 PRO623 HIS624 PRO625 ALA626 TYR627 VAL628 GLN629 LEU630 LEU631 GLU632 LYS633 ALA634 ALA635 GLU636 PRO637 THR638 LEU639 THR640 PHE641 GLU642 ALA643 VAL644 ASP645 VAL646 PRO647 MET648 LEU649 CYS650 PRO651 PRO652 LEU653 PRO654 TRP655 THR656 SER657 PRO658 HIS659 SER660 GLY661 ALA662 PHE663 LEU664 LEU665 SER666 PRO667 THR668 LYS669 LEU670 MET671 ARG672 THR673 VAL674 GLU675 GLY676 ALA677 THR678 GLN679 HIS680 GLN681 GLU682 LEU683 LEU684 GLU685 THR686 CYS687 PRO688 PRO689 THR690 ALA691 LEU692 HIS693 GLY694 ALA695 LEU696 ASP697 ALA698 LEU699 THR700 GLN701 LEU702 GLY703 ASN704 CYS705 ALA706 TRP707 ARG708 VAL709 ASN710 GLY711 ARG712 VAL713 LEU714 ASP715 LEU716 VAL717 LEU718 GLN719 LEU720 PHE721 GLN722 ALA723 LYS724 GLY725 CYS726 PRO727 GLN728 LEU729 GLY730 VAL731 PRO732 ALA733 PRO734 PRO735 SER736 GLU737 ALA738 PRO739 GLN740 PRO741 PRO742 GLU743 ALA744 HIS745 LEU746 PRO747 HIS748 SER749 ALA750 ALA751 PRO752 ALA753 ARG754 LYS755 ALA756 GLU757 LEU758 ARG759 ARG760 GLU761 LEU762 ALA763 HIS764 CYS765 GLN766 LYS767 VAL768 ALA769 ARG770 GLU771 MET772 HIS773 SER774 LEU775 ARG776 ALA777 GLU778 ALA779 LEU780 TYR781 ARG782 LEU783 SER784 LEU785 ALA786 GLN787 HIS788 LEU789 ARG790 ASP791 ARG792 VAL793 PHE794 TRP795 LEU796 PRO797 HIS798 ASN799 MET800 ASP801 PHE802 ARG803 GLY804 ARG805 THR806 TYR807 PRO808 CYS809 PRO810 PRO811 HIS812 PHE813 ASN814 HIS815 LEU816 GLY817 SER818 ASP819 VAL820 ALA821 ARG822 ALA823 LEU824 LEU825 GLU826 PHE827 ALA828 GLN829 GLY830 ARG831 PRO832 LEU833 GLY834 PRO835 HIS836 GLY837 LEU838 ASP839 TRP840 LEU841 LYS842 ILE843 HIS844 LEU845 VAL846 ASN847 LEU848 THR849 GLY850 LEU851 LYS852 LYS853 ARG854 GLU855 PRO856 LEU857 ARG858 LYS859 ARG860 LEU861 ALA862 PHE863 ALA864 GLU865 GLU866 VAL867 MET868 ASP869 ASP870 ILE871 LEU872 ASP873 SER874 ALA875 ASP876 GLN877 PRO878 LEU879 THR880 GLY881 ARG882 LYS883 TRP884 TRP885 MET886 GLY887 ALA888 GLU889 GLU890 PRO891 TRP892 GLN893 THR894 LEU895 ALA896 CYS897 CYS898 MET899 GLU900 VAL901 ALA902 ASN903 ALA904 VAL905 ARG906 ALA907 SER908 ASP909 PRO910 ALA911 ALA912 TYR913 VAL914 SER915 HIS916 LEU917 PRO918 VAL919 HIS920 GLN921 ASP922 GLY923 SER924 CYS925 ASN926 GLY927 LEU928 GLN929 HIS930 TYR931 ALA932 ALA933 LEU934 GLY935 ARG936 ASP937 SER938 VAL939 GLY940 ALA941 ALA942 SER943 VAL944 ASN945 LEU946 GLU947 PRO948 SER949 ASP950 VAL951 PRO952 GLN953 ASP954 VAL955 TYR956 SER957 GLY958 VAL959 ALA960 ALA961 GLN962 VAL963 GLU964 VAL965 PHE966 ARG967 ARG968 GLN969 ASP970 ALA971 GLN972 ARG973 GLY974 MET975 ARG976 VAL977 ALA978 GLN979 VAL980 LEU981 GLU982 GLY983 PHE984 ILE985 THR986 ARG987 LYS988 VAL989 VAL990 LYS991 GLN992 THR993 VAL994 MET995 THR996 VAL997 VAL998 TYR999 GLY1000 VAL1001 THR1002 ARG1003 TYR1004 GLY1005 GLY1006 ARG1007 LEU1008 GLN1009 ILE1010 GLU1011 LYS1012 ARG1013 LEU1014 ARG1015 GLU1016 LEU1017 SER1018 ASP1019 PHE1020 PRO1021 GLN1022 GLU1023 PHE1024 VAL1025 TRP1026 GLU1027 ALA1028 SER1029 HIS1030 TYR1031 LEU1032 VAL1033 ARG1034 GLN1035 VAL1036 PHE1037 LYS1038 SER1039 LEU1040 GLN1041 GLU1042 MET1043 PHE1044 SER1045 GLY1046 THR1047 ARG1048 ALA1049 ILE1050 GLN1051 HIS1052 TRP1053 LEU1054 THR1055 GLU1056 SER1057 ALA1058 ARG1059 LEU1060 ILE1061 SER1062 HIS1063 MET1064 GLY1065 SER1066 VAL1067 VAL1068 GLU1069 TRP1070 VAL1071 THR1072 PRO1073 LEU1074 GLY1075 VAL1076 PRO1077 VAL1078 ILE1079 GLN1080 PRO1081 TYR1082 ARG1083 LEU1084 ASP1085 SER1107 ARG1108 LYS1109 PRO1110 ASN1111 THR1112 ARG1113 LYS1114 GLN1115 LYS1116 ASN1117 GLY1118 PHE1119 PRO1120 PRO1121 ASN1122 PHE1123 ILE1124 HIS1125 SER1126 LEU1127 ASP1128 SER1129 SER1130 HIS1131 MET1132 MET1133 LEU1134 THR1135 ALA1136 LEU1137 HIS1138 CYS1139 TYR1140 ARG1141 LYS1142 GLY1143 LEU1144 THR1145 PHE1146 VAL1147 SER1148 VAL1149 HIS1150 ASP1151 CYS1152 TYR1153 TRP1154 THR1155 HIS1156 ALA1157 ALA1158 ASP1159 VAL1160 SER1161 VAL1162 MET1163 ASN1164 GLN1165 VAL1166 CYS1167 ARG1168 GLU1169 GLN1170 PHE1171 VAL1172 ARG1173 LEU1174 HIS1175 SER1176 GLU1177 PRO1178 ILE1179 LEU1180 GLN1181 ASP1182 LEU1183 SER1184 ARG1185 PHE1186 LEU1187 VAL1188 LYS1189 ARG1190 PHE1191 CYS1192 SER1193 GLU1194 PRO1195 GLN1196 LYS1197 ILE1198 LEU1199 GLU1200 ALA1201 SER1202 GLN1203 LEU1204 LYS1205 GLU1206 THR1207 LEU1208 GLN1209 ALA1210 VAL1211 PRO1212 LYS1213 PRO1214 GLY1215 ALA1216 PHE1217 ASP1218 LEU1219 GLU1220 GLN1221 VAL1222 LYS1223 ARG1224 SER1225 THR1226 TYR1227 PHE1228 PHE1229 SER1230
Nucleic acids
Unit 3 G1 C2 G3 G4 C5 G6 C7 G8 C9
Other macromolecules
Unit 2 DA-26 DT-25 DG-24 DG-23 DG-22 DG-21 DT-20 DA-19 DA-18 DC-11 DG-10 DA-9 DC-8 DG-7 DC-6 DC-5 DA-4 DG-3 DA-2 DC-1 DG0
Unit 4 DC-9 DG-8 DT-7 DC-6 DT-5 DG-4 DG-3 DC-2 DG-1 DT0 DG1 DC2 DG3 DC4 DG5 DC6 DC7 DG8 DC9 DT10 DA11 DC12 DC13 DC14 DC15 DA16 DT17
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany