4BGV - Sequence, Chains, Asymmetric and Biological Units

• Title: 1.8 A RESOLUTION STRUCTURE OF THE MALATE DEHYDROGENASE FROM PICROPHILUS TORRIDUS IN ITS APO FORM
• Keywords: HYPERACIDOPHILE, OXIDOREDUCTASE, TRICARBOXYLIC ACID CYCLE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4BGV	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	MALATE DEHYDROGENASE	A	323	2470	0
2	Protein	MALATE DEHYDROGENASE	B	323	2470	0
3	Protein	MALATE DEHYDROGENASE	C	323	2470	0
4	Protein	MALATE DEHYDROGENASE	D	323	2470	0
5	Ligand	MALATE DEHYDROGENASE	A	2	0	14
6	Ligand	MALATE DEHYDROGENASE	B	4	0	34
7	Ligand	MALATE DEHYDROGENASE	C	4	0	31
8	Ligand	MALATE DEHYDROGENASE	D	3	0	21
9	Water			1219	0	1219
total				2524	9880	1319

Proteins

Unit 1	ALA 2 ARG 3 SER 4 LYS 5 ILE 6 SER 7 VAL 8 ILE 9 GLY 10 ALA 11 GLY 12 ALA 13 VAL 14 GLY 15 ALA 16 THR 17 VAL 18 ALA 19 GLN 20 THR 21 LEU 22 ALA 23 ILE 24 ARG 25 GLN 26 THR 27 GLY 28 ASP 29 ILE 30 TYR 31 ILE 32 PHE 33 ASP 34 ILE 35 VAL 36 ASP 37 GLY 38 LEU 39 ALA 40 GLU 41 GLY 42 LYS 43 ALA 44 LEU 45 ASP 46 ILE 47 LEU 48 GLU 49 GLY 50 ALA 51 PRO 52 HIS 53 TRP 54 GLY 55 TYR 56 ASP 57 LEU 58 ASP 59 ILE 60 LYS 61 GLY 62 PHE 63 CYS 64 THR 65 ALA 66 ASP 67 GLU 68 SER 69 LYS 70 TYR 71 ALA 72 GLU 73 MET 74 LYS 75 GLY 76 SER 77 ASP 78 VAL 79 ILE 80 VAL 81 VAL 82 THR 83 ALA 84 GLY 85 LEU 86 ALA 87 ARG 88 LYS 89 PRO 90 GLY 91 MET 92 SER 93 ARG 94 ASP 95 ASP 96 LEU 97 LEU 98 LEU 99 LYS 100 ASN 101 ILE 102 GLY 103 ILE 104 MET 105 LYS 106 SER 107 VAL 108 GLY 109 GLU 110 ALA 111 ILE 112 LYS 113 LYS 114 TYR 115 SER 116 PRO 117 GLU 118 SER 119 LYS 120 ILE 121 VAL 122 VAL 123 VAL 124 THR 125 ASN 126 PRO 127 ALA 128 ASP 129 ILE 130 MET 131 ALA 132 TYR 133 ALA 134 ILE 135 TYR 136 LYS 137 ALA 138 SER 139 GLY 140 ILE 141 SER 142 PRO 143 GLU 144 ARG 145 ILE 146 ILE 147 GLY 148 LEU 149 GLY 150 GLY 151 SER 152 LEU 153 ASP 154 SER 155 THR 156 ARG 157 PHE 158 ARG 159 THR 160 PHE 161 LEU 162 ALA 163 GLN 164 GLU 165 LEU 166 ASN 167 VAL 168 SER 169 PHE 170 GLU 171 ASP 172 VAL 173 ASN 174 ALA 175 PHE 176 VAL 177 ILE 178 GLY 179 GLY 180 HIS 181 GLY 182 ASP 183 ASP 184 MET 185 VAL 186 PRO 187 PHE 188 ILE 189 ARG 190 TYR 191 SER 192 ASN 193 VAL 194 SER 195 GLY 196 ILE 197 PRO 198 ILE 199 GLU 200 ASP 201 LEU 202 LEU 203 PRO 204 ARG 205 GLU 206 LYS 207 ILE 208 ASP 209 GLU 210 ILE 211 VAL 212 LYS 213 ARG 214 THR 215 ARG 216 PHE 217 GLY 218 GLY 219 GLY 220 GLU 221 ILE 222 VAL 223 ASN 224 LEU 225 TYR 226 LYS 227 THR 228 GLY 229 SER 230 ALA 231 PHE 232 TYR 233 ALA 234 PRO 235 GLY 236 ILE 237 SER 238 ILE 239 ALA 240 VAL 241 MET 242 VAL 243 GLU 244 SER 245 ILE 246 VAL 247 ASN 248 ASP 249 ARG 250 LYS 251 ARG 252 VAL 253 ILE 254 PRO 255 CYS 256 ALA 257 ALA 258 TYR 259 ILE 260 THR 261 GLY 262 GLU 263 HIS 264 SER 265 LYS 266 THR 267 TYR 268 LEU 269 VAL 270 ASN 271 ASN 272 LEU 273 PHE 274 ILE 275 GLY 276 VAL 277 PRO 278 ILE 279 LYS 280 ILE 281 GLY 282 LYS 283 ASN 284 GLY 285 VAL 286 GLU 287 LYS 288 ILE 289 TYR 290 ASP 291 LEU 292 LYS 293 PHE 294 ASN 295 GLU 296 ASP 297 GLU 298 LEU 299 GLU 300 ALA 301 TRP 302 LYS 303 LYS 304 SER 305 VAL 306 GLU 307 SER 308 VAL 309 LYS 310 LYS 311 ASN 312 SER 313 ALA 314 ILE 315 ALA 316 ASP 317 ASP 318 TYR 319 PHE 320 ALA 321 LYS 322 ASN 323 GLN 324
Unit 2	ALA 2 ARG 3 SER 4 LYS 5 ILE 6 SER 7 VAL 8 ILE 9 GLY 10 ALA 11 GLY 12 ALA 13 VAL 14 GLY 15 ALA 16 THR 17 VAL 18 ALA 19 GLN 20 THR 21 LEU 22 ALA 23 ILE 24 ARG 25 GLN 26 THR 27 GLY 28 ASP 29 ILE 30 TYR 31 ILE 32 PHE 33 ASP 34 ILE 35 VAL 36 ASP 37 GLY 38 LEU 39 ALA 40 GLU 41 GLY 42 LYS 43 ALA 44 LEU 45 ASP 46 ILE 47 LEU 48 GLU 49 GLY 50 ALA 51 PRO 52 HIS 53 TRP 54 GLY 55 TYR 56 ASP 57 LEU 58 ASP 59 ILE 60 LYS 61 GLY 62 PHE 63 CYS 64 THR 65 ALA 66 ASP 67 GLU 68 SER 69 LYS 70 TYR 71 ALA 72 GLU 73 MET 74 LYS 75 GLY 76 SER 77 ASP 78 VAL 79 ILE 80 VAL 81 VAL 82 THR 83 ALA 84 GLY 85 LEU 86 ALA 87 ARG 88 LYS 89 PRO 90 GLY 91 MET 92 SER 93 ARG 94 ASP 95 ASP 96 LEU 97 LEU 98 LEU 99 LYS 100 ASN 101 ILE 102 GLY 103 ILE 104 MET 105 LYS 106 SER 107 VAL 108 GLY 109 GLU 110 ALA 111 ILE 112 LYS 113 LYS 114 TYR 115 SER 116 PRO 117 GLU 118 SER 119 LYS 120 ILE 121 VAL 122 VAL 123 VAL 124 THR 125 ASN 126 PRO 127 ALA 128 ASP 129 ILE 130 MET 131 ALA 132 TYR 133 ALA 134 ILE 135 TYR 136 LYS 137 ALA 138 SER 139 GLY 140 ILE 141 SER 142 PRO 143 GLU 144 ARG 145 ILE 146 ILE 147 GLY 148 LEU 149 GLY 150 GLY 151 SER 152 LEU 153 ASP 154 SER 155 THR 156 ARG 157 PHE 158 ARG 159 THR 160 PHE 161 LEU 162 ALA 163 GLN 164 GLU 165 LEU 166 ASN 167 VAL 168 SER 169 PHE 170 GLU 171 ASP 172 VAL 173 ASN 174 ALA 175 PHE 176 VAL 177 ILE 178 GLY 179 GLY 180 HIS 181 GLY 182 ASP 183 ASP 184 MET 185 VAL 186 PRO 187 PHE 188 ILE 189 ARG 190 TYR 191 SER 192 ASN 193 VAL 194 SER 195 GLY 196 ILE 197 PRO 198 ILE 199 GLU 200 ASP 201 LEU 202 LEU 203 PRO 204 ARG 205 GLU 206 LYS 207 ILE 208 ASP 209 GLU 210 ILE 211 VAL 212 LYS 213 ARG 214 THR 215 ARG 216 PHE 217 GLY 218 GLY 219 GLY 220 GLU 221 ILE 222 VAL 223 ASN 224 LEU 225 TYR 226 LYS 227 THR 228 GLY 229 SER 230 ALA 231 PHE 232 TYR 233 ALA 234 PRO 235 GLY 236 ILE 237 SER 238 ILE 239 ALA 240 VAL 241 MET 242 VAL 243 GLU 244 SER 245 ILE 246 VAL 247 ASN 248 ASP 249 ARG 250 LYS 251 ARG 252 VAL 253 ILE 254 PRO 255 CYS 256 ALA 257 ALA 258 TYR 259 ILE 260 THR 261 GLY 262 GLU 263 HIS 264 SER 265 LYS 266 THR 267 TYR 268 LEU 269 VAL 270 ASN 271 ASN 272 LEU 273 PHE 274 ILE 275 GLY 276 VAL 277 PRO 278 ILE 279 LYS 280 ILE 281 GLY 282 LYS 283 ASN 284 GLY 285 VAL 286 GLU 287 LYS 288 ILE 289 TYR 290 ASP 291 LEU 292 LYS 293 PHE 294 ASN 295 GLU 296 ASP 297 GLU 298 LEU 299 GLU 300 ALA 301 TRP 302 LYS 303 LYS 304 SER 305 VAL 306 GLU 307 SER 308 VAL 309 LYS 310 LYS 311 ASN 312 SER 313 ALA 314 ILE 315 ALA 316 ASP 317 ASP 318 TYR 319 PHE 320 ALA 321 LYS 322 ASN 323 GLN 324
Unit 3	ALA 2 ARG 3 SER 4 LYS 5 ILE 6 SER 7 VAL 8 ILE 9 GLY 10 ALA 11 GLY 12 ALA 13 VAL 14 GLY 15 ALA 16 THR 17 VAL 18 ALA 19 GLN 20 THR 21 LEU 22 ALA 23 ILE 24 ARG 25 GLN 26 THR 27 GLY 28 ASP 29 ILE 30 TYR 31 ILE 32 PHE 33 ASP 34 ILE 35 VAL 36 ASP 37 GLY 38 LEU 39 ALA 40 GLU 41 GLY 42 LYS 43 ALA 44 LEU 45 ASP 46 ILE 47 LEU 48 GLU 49 GLY 50 ALA 51 PRO 52 HIS 53 TRP 54 GLY 55 TYR 56 ASP 57 LEU 58 ASP 59 ILE 60 LYS 61 GLY 62 PHE 63 CYS 64 THR 65 ALA 66 ASP 67 GLU 68 SER 69 LYS 70 TYR 71 ALA 72 GLU 73 MET 74 LYS 75 GLY 76 SER 77 ASP 78 VAL 79 ILE 80 VAL 81 VAL 82 THR 83 ALA 84 GLY 85 LEU 86 ALA 87 ARG 88 LYS 89 PRO 90 GLY 91 MET 92 SER 93 ARG 94 ASP 95 ASP 96 LEU 97 LEU 98 LEU 99 LYS 100 ASN 101 ILE 102 GLY 103 ILE 104 MET 105 LYS 106 SER 107 VAL 108 GLY 109 GLU 110 ALA 111 ILE 112 LYS 113 LYS 114 TYR 115 SER 116 PRO 117 GLU 118 SER 119 LYS 120 ILE 121 VAL 122 VAL 123 VAL 124 THR 125 ASN 126 PRO 127 ALA 128 ASP 129 ILE 130 MET 131 ALA 132 TYR 133 ALA 134 ILE 135 TYR 136 LYS 137 ALA 138 SER 139 GLY 140 ILE 141 SER 142 PRO 143 GLU 144 ARG 145 ILE 146 ILE 147 GLY 148 LEU 149 GLY 150 GLY 151 SER 152 LEU 153 ASP 154 SER 155 THR 156 ARG 157 PHE 158 ARG 159 THR 160 PHE 161 LEU 162 ALA 163 GLN 164 GLU 165 LEU 166 ASN 167 VAL 168 SER 169 PHE 170 GLU 171 ASP 172 VAL 173 ASN 174 ALA 175 PHE 176 VAL 177 ILE 178 GLY 179 GLY 180 HIS 181 GLY 182 ASP 183 ASP 184 MET 185 VAL 186 PRO 187 PHE 188 ILE 189 ARG 190 TYR 191 SER 192 ASN 193 VAL 194 SER 195 GLY 196 ILE 197 PRO 198 ILE 199 GLU 200 ASP 201 LEU 202 LEU 203 PRO 204 ARG 205 GLU 206 LYS 207 ILE 208 ASP 209 GLU 210 ILE 211 VAL 212 LYS 213 ARG 214 THR 215 ARG 216 PHE 217 GLY 218 GLY 219 GLY 220 GLU 221 ILE 222 VAL 223 ASN 224 LEU 225 TYR 226 LYS 227 THR 228 GLY 229 SER 230 ALA 231 PHE 232 TYR 233 ALA 234 PRO 235 GLY 236 ILE 237 SER 238 ILE 239 ALA 240 VAL 241 MET 242 VAL 243 GLU 244 SER 245 ILE 246 VAL 247 ASN 248 ASP 249 ARG 250 LYS 251 ARG 252 VAL 253 ILE 254 PRO 255 CYS 256 ALA 257 ALA 258 TYR 259 ILE 260 THR 261 GLY 262 GLU 263 HIS 264 SER 265 LYS 266 THR 267 TYR 268 LEU 269 VAL 270 ASN 271 ASN 272 LEU 273 PHE 274 ILE 275 GLY 276 VAL 277 PRO 278 ILE 279 LYS 280 ILE 281 GLY 282 LYS 283 ASN 284 GLY 285 VAL 286 GLU 287 LYS 288 ILE 289 TYR 290 ASP 291 LEU 292 LYS 293 PHE 294 ASN 295 GLU 296 ASP 297 GLU 298 LEU 299 GLU 300 ALA 301 TRP 302 LYS 303 LYS 304 SER 305 VAL 306 GLU 307 SER 308 VAL 309 LYS 310 LYS 311 ASN 312 SER 313 ALA 314 ILE 315 ALA 316 ASP 317 ASP 318 TYR 319 PHE 320 ALA 321 LYS 322 ASN 323 GLN 324
Unit 4	ALA 2 ARG 3 SER 4 LYS 5 ILE 6 SER 7 VAL 8 ILE 9 GLY 10 ALA 11 GLY 12 ALA 13 VAL 14 GLY 15 ALA 16 THR 17 VAL 18 ALA 19 GLN 20 THR 21 LEU 22 ALA 23 ILE 24 ARG 25 GLN 26 THR 27 GLY 28 ASP 29 ILE 30 TYR 31 ILE 32 PHE 33 ASP 34 ILE 35 VAL 36 ASP 37 GLY 38 LEU 39 ALA 40 GLU 41 GLY 42 LYS 43 ALA 44 LEU 45 ASP 46 ILE 47 LEU 48 GLU 49 GLY 50 ALA 51 PRO 52 HIS 53 TRP 54 GLY 55 TYR 56 ASP 57 LEU 58 ASP 59 ILE 60 LYS 61 GLY 62 PHE 63 CYS 64 THR 65 ALA 66 ASP 67 GLU 68 SER 69 LYS 70 TYR 71 ALA 72 GLU 73 MET 74 LYS 75 GLY 76 SER 77 ASP 78 VAL 79 ILE 80 VAL 81 VAL 82 THR 83 ALA 84 GLY 85 LEU 86 ALA 87 ARG 88 LYS 89 PRO 90 GLY 91 MET 92 SER 93 ARG 94 ASP 95 ASP 96 LEU 97 LEU 98 LEU 99 LYS 100 ASN 101 ILE 102 GLY 103 ILE 104 MET 105 LYS 106 SER 107 VAL 108 GLY 109 GLU 110 ALA 111 ILE 112 LYS 113 LYS 114 TYR 115 SER 116 PRO 117 GLU 118 SER 119 LYS 120 ILE 121 VAL 122 VAL 123 VAL 124 THR 125 ASN 126 PRO 127 ALA 128 ASP 129 ILE 130 MET 131 ALA 132 TYR 133 ALA 134 ILE 135 TYR 136 LYS 137 ALA 138 SER 139 GLY 140 ILE 141 SER 142 PRO 143 GLU 144 ARG 145 ILE 146 ILE 147 GLY 148 LEU 149 GLY 150 GLY 151 SER 152 LEU 153 ASP 154 SER 155 THR 156 ARG 157 PHE 158 ARG 159 THR 160 PHE 161 LEU 162 ALA 163 GLN 164 GLU 165 LEU 166 ASN 167 VAL 168 SER 169 PHE 170 GLU 171 ASP 172 VAL 173 ASN 174 ALA 175 PHE 176 VAL 177 ILE 178 GLY 179 GLY 180 HIS 181 GLY 182 ASP 183 ASP 184 MET 185 VAL 186 PRO 187 PHE 188 ILE 189 ARG 190 TYR 191 SER 192 ASN 193 VAL 194 SER 195 GLY 196 ILE 197 PRO 198 ILE 199 GLU 200 ASP 201 LEU 202 LEU 203 PRO 204 ARG 205 GLU 206 LYS 207 ILE 208 ASP 209 GLU 210 ILE 211 VAL 212 LYS 213 ARG 214 THR 215 ARG 216 PHE 217 GLY 218 GLY 219 GLY 220 GLU 221 ILE 222 VAL 223 ASN 224 LEU 225 TYR 226 LYS 227 THR 228 GLY 229 SER 230 ALA 231 PHE 232 TYR 233 ALA 234 PRO 235 GLY 236 ILE 237 SER 238 ILE 239 ALA 240 VAL 241 MET 242 VAL 243 GLU 244 SER 245 ILE 246 VAL 247 ASN 248 ASP 249 ARG 250 LYS 251 ARG 252 VAL 253 ILE 254 PRO 255 CYS 256 ALA 257 ALA 258 TYR 259 ILE 260 THR 261 GLY 262 GLU 263 HIS 264 SER 265 LYS 266 THR 267 TYR 268 LEU 269 VAL 270 ASN 271 ASN 272 LEU 273 PHE 274 ILE 275 GLY 276 VAL 277 PRO 278 ILE 279 LYS 280 ILE 281 GLY 282 LYS 283 ASN 284 GLY 285 VAL 286 GLU 287 LYS 288 ILE 289 TYR 290 ASP 291 LEU 292 LYS 293 PHE 294 ASN 295 GLU 296 ASP 297 GLU 298 LEU 299 GLU 300 ALA 301 TRP 302 LYS 303 LYS 304 SER 305 VAL 306 GLU 307 SER 308 VAL 309 LYS 310 LYS 311 ASN 312 SER 313 ALA 314 ILE 315 ALA 316 ASP 317 ASP 318 TYR 319 PHE 320 ALA 321 LYS 322 ASN 323 GLN 324

Ligands

Unit 5	PEG 1325 PEG 1326
Unit 6	CIT 1325 PEG 1326 PEG 1327 PEG 1328
Unit 7	PEG 1325 PG6 1326 PEG 1327 PEG 1328
Unit 8	PEG 1325 PEG 1326 PEG 1327