4B9L - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH THE OXI FORMAMIDOPYRIMIDINE-DA DNA LESION IN THE PRE-INSERTION SITE
• Keywords: TRANSFERASE-DNA COMPLEX, OXIDATIVE DNA LESION, DNA DAMAGE, T LESION SYNTHESIS, REPLICATION
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4B9L	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	DNA POLYMERASE I	A	580	4653	0
2	Other macromolecule	5'-D(*GP*CP*CP*TP*GP*AP*CP*TP*CP*TP)-3'	B	10	201	0
3	Other macromolecule		C	11	209	22
4	Ligand		D	2	0	23
5	Ligand	DNA POLYMERASE I	A	5	0	21
6	Water			226	0	227
total				834	5063	293

Proteins

Unit 1

ALA 297 LYS 298 MET 299 ALA 300 PHE 301 THR 302 LEU 303 ALA 304 ASP 305 ARG 306 VAL 307 THR 308 GLU 309 GLU 310 MET 311 LEU 312 ALA 313 ASP 314 LYS 315 ALA 316 ALA 317 LEU 318 VAL 319 VAL 320 GLU 321 VAL 322 VAL 323 GLU 324 GLU 325 ASN 326 TYR 327 HIS 328 ASP 329 ALA 330 PRO 331 ILE 332 VAL 333 GLY 334 ILE 335 ALA 336 VAL 337 VAL 338 ASN 339 GLU 340 HIS 341 GLY 342 ARG 343 PHE 344 PHE 345 LEU 346 ARG 347 PRO 348 GLU 349 THR 350 ALA 351 LEU 352 ALA 353 ASP 354 PRO 355 GLN 356 PHE 357 VAL 358 ALA 359 TRP 360 LEU 361 GLY 362 ASP 363 GLU 364 THR 365 LYS 366 LYS 367 LYS 368 SER 369 MET 370 PHE 371 ASP 372 SER 373 LYS 374 ARG 375 ALA 376 ALA 377 VAL 378 ALA 379 LEU 380 LYS 381 TRP 382 LYS 383 GLY 384 ILE 385 GLU 386 LEU 387 CYS 388 GLY 389 VAL 390 SER 391 PHE 392 ASP 393 LEU 394 LEU 395 LEU 396 ALA 397 ALA 398 TYR 399 LEU 400 LEU 401 ASP 402 PRO 403 ALA 404 GLN 405 GLY 406 VAL 407 ASP 408 ASP 409 VAL 410 ALA 411 ALA 412 ALA 413 ALA 414 LYS 415 MET 416 LYS 417 GLN 418 TYR 419 GLU 420 ALA 421 VAL 422 ARG 423 PRO 424 ASP 425 GLU 426 ALA 427 VAL 428 TYR 429 GLY 430 LYS 431 GLY 432 ALA 433 LYS 434 ARG 435 ALA 436 VAL 437 PRO 438 ASP 439 GLU 440 PRO 441 VAL 442 LEU 443 ALA 444 GLU 445 HIS 446 LEU 447 VAL 448 ARG 449 LYS 450 ALA 451 ALA 452 ALA 453 ILE 454 TRP 455 ALA 456 LEU 457 GLU 458 ARG 459 PRO 460 PHE 461 LEU 462 ASP 463 GLU 464 LEU 465 ARG 466 ARG 467 ASN 468 GLU 469 GLN 470 ASP 471 ARG 472 LEU 473 LEU 474 VAL 475 GLU 476 LEU 477 GLU 478 GLN 479 PRO 480 LEU 481 SER 482 SER 483 ILE 484 LEU 485 ALA 486 GLU 487 MET 488 GLU 489 PHE 490 ALA 491 GLY 492 VAL 493 LYS 494 VAL 495 ASP 496 THR 497 LYS 498 ARG 499 LEU 500 GLU 501 GLN 502 MET 503 GLY 504 GLU 505 GLU 506 LEU 507 ALA 508 GLU 509 GLN 510 LEU 511 ARG 512 THR 513 VAL 514 GLU 515 GLN 516 ARG 517 ILE 518 TYR 519 GLU 520 LEU 521 ALA 522 GLY 523 GLN 524 GLU 525 PHE 526 ASN 527 ILE 528 ASN 529 SER 530 PRO 531 LYS 532 GLN 533 LEU 534 GLY 535 VAL 536 ILE 537 LEU 538 PHE 539 GLU 540 LYS 541 LEU 542 GLN 543 LEU 544 PRO 545 VAL 546 LEU 547 LYS 548 LYS 549 SER 550 LYS 551 THR 552 GLY 553 TYR 554 SER 555 THR 556 SER 557 ALA 558 ASP 559 VAL 560 LEU 561 GLU 562 LYS 563 LEU 564 ALA 565 PRO 566 TYR 567 HIS 568 GLU 569 ILE 570 VAL 571 GLU 572 ASN 573 ILE 574 LEU 575 HIS 576 TYR 577 ARG 578 GLN 579 LEU 580 GLY 581 LYS 582 LEU 583 GLN 584 SER 585 THR 586 TYR 587 ILE 588 GLU 589 GLY 590 LEU 591 LEU 592 LYS 593 VAL 594 VAL 595 ARG 596 PRO 597 ASP 598 THR 599 LYS 600 LYS 601 VAL 602 HIS 603 THR 604 ILE 605 PHE 606 ASN 607 GLN 608 ALA 609 LEU 610 THR 611 GLN 612 THR 613 GLY 614 ARG 615 LEU 616 SER 617 SER 618 THR 619 GLU 620 PRO 621 ASN 622 LEU 623 GLN 624 ASN 625 ILE 626 PRO 627 ILE 628 ARG 629 LEU 630 GLU 631 GLU 632 GLY 633 ARG 634 LYS 635 ILE 636 ARG 637 GLN 638 ALA 639 PHE 640 VAL 641 PRO 642 SER 643 GLU 644 SER 645 ASP 646 TRP 647 LEU 648 ILE 649 PHE 650 ALA 651 ALA 652 ASP 653 TYR 654 SER 655 GLN 656 ILE 657 GLU 658 LEU 659 ARG 660 VAL 661 LEU 662 ALA 663 HIS 664 ILE 665 ALA 666 GLU 667 ASP 668 ASP 669 ASN 670 LEU 671 MET 672 GLU 673 ALA 674 PHE 675 ARG 676 ARG 677 ASP 678 LEU 679 ASP 680 ILE 681 HIS 682 THR 683 LYS 684 THR 685 ALA 686 MET 687 ASP 688 ILE 689 PHE 690 GLN 691 VAL 692 SER 693 GLU 694 ASP 695 GLU 696 VAL 697 THR 698 PRO 699 ASN 700 MET 701 ARG 702 ARG 703 GLN 704 ALA 705 LYS 706 ALA 707 VAL 708 ASN 709 PHE 710 GLY 711 ILE 712 VAL 713 TYR 714 GLY 715 ILE 716 SER 717 ASP 718 TYR 719 GLY 720 LEU 721 ALA 722 GLN 723 ASN 724 LEU 725 ASN 726 ILE 727 SER 728 ARG 729 LYS 730 GLU 731 ALA 732 ALA 733 GLU 734 PHE 735 ILE 736 GLU 737 ARG 738 TYR 739 PHE 740 GLU 741 SER 742 PHE 743 PRO 744 GLY 745 VAL 746 LYS 747 ARG 748 TYR 749 MET 750 GLU 751 ASN 752 ILE 753 VAL 754 GLN 755 GLU 756 ALA 757 LYS 758 GLN 759 LYS 760 GLY 761 TYR 762 VAL 763 THR 764 THR 765 LEU 766 LEU 767 HIS 768 ARG 769 ARG 770 ARG 771 TYR 772 LEU 773 PRO 774 ASP 775 ILE 776 THR 777 SER 778 ARG 779 ASN 780 PHE 781 ASN 782 VAL 783 ARG 784 SER 785 PHE 786 ALA 787 GLU 788 ARG 789 MET 790 ALA 791 MET 792 ASN 793 THR 794 PRO 795 ILE 796 GLN 797 GLY 798 SER 799 ALA 800 ALA 801 ASP 802 ILE 803 ILE 804 LYS 805 LYS 806 ALA 807 MET 808 ILE 809 ASP 810 LEU 811 ASN 812 ALA 813 ARG 814 LEU 815 LYS 816 GLU 817 GLU 818 ARG 819 LEU 820 GLN 821 ALA 822 ARG 823 LEU 824 LEU 825 LEU 826 GLN 827 VAL 828 HIS 829 ASP 830 GLU 831 LEU 832 ILE 833 LEU 834 GLU 835 ALA 836 PRO 837 LYS 838 GLU 839 GLU 840 MET 841 GLU 842 ARG 843 LEU 844 CYS 845 ARG 846 LEU 847 VAL 848 PRO 849 GLU 850 VAL 851 MET 852 GLU 853 GLN 854 ALA 855 VAL 856 THR 857 LEU 858 ARG 859 VAL 860 PRO 861 LEU 862 LYS 863 VAL 864 ASP 865 TYR 866 HIS 867 TYR 868 GLY 869 SER 870 THR 871 TRP 872 TYR 873 ASP 874 ALA 875 LYS 876

Other macromolecules

Unit 2	DG 1 DC 2 DC 3 DT 4 DG 5 DA 6 DC 7 DT 8 DC 9 DT 10
Unit 3	FAX 4 DA 5 DG 6 DA 7 DG 8 DT 9 DC 10 DA 11 DG 12 DG 13 DC 14

Ligands

Unit 4	GLC 1 FRU 2
Unit 5	MG 1877 SO4 1878 SO4 1879 SO4 1880 SO4 1881