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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF HUMAN GDP-L-FUCOSE SYNTHASE WITH BOUND GDP, RHOMBOHEDRAL CRYSTAL FORM
Keywords OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4B8Z     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GDP-L-FUCOSE SYNTHASE  A 308 2176 0
2  Protein   GDP-L-FUCOSE SYNTHASE  B 320 2427 0
3  Protein   GDP-L-FUCOSE SYNTHASE  C 313 2301 0
4  Protein   GDP-L-FUCOSE SYNTHASE  D 313 2266 0
5  Ligand   GDP-L-FUCOSE SYNTHASE  A 2 0 76
6  Ligand   GDP-L-FUCOSE SYNTHASE  B 2 0 76
7  Ligand   GDP-L-FUCOSE SYNTHASE  C 2 0 76
8  Ligand   GDP-L-FUCOSE SYNTHASE  D 2 0 76
9 Water     18 0 18
total       1280 9170 322
Proteins
Unit 1 MET8 ARG9 ILE10 LEU11 VAL12 THR13 GLY14 GLY15 SER16 GLY17 LEU18 VAL19 GLY20 LYS21 ALA22 ILE23 GLN24 LYS25 VAL26 VAL27 ALA28 ASP29 GLY30 ALA31 GLY32 LEU33 PRO34 GLY35 GLU36 ASP37 TRP38 VAL39 PHE40 VAL41 SER42 SER43 LYS44 ASP45 ALA46 ASP47 LEU48 THR49 ASP50 THR51 ALA52 GLN53 THR54 ARG55 ALA56 LEU57 PHE58 GLU59 LYS60 VAL61 GLN62 PRO63 THR64 HIS65 VAL66 ILE67 HIS68 LEU69 ALA70 ALA71 MET72 VAL73 GLY74 GLY75 LEU76 PHE77 ARG78 ASN79 ILE80 LYS81 TYR82 ASN83 LEU84 ASP85 PHE86 TRP87 ARG88 LYS89 ASN90 VAL91 HIS92 MET93 ASN94 ASP95 ASN96 VAL97 LEU98 HIS99 SER100 ALA101 PHE102 GLU103 VAL104 GLY105 ALA106 ARG107 LYS108 VAL109 VAL110 SER111 CYS112 LEU113 SER114 THR115 CYS116 ILE117 PHE118 PRO119 ASP120 LYS121 THR122 THR123 TYR124 PRO125 ILE126 ASP127 GLU128 THR129 MET130 ILE131 HIS132 ASN133 GLY134 PRO135 PRO136 HIS137 ASN138 SER139 ASN140 PHE141 GLY142 TYR143 SER144 TYR145 ALA146 LYS147 ARG148 MET149 ILE150 ASP151 VAL152 GLN153 ASN154 ARG155 ALA156 TYR157 PHE158 GLN159 GLN160 TYR161 GLY162 CYS163 THR164 PHE165 THR166 ALA167 VAL168 ILE169 PRO170 THR171 ASN172 VAL173 PHE174 GLY175 PRO176 HIS177 ASP178 ASN179 PHE180 ASN181 ILE182 GLU183 ASP184 GLY185 HIS186 VAL187 LEU188 PRO189 GLY190 LEU191 ILE192 HIS193 LYS194 VAL195 HIS196 LEU197 ALA198 LYS199 SER200 SER201 GLY202 SER203 ALA204 LEU205 THR206 VAL207 TRP208 GLY209 THR210 GLY211 ASN212 PRO213 ARG214 ARG215 GLN216 PHE217 ILE218 TYR219 SER220 LEU221 ASP222 LEU223 ALA224 GLN225 LEU226 PHE227 ILE228 TRP229 VAL230 LEU231 ARG232 GLU233 TYR234 ASN235 GLU236 VAL237 GLU238 PRO239 ILE240 ILE241 LEU242 SER243 VAL244 GLY245 GLU246 GLU247 ASP248 GLU249 VAL250 SER251 ILE252 LYS253 GLU254 ALA255 ALA256 GLU257 ALA258 VAL259 VAL260 GLU261 ALA262 MET263 ASP264 PHE265 HIS266 GLY267 GLU268 VAL269 THR270 PHE271 ASP272 THR273 THR274 LYS275 SER276 ASP277 GLY278 GLN279 PHE280 LYS281 LYS282 THR283 ALA284 SER285 ASN286 SER287 LYS288 LEU289 ARG290 THR291 TYR292 LEU293 PRO294 ASP295 PHE296 ARG297 PHE298 THR299 PRO300 PHE301 LYS302 GLN303 ALA304 VAL305 LYS306 GLU307 THR308 CYS309 ALA310 TRP311 PHE312 THR313 ASP314 ASN315
Unit 2 GLU-7 ASN-6 LEU-5 TYR-4 PHE-3 GLN-2 SER-1 MET8 ARG9 ILE10 LEU11 VAL12 THR13 GLY14 GLY15 SER16 GLY17 LEU18 VAL19 GLY20 LYS21 ALA22 ILE23 GLN24 LYS25 VAL26 VAL27 ALA28 ASP29 GLY30 ALA31 GLY32 LEU33 PRO34 GLY35 GLU36 ASP37 TRP38 VAL39 PHE40 VAL41 SER42 SER43 LYS44 ASP45 ALA46 ASP47 LEU48 THR49 ASP50 THR51 ALA52 GLN53 THR54 ARG55 ALA56 LEU57 PHE58 GLU59 LYS60 VAL61 GLN62 PRO63 THR64 HIS65 VAL66 ILE67 HIS68 LEU69 ALA70 ALA71 MET72 VAL73 GLY74 GLY75 LEU76 PHE77 ARG78 ASN79 ILE80 LYS81 TYR82 ASN83 LEU84 ASP85 PHE86 TRP87 ARG88 LYS89 ASN90 VAL91 HIS92 MET93 ASN94 ASP95 ASN96 VAL97 LEU98 HIS99 SER100 ALA101 PHE102 GLU103 VAL104 GLY105 ALA106 ARG107 LYS108 VAL109 VAL110 SER111 CYS112 LEU113 SER114 THR115 CYS116 ILE117 PHE118 PRO119 ASP120 LYS121 THR122 THR123 TYR124 PRO125 ILE126 ASP127 GLU128 THR129 MET130 ILE131 HIS132 ASN133 GLY134 PRO135 PRO136 HIS137 ASN138 SER139 ASN140 PHE141 GLY142 TYR143 SER144 TYR145 ALA146 LYS147 ARG148 MET149 ILE150 ASP151 VAL152 GLN153 ASN154 ARG155 ALA156 TYR157 PHE158 GLN159 GLN160 TYR161 GLY162 CYS163 THR164 PHE165 THR166 ALA167 VAL168 ILE169 PRO170 THR171 ASN172 VAL173 PHE174 GLY175 PRO176 HIS177 ASP178 ASN179 PHE180 ASN181 ILE182 GLU183 ASP184 GLY185 HIS186 VAL187 LEU188 PRO189 GLY190 LEU191 ILE192 HIS193 LYS194 VAL195 HIS196 LEU197 ALA198 LYS199 SER200 SER201 GLY202 SER203 ALA204 LEU205 THR206 VAL207 TRP208 GLY209 THR210 GLY211 ASN212 PRO213 ARG214 ARG215 GLN216 PHE217 ILE218 TYR219 SER220 LEU221 ASP222 LEU223 ALA224 GLN225 LEU226 PHE227 ILE228 TRP229 VAL230 LEU231 ARG232 GLU233 TYR234 ASN235 GLU236 VAL237 GLU238 PRO239 ILE240 ILE241 LEU242 SER243 VAL244 GLY245 GLU246 GLU247 ASP248 GLU249 VAL250 SER251 ILE252 LYS253 GLU254 ALA255 ALA256 GLU257 ALA258 VAL259 VAL260 GLU261 ALA262 MET263 ASP264 PHE265 HIS266 GLY267 GLU268 VAL269 THR270 PHE271 ASP272 THR273 THR274 LYS275 SER276 ASP277 GLY278 GLN279 PHE280 LYS281 LYS282 THR283 ALA284 SER285 ASN286 SER287 LYS288 LEU289 ARG290 THR291 TYR292 LEU293 PRO294 ASP295 PHE296 ARG297 PHE298 THR299 PRO300 PHE301 LYS302 GLN303 ALA304 VAL305 LYS306 GLU307 THR308 CYS309 ALA310 TRP311 PHE312 THR313 ASP314 ASN315 TYR316 GLU317 GLN318 ALA319 ARG320
Unit 3 MET8 ARG9 ILE10 LEU11 VAL12 THR13 GLY14 GLY15 SER16 GLY17 LEU18 VAL19 GLY20 LYS21 ALA22 ILE23 GLN24 LYS25 VAL26 VAL27 ALA28 ASP29 GLY30 ALA31 GLY32 LEU33 PRO34 GLY35 GLU36 ASP37 TRP38 VAL39 PHE40 VAL41 SER42 SER43 LYS44 ASP45 ALA46 ASP47 LEU48 THR49 ASP50 THR51 ALA52 GLN53 THR54 ARG55 ALA56 LEU57 PHE58 GLU59 LYS60 VAL61 GLN62 PRO63 THR64 HIS65 VAL66 ILE67 HIS68 LEU69 ALA70 ALA71 MET72 VAL73 GLY74 GLY75 LEU76 PHE77 ARG78 ASN79 ILE80 LYS81 TYR82 ASN83 LEU84 ASP85 PHE86 TRP87 ARG88 LYS89 ASN90 VAL91 HIS92 MET93 ASN94 ASP95 ASN96 VAL97 LEU98 HIS99 SER100 ALA101 PHE102 GLU103 VAL104 GLY105 ALA106 ARG107 LYS108 VAL109 VAL110 SER111 CYS112 LEU113 SER114 THR115 CYS116 ILE117 PHE118 PRO119 ASP120 LYS121 THR122 THR123 TYR124 PRO125 ILE126 ASP127 GLU128 THR129 MET130 ILE131 HIS132 ASN133 GLY134 PRO135 PRO136 HIS137 ASN138 SER139 ASN140 PHE141 GLY142 TYR143 SER144 TYR145 ALA146 LYS147 ARG148 MET149 ILE150 ASP151 VAL152 GLN153 ASN154 ARG155 ALA156 TYR157 PHE158 GLN159 GLN160 TYR161 GLY162 CYS163 THR164 PHE165 THR166 ALA167 VAL168 ILE169 PRO170 THR171 ASN172 VAL173 PHE174 GLY175 PRO176 HIS177 ASP178 ASN179 PHE180 ASN181 ILE182 GLU183 ASP184 GLY185 HIS186 VAL187 LEU188 PRO189 GLY190 LEU191 ILE192 HIS193 LYS194 VAL195 HIS196 LEU197 ALA198 LYS199 SER200 SER201 GLY202 SER203 ALA204 LEU205 THR206 VAL207 TRP208 GLY209 THR210 GLY211 ASN212 PRO213 ARG214 ARG215 GLN216 PHE217 ILE218 TYR219 SER220 LEU221 ASP222 LEU223 ALA224 GLN225 LEU226 PHE227 ILE228 TRP229 VAL230 LEU231 ARG232 GLU233 TYR234 ASN235 GLU236 VAL237 GLU238 PRO239 ILE240 ILE241 LEU242 SER243 VAL244 GLY245 GLU246 GLU247 ASP248 GLU249 VAL250 SER251 ILE252 LYS253 GLU254 ALA255 ALA256 GLU257 ALA258 VAL259 VAL260 GLU261 ALA262 MET263 ASP264 PHE265 HIS266 GLY267 GLU268 VAL269 THR270 PHE271 ASP272 THR273 THR274 LYS275 SER276 ASP277 GLY278 GLN279 PHE280 LYS281 LYS282 THR283 ALA284 SER285 ASN286 SER287 LYS288 LEU289 ARG290 THR291 TYR292 LEU293 PRO294 ASP295 PHE296 ARG297 PHE298 THR299 PRO300 PHE301 LYS302 GLN303 ALA304 VAL305 LYS306 GLU307 THR308 CYS309 ALA310 TRP311 PHE312 THR313 ASP314 ASN315 TYR316 GLU317 GLN318 ALA319 ARG320
Unit 4 MET8 ARG9 ILE10 LEU11 VAL12 THR13 GLY14 GLY15 SER16 GLY17 LEU18 VAL19 GLY20 LYS21 ALA22 ILE23 GLN24 LYS25 VAL26 VAL27 ALA28 ASP29 GLY30 ALA31 GLY32 LEU33 PRO34 GLY35 GLU36 ASP37 TRP38 VAL39 PHE40 VAL41 SER42 SER43 LYS44 ASP45 ALA46 ASP47 LEU48 THR49 ASP50 THR51 ALA52 GLN53 THR54 ARG55 ALA56 LEU57 PHE58 GLU59 LYS60 VAL61 GLN62 PRO63 THR64 HIS65 VAL66 ILE67 HIS68 LEU69 ALA70 ALA71 MET72 VAL73 GLY74 GLY75 LEU76 PHE77 ARG78 ASN79 ILE80 LYS81 TYR82 ASN83 LEU84 ASP85 PHE86 TRP87 ARG88 LYS89 ASN90 VAL91 HIS92 MET93 ASN94 ASP95 ASN96 VAL97 LEU98 HIS99 SER100 ALA101 PHE102 GLU103 VAL104 GLY105 ALA106 ARG107 LYS108 VAL109 VAL110 SER111 CYS112 LEU113 SER114 THR115 CYS116 ILE117 PHE118 PRO119 ASP120 LYS121 THR122 THR123 TYR124 PRO125 ILE126 ASP127 GLU128 THR129 MET130 ILE131 HIS132 ASN133 GLY134 PRO135 PRO136 HIS137 ASN138 SER139 ASN140 PHE141 GLY142 TYR143 SER144 TYR145 ALA146 LYS147 ARG148 MET149 ILE150 ASP151 VAL152 GLN153 ASN154 ARG155 ALA156 TYR157 PHE158 GLN159 GLN160 TYR161 GLY162 CYS163 THR164 PHE165 THR166 ALA167 VAL168 ILE169 PRO170 THR171 ASN172 VAL173 PHE174 GLY175 PRO176 HIS177 ASP178 ASN179 PHE180 ASN181 ILE182 GLU183 ASP184 GLY185 HIS186 VAL187 LEU188 PRO189 GLY190 LEU191 ILE192 HIS193 LYS194 VAL195 HIS196 LEU197 ALA198 LYS199 SER200 SER201 GLY202 SER203 ALA204 LEU205 THR206 VAL207 TRP208 GLY209 THR210 GLY211 ASN212 PRO213 ARG214 ARG215 GLN216 PHE217 ILE218 TYR219 SER220 LEU221 ASP222 LEU223 ALA224 GLN225 LEU226 PHE227 ILE228 TRP229 VAL230 LEU231 ARG232 GLU233 TYR234 ASN235 GLU236 VAL237 GLU238 PRO239 ILE240 ILE241 LEU242 SER243 VAL244 GLY245 GLU246 GLU247 ASP248 GLU249 VAL250 SER251 ILE252 LYS253 GLU254 ALA255 ALA256 GLU257 ALA258 VAL259 VAL260 GLU261 ALA262 MET263 ASP264 PHE265 HIS266 GLY267 GLU268 VAL269 THR270 PHE271 ASP272 THR273 THR274 LYS275 SER276 ASP277 GLY278 GLN279 PHE280 LYS281 LYS282 THR283 ALA284 SER285 ASN286 SER287 LYS288 LEU289 ARG290 THR291 TYR292 LEU293 PRO294 ASP295 PHE296 ARG297 PHE298 THR299 PRO300 PHE301 LYS302 GLN303 ALA304 VAL305 LYS306 GLU307 THR308 CYS309 ALA310 TRP311 PHE312 THR313 ASP314 ASN315 TYR316 GLU317 GLN318 ALA319 ARG320
Ligands
Unit 5 NAP900 GDP901
Unit 6 NAP900 GDP901
Unit 7 NAP900 GDP901
Unit 8 NAP900 GDP901
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany