4B0T - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF THE PUP LIGASE PAFA OF THE PROKARYOTIC UBIQUITIN-LIKE MODIFICATION PATHWAY IN COMPLEX WITH ADP
• Keywords: LIGASE, PUPYLATION, DEPUPYLATION, PROKARYOTIC UBIQUITIN-LIKE PROTEIN, PROTEASOME
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4B0T	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PUP--PROTEIN LIGASE	A	470	3683	0
2	Protein	PUP--PROTEIN LIGASE	B	472	3700	0
3	Ligand	PUP--PROTEIN LIGASE	A	2	0	39
4	Ligand	PUP--PROTEIN LIGASE	B	2	0	40
5	Water			434	0	434
total				1380	7383	513

Proteins

Unit 1

SER 2 THR 3 VAL 4 GLU 5 SER 6 ALA 7 LEU 8 THR 9 ARG 10 ARG 11 ILE 12 MET 13 GLY 14 ILE 15 GLU 16 THR 17 GLU 18 TYR 19 GLY 20 LEU 21 THR 22 PHE 23 VAL 24 ASP 25 ARG 32 PRO 33 ASP 34 GLU 35 ILE 36 ALA 37 ARG 38 ARG 39 MET 40 PHE 41 ARG 42 PRO 43 ILE 44 VAL 45 GLU 46 LYS 47 TYR 48 SER 49 SER 50 SER 51 ASN 52 ILE 53 PHE 54 ILE 55 PRO 56 ASN 57 GLY 58 SER 59 ARG 60 LEU 61 TYR 62 LEU 63 ASP 64 VAL 65 GLY 66 SER 67 HIS 68 PRO 69 GLU 70 TYR 71 ALA 72 THR 73 ALA 74 GLU 75 CYS 76 ASP 77 ASN 78 LEU 79 THR 80 GLN 81 LEU 82 ILE 83 ASN 84 PHE 85 GLU 86 LYS 87 ALA 88 GLY 89 ASP 90 VAL 91 ILE 92 ALA 93 ASP 94 ARG 95 MET 96 ALA 97 VAL 98 ASP 99 ALA 100 GLU 101 GLU 102 SER 103 LEU 104 ALA 105 LYS 106 GLU 107 ASP 108 ILE 109 ALA 110 GLY 111 GLN 112 VAL 113 TYR 114 LEU 115 PHE 116 LYS 117 ASN 118 ASN 119 VAL 120 ASP 121 SER 122 VAL 123 GLY 124 ASN 125 SER 126 TYR 127 GLY 128 CYS 129 HIS 130 GLU 131 ASN 132 TYR 133 LEU 134 VAL 135 GLY 136 ARG 137 SER 138 MET 139 PRO 140 LEU 141 LYS 142 ALA 143 LEU 144 GLY 145 LYS 146 ARG 147 LEU 148 MET 149 PRO 150 PHE 151 LEU 152 ILE 153 THR 154 ARG 155 GLN 156 LEU 157 ILE 158 CYS 159 GLY 160 ALA 161 GLY 162 ARG 163 ILE 164 HIS 165 HIS 166 PRO 167 ASN 168 PRO 169 LEU 170 ASP 171 LYS 172 GLY 173 GLU 174 SER 175 PHE 176 PRO 177 LEU 178 GLY 179 TYR 180 CYS 181 ILE 182 SER 183 GLN 184 ARG 185 SER 186 ASP 187 HIS 188 VAL 189 TRP 190 GLU 191 GLY 192 VAL 193 SER 194 SER 195 ALA 196 THR 197 THR 198 ARG 199 SER 200 ARG 201 PRO 202 ILE 203 ILE 204 ASN 205 THR 206 ARG 207 ASP 208 GLU 209 PRO 210 HIS 211 ALA 212 ASP 213 SER 214 HIS 215 SER 216 TYR 217 ARG 218 ARG 219 LEU 220 HIS 221 VAL 222 ILE 223 VAL 224 GLY 225 ASP 226 ALA 227 ASN 228 MET 229 ALA 230 GLU 231 PRO 232 SER 233 ILE 234 ALA 235 LEU 236 LYS 237 VAL 238 GLY 239 SER 240 THR 241 LEU 242 LEU 243 VAL 244 LEU 245 GLU 246 MET 247 ILE 248 GLU 249 ALA 250 ASP 251 PHE 252 GLY 253 LEU 254 PRO 255 SER 256 LEU 257 GLU 258 LEU 259 ALA 260 ASN 261 ASP 262 ILE 263 ALA 264 SER 265 ILE 266 ARG 267 GLU 268 ILE 269 SER 270 ARG 271 ASP 272 ALA 273 THR 274 GLY 275 SER 276 THR 277 LEU 278 LEU 279 SER 280 LEU 281 LYS 282 ASP 283 GLY 284 THR 285 THR 286 MET 287 THR 288 ALA 289 LEU 290 GLN 291 ILE 292 GLN 293 GLN 294 VAL 295 VAL 296 PHE 297 GLU 298 HIS 299 ALA 300 SER 301 LYS 302 TRP 303 LEU 304 GLU 305 GLN 306 ARG 307 PRO 308 GLU 309 PRO 310 GLU 311 PHE 312 SER 313 GLY 314 THR 315 SER 316 ASN 317 THR 318 GLU 319 MET 320 ALA 321 ARG 322 VAL 323 LEU 324 ASP 325 LEU 326 TRP 327 GLY 328 ARG 329 MET 330 LEU 331 LYS 332 ALA 333 ILE 334 GLU 335 SER 336 GLY 337 ASP 338 PHE 339 SER 340 GLU 341 VAL 342 ASP 343 THR 344 GLU 345 ILE 346 ASP 347 TRP 348 VAL 349 ILE 350 LYS 351 LYS 352 LYS 353 LEU 354 ILE 355 ASP 356 ARG 357 PHE 358 ILE 359 GLN 360 ARG 361 GLY 362 ASN 363 LEU 364 GLY 365 LEU 366 ASP 367 ASP 368 PRO 369 LYS 370 LEU 371 ALA 372 GLN 373 VAL 374 ASP 375 LEU 376 THR 377 TYR 378 HIS 379 ASP 380 ILE 381 ARG 382 PRO 383 GLY 384 ARG 385 GLY 386 LEU 387 PHE 388 SER 389 VAL 390 LEU 391 GLN 392 SER 393 ARG 394 GLY 395 MET 396 ILE 397 LYS 398 ARG 399 TRP 400 THR 401 THR 402 ASP 403 GLU 404 ALA 405 ILE 406 LEU 407 ALA 408 ALA 409 VAL 410 ASP 411 THR 412 ALA 413 PRO 414 ASP 415 THR 416 THR 417 ARG 418 ALA 419 HIS 420 LEU 421 ARG 422 GLY 423 ARG 424 ILE 425 LEU 426 LYS 427 ALA 428 ALA 429 ASP 430 THR 431 LEU 432 GLY 433 VAL 434 PRO 435 VAL 436 THR 437 VAL 438 ASP 439 TRP 440 MET 441 ARG 442 HIS 443 LYS 444 VAL 445 ASN 446 ARG 447 PRO 448 GLU 449 PRO 450 GLN 451 SER 452 VAL 453 GLU 454 LEU 455 GLY 456 ASP 457 PRO 458 PHE 459 SER 460 ALA 461 VAL 462 ASN 463 SER 464 GLU 465 VAL 466 ASP 467 GLN 468 LEU 469 ILE 470 GLU 471 TYR 472 MET 473 THR 474 VAL 475 HIS 476 ALA 477

Unit 2

SER 2 THR 3 VAL 4 GLU 5 SER 6 ALA 7 LEU 8 THR 9 ARG 10 ARG 11 ILE 12 MET 13 GLY 14 ILE 15 GLU 16 THR 17 GLU 18 TYR 19 GLY 20 LEU 21 THR 22 PHE 23 VAL 24 ASP 25 LEU 31 ARG 32 PRO 33 ASP 34 GLU 35 ILE 36 ALA 37 ARG 38 ARG 39 MET 40 PHE 41 ARG 42 PRO 43 ILE 44 VAL 45 GLU 46 LYS 47 TYR 48 SER 49 SER 50 SER 51 ASN 52 ILE 53 PHE 54 ILE 55 PRO 56 ASN 57 GLY 58 SER 59 ARG 60 LEU 61 TYR 62 LEU 63 ASP 64 VAL 65 GLY 66 SER 67 HIS 68 PRO 69 GLU 70 TYR 71 ALA 72 THR 73 ALA 74 GLU 75 CYS 76 ASP 77 ASN 78 LEU 79 THR 80 GLN 81 LEU 82 ILE 83 ASN 84 PHE 85 GLU 86 LYS 87 ALA 88 GLY 89 ASP 90 VAL 91 ILE 92 ALA 93 ASP 94 ARG 95 MET 96 ALA 97 VAL 98 ASP 99 ALA 100 GLU 101 GLU 102 SER 103 LEU 104 ALA 105 LYS 106 GLU 107 ASP 108 ILE 109 ALA 110 GLY 111 GLN 112 VAL 113 TYR 114 LEU 115 PHE 116 LYS 117 ASN 118 ASN 119 VAL 120 ASP 121 SER 122 VAL 123 GLY 124 ASN 125 SER 126 TYR 127 GLY 128 CYS 129 HIS 130 GLU 131 ASN 132 TYR 133 LEU 134 VAL 135 GLY 136 ARG 137 SER 138 MET 139 PRO 140 LEU 141 LYS 142 ALA 143 LEU 144 GLY 145 LYS 146 ARG 147 LEU 148 MET 149 PRO 150 PHE 151 LEU 152 ILE 153 THR 154 ARG 155 GLN 156 LEU 157 ILE 158 CYS 159 GLY 160 ALA 161 GLY 162 ARG 163 ILE 164 HIS 165 HIS 166 PRO 167 ASN 168 PRO 169 LEU 170 ASP 171 LYS 172 GLY 173 GLU 174 SER 175 PHE 176 PRO 177 LEU 178 GLY 179 TYR 180 CYS 181 ILE 182 SER 183 GLN 184 ARG 185 SER 186 ASP 187 HIS 188 VAL 189 TRP 190 GLU 191 GLY 192 VAL 193 SER 194 SER 195 ALA 196 THR 197 THR 198 ARG 199 SER 200 ARG 201 PRO 202 ILE 203 ILE 204 ASN 205 THR 206 ARG 207 ASP 208 GLU 209 PRO 210 HIS 211 ALA 212 ASP 213 SER 214 HIS 215 SER 216 TYR 217 ARG 218 ARG 219 LEU 220 HIS 221 VAL 222 ILE 223 VAL 224 GLY 225 ASP 226 ALA 227 ASN 228 MET 229 ALA 230 GLU 231 PRO 232 SER 233 ILE 234 ALA 235 LEU 236 LYS 237 VAL 238 GLY 239 SER 240 THR 241 LEU 242 LEU 243 VAL 244 LEU 245 GLU 246 MET 247 ILE 248 GLU 249 ALA 250 ASP 251 PHE 252 GLY 253 LEU 254 PRO 255 SER 256 LEU 257 GLU 258 LEU 259 ALA 260 ASN 261 ASP 262 ILE 263 ALA 264 SER 265 ILE 266 ARG 267 GLU 268 ILE 269 SER 270 ARG 271 ASP 272 ALA 273 THR 274 GLY 275 SER 276 THR 277 LEU 278 LEU 279 SER 280 LEU 281 LYS 282 ASP 283 GLY 284 THR 285 THR 286 MET 287 THR 288 ALA 289 LEU 290 GLN 291 ILE 292 GLN 293 GLN 294 VAL 295 VAL 296 PHE 297 GLU 298 HIS 299 ALA 300 SER 301 LYS 302 TRP 303 LEU 304 GLU 305 GLN 306 ARG 307 PRO 308 GLU 309 PRO 310 GLU 311 PHE 312 SER 313 GLY 314 THR 315 SER 316 ASN 317 THR 318 GLU 319 MET 320 ALA 321 ARG 322 VAL 323 LEU 324 ASP 325 LEU 326 TRP 327 GLY 328 ARG 329 MET 330 LEU 331 LYS 332 ALA 333 ILE 334 GLU 335 SER 336 GLY 337 ASP 338 PHE 339 SER 340 GLU 341 VAL 342 ASP 343 THR 344 GLU 345 ILE 346 ASP 347 TRP 348 VAL 349 ILE 350 LYS 351 LYS 352 LYS 353 LEU 354 ILE 355 ASP 356 ARG 357 PHE 358 ILE 359 GLN 360 ARG 361 GLY 362 ASN 363 LEU 364 GLY 365 LEU 366 ASP 367 ASP 368 PRO 369 LYS 370 LEU 371 ALA 372 GLN 373 VAL 374 ASP 375 LEU 376 THR 377 TYR 378 HIS 379 ASP 380 ILE 381 ARG 382 PRO 383 GLY 384 ARG 385 GLY 386 LEU 387 PHE 388 SER 389 VAL 390 LEU 391 GLN 392 SER 393 ARG 394 GLY 395 MET 396 ILE 397 LYS 398 ARG 399 TRP 400 THR 401 THR 402 ASP 403 GLU 404 ALA 405 ILE 406 LEU 407 ALA 408 ALA 409 VAL 410 ASP 411 THR 412 ALA 413 PRO 414 ASP 415 THR 416 THR 417 ARG 418 ALA 419 HIS 420 LEU 421 ARG 422 GLY 423 ARG 424 ILE 425 LEU 426 LYS 427 ALA 428 ALA 429 ASP 430 THR 431 LEU 432 GLY 433 VAL 434 PRO 435 VAL 436 THR 437 VAL 438 ASP 439 TRP 440 MET 441 ARG 442 HIS 443 LYS 444 VAL 445 ASN 446 ARG 447 PRO 448 GLU 449 PRO 450 GLN 451 SER 452 VAL 453 GLU 454 LEU 455 GLY 456 ASP 457 PRO 458 PHE 459 SER 460 ALA 461 VAL 462 ASN 463 SER 464 GLU 465 VAL 466 ASP 467 GLN 468 LEU 469 ILE 470 GLU 471 TYR 472 MET 473 THR 474 VAL 475 HIS 476 ALA 477 GLU 478

Ligands

Unit 3	ADP 1478 MG 1479
Unit 4	ADP 1479 MG 1480