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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS FUMARASE ( RV1098C) S318C IN COMPLEX WITH FUMARATE
Keywords HYDROLASE, METABOLISM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4APB     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   FUMARATE HYDRATASE CLASS II  A 460 3369 0
2  Protein   FUMARATE HYDRATASE CLASS II  B 460 3359 0
3  Protein   FUMARATE HYDRATASE CLASS II  C 460 3375 0
4  Protein   FUMARATE HYDRATASE CLASS II  D 462 3383 0
5  Ligand   FUMARATE HYDRATASE CLASS II  A 2 0 9
6  Ligand   FUMARATE HYDRATASE CLASS II  B 2 0 9
7  Ligand   FUMARATE HYDRATASE CLASS II  C 1 0 8
8  Ligand   FUMARATE HYDRATASE CLASS II  D 2 0 9
9 Water     1661 0 1661
total       3510 13486 1696
Proteins
Unit 1 ASN9 TYR10 ARG11 ILE12 GLU13 HIS14 ASP15 THR16 MET17 GLY18 GLU19 VAL20 ARG21 VAL22 PRO23 ALA24 LYS25 ALA26 LEU27 TRP28 ARG29 ALA30 GLN31 THR32 GLN33 ARG34 ALA35 VAL36 GLU37 ASN38 PHE39 PRO40 ILE41 SER42 GLY43 ARG44 GLY45 LEU46 GLU47 ARG48 THR49 GLN50 ILE51 ARG52 ALA53 LEU54 GLY55 LEU56 LEU57 LYS58 GLY59 ALA60 CYS61 ALA62 GLN63 VAL64 ASN65 SER66 ASP67 LEU68 GLY69 LEU70 LEU71 ALA72 PRO73 GLU74 LYS75 ALA76 ASP77 ALA78 ILE79 ILE80 ALA81 ALA82 ALA83 ALA84 GLU85 ILE86 ALA87 ASP88 GLY89 GLN90 HIS91 ASP92 ASP93 GLN94 PHE95 PRO96 ILE97 ASP98 VAL99 PHE100 GLN101 THR102 GLY103 SER104 GLY105 THR106 SER107 SER108 ASN109 MET110 ASN111 THR112 ASN113 GLU114 VAL115 ILE116 ALA117 SER118 ILE119 ALA120 ALA121 LYS122 GLY123 GLY124 VAL125 THR126 LEU127 HIS128 PRO129 ASN130 ASP131 ASP132 VAL133 ASN134 MET135 SER136 GLN137 SER138 SER139 ASN140 ASP141 THR142 PHE143 PRO144 THR145 ALA146 THR147 HIS148 ILE149 ALA150 ALA151 THR152 GLU153 ALA154 ALA155 VAL156 ALA157 HIS158 LEU159 ILE160 PRO161 ALA162 LEU163 GLN164 GLN165 LEU166 HIS167 ASP168 ALA169 LEU170 ALA171 ALA172 LYS173 ALA174 LEU175 ASP176 TRP177 HIS178 THR179 VAL180 VAL181 LYS182 SER183 GLY184 ARG185 THR186 HIS187 LEU188 MET189 ASP190 ALA191 VAL192 PRO193 VAL194 THR195 LEU196 GLY197 GLN198 GLU199 PHE200 SER201 GLY202 TYR203 ALA204 ARG205 GLN206 ILE207 GLU208 ALA209 GLY210 ILE211 GLU212 ARG213 VAL214 ARG215 ALA216 CYS217 LEU218 PRO219 ARG220 LEU221 GLY222 GLU223 LEU224 ALA225 ILE226 GLY227 GLY228 THR229 ALA230 VAL231 GLY232 THR233 GLY234 LEU235 ASN236 ALA237 PRO238 ASP239 ASP240 PHE241 GLY242 VAL243 ARG244 VAL245 VAL246 ALA247 VAL248 LEU249 VAL250 ALA251 GLN252 THR253 GLY254 LEU255 SER256 GLU257 LEU258 ARG259 THR260 ALA261 ALA262 ASN263 SER264 PHE265 GLU266 ALA267 GLN268 ALA269 ALA270 ARG271 ASP272 GLY273 LEU274 VAL275 GLU276 ALA277 SER278 GLY279 ALA280 LEU281 ARG282 THR283 ILE284 ALA285 VAL286 SER287 LEU288 THR289 LYS290 ILE291 ALA292 ASN293 ASP294 ILE295 ARG296 TRP297 MET298 GLY299 SER300 GLY301 PRO302 LEU303 THR304 GLY305 LEU306 ALA307 GLU308 ILE309 GLN310 LEU311 PRO312 ASP313 LEU314 GLN315 PRO316 GLY317 CYS318 SER319 ILE320 MET321 PRO322 GLY323 LYS324 VAL325 ASN326 PRO327 VAL328 LEU329 PRO330 GLU331 ALA332 VAL333 THR334 GLN335 VAL336 ALA337 ALA338 GLN339 VAL340 ILE341 GLY342 ASN343 ASP344 ALA345 ALA346 ILE347 ALA348 TRP349 GLY350 GLY351 ALA352 ASN353 GLY354 ALA355 PHE356 GLU357 LEU358 ASN359 VAL360 TYR361 ILE362 PRO363 MET364 MET365 ALA366 ARG367 ASN368 ILE369 LEU370 GLU371 SER372 PHE373 LYS374 LEU375 LEU376 THR377 ASN378 VAL379 SER380 ARG381 LEU382 PHE383 ALA384 GLN385 ARG386 CYS387 ILE388 ALA389 GLY390 LEU391 THR392 ALA393 ASN394 VAL395 GLU396 HIS397 LEU398 ARG399 ARG400 LEU401 ALA402 GLU403 SER404 SER405 PRO406 SER407 ILE408 VAL409 THR410 PRO411 LEU412 ASN413 SER414 ALA415 ILE416 GLY417 TYR418 GLU419 GLU420 ALA421 ALA422 ALA423 VAL424 ALA425 LYS426 GLN427 ALA428 LEU429 LYS430 GLU431 ARG432 LYS433 THR434 ILE435 ARG436 GLN437 THR438 VAL439 ILE440 ASP441 ARG442 GLY443 LEU444 ILE445 GLY446 ASP447 ARG448 LEU449 SER450 ILE451 GLU452 ASP453 LEU454 ASP455 ARG456 ARG457 LEU458 ASP459 VAL460 LEU461 ALA462 MET463 ALA464 LYS465 ALA466 GLU467 GLN468
Unit 2 ASN9 TYR10 ARG11 ILE12 GLU13 HIS14 ASP15 THR16 MET17 GLY18 GLU19 VAL20 ARG21 VAL22 PRO23 ALA24 LYS25 ALA26 LEU27 TRP28 ARG29 ALA30 GLN31 THR32 GLN33 ARG34 ALA35 VAL36 GLU37 ASN38 PHE39 PRO40 ILE41 SER42 GLY43 ARG44 GLY45 LEU46 GLU47 ARG48 THR49 GLN50 ILE51 ARG52 ALA53 LEU54 GLY55 LEU56 LEU57 LYS58 GLY59 ALA60 CYS61 ALA62 GLN63 VAL64 ASN65 SER66 ASP67 LEU68 GLY69 LEU70 LEU71 ALA72 PRO73 GLU74 LYS75 ALA76 ASP77 ALA78 ILE79 ILE80 ALA81 ALA82 ALA83 ALA84 GLU85 ILE86 ALA87 ASP88 GLY89 GLN90 HIS91 ASP92 ASP93 GLN94 PHE95 PRO96 ILE97 ASP98 VAL99 PHE100 GLN101 THR102 GLY103 SER104 GLY105 THR106 SER107 SER108 ASN109 MET110 ASN111 THR112 ASN113 GLU114 VAL115 ILE116 ALA117 SER118 ILE119 ALA120 ALA121 LYS122 GLY123 GLY124 VAL125 THR126 LEU127 HIS128 PRO129 ASN130 ASP131 ASP132 VAL133 ASN134 MET135 SER136 GLN137 SER138 SER139 ASN140 ASP141 THR142 PHE143 PRO144 THR145 ALA146 THR147 HIS148 ILE149 ALA150 ALA151 THR152 GLU153 ALA154 ALA155 VAL156 ALA157 HIS158 LEU159 ILE160 PRO161 ALA162 LEU163 GLN164 GLN165 LEU166 HIS167 ASP168 ALA169 LEU170 ALA171 ALA172 LYS173 ALA174 LEU175 ASP176 TRP177 HIS178 THR179 VAL180 VAL181 LYS182 SER183 GLY184 ARG185 THR186 HIS187 LEU188 MET189 ASP190 ALA191 VAL192 PRO193 VAL194 THR195 LEU196 GLY197 GLN198 GLU199 PHE200 SER201 GLY202 TYR203 ALA204 ARG205 GLN206 ILE207 GLU208 ALA209 GLY210 ILE211 GLU212 ARG213 VAL214 ARG215 ALA216 CYS217 LEU218 PRO219 ARG220 LEU221 GLY222 GLU223 LEU224 ALA225 ILE226 GLY227 GLY228 THR229 ALA230 VAL231 GLY232 THR233 GLY234 LEU235 ASN236 ALA237 PRO238 ASP239 ASP240 PHE241 GLY242 VAL243 ARG244 VAL245 VAL246 ALA247 VAL248 LEU249 VAL250 ALA251 GLN252 THR253 GLY254 LEU255 SER256 GLU257 LEU258 ARG259 THR260 ALA261 ALA262 ASN263 SER264 PHE265 GLU266 ALA267 GLN268 ALA269 ALA270 ARG271 ASP272 GLY273 LEU274 VAL275 GLU276 ALA277 SER278 GLY279 ALA280 LEU281 ARG282 THR283 ILE284 ALA285 VAL286 SER287 LEU288 THR289 LYS290 ILE291 ALA292 ASN293 ASP294 ILE295 ARG296 TRP297 MET298 GLY299 SER300 GLY301 PRO302 LEU303 THR304 GLY305 LEU306 ALA307 GLU308 ILE309 GLN310 LEU311 PRO312 ASP313 LEU314 GLN315 PRO316 GLY317 CYS318 SER319 ILE320 MET321 PRO322 GLY323 LYS324 VAL325 ASN326 PRO327 VAL328 LEU329 PRO330 GLU331 ALA332 VAL333 THR334 GLN335 VAL336 ALA337 ALA338 GLN339 VAL340 ILE341 GLY342 ASN343 ASP344 ALA345 ALA346 ILE347 ALA348 TRP349 GLY350 GLY351 ALA352 ASN353 GLY354 ALA355 PHE356 GLU357 LEU358 ASN359 VAL360 TYR361 ILE362 PRO363 MET364 MET365 ALA366 ARG367 ASN368 ILE369 LEU370 GLU371 SER372 PHE373 LYS374 LEU375 LEU376 THR377 ASN378 VAL379 SER380 ARG381 LEU382 PHE383 ALA384 GLN385 ARG386 CYS387 ILE388 ALA389 GLY390 LEU391 THR392 ALA393 ASN394 VAL395 GLU396 HIS397 LEU398 ARG399 ARG400 LEU401 ALA402 GLU403 SER404 SER405 PRO406 SER407 ILE408 VAL409 THR410 PRO411 LEU412 ASN413 SER414 ALA415 ILE416 GLY417 TYR418 GLU419 GLU420 ALA421 ALA422 ALA423 VAL424 ALA425 LYS426 GLN427 ALA428 LEU429 LYS430 GLU431 ARG432 LYS433 THR434 ILE435 ARG436 GLN437 THR438 VAL439 ILE440 ASP441 ARG442 GLY443 LEU444 ILE445 GLY446 ASP447 ARG448 LEU449 SER450 ILE451 GLU452 ASP453 LEU454 ASP455 ARG456 ARG457 LEU458 ASP459 VAL460 LEU461 ALA462 MET463 ALA464 LYS465 ALA466 GLU467 GLN468
Unit 3 ASN9 TYR10 ARG11 ILE12 GLU13 HIS14 ASP15 THR16 MET17 GLY18 GLU19 VAL20 ARG21 VAL22 PRO23 ALA24 LYS25 ALA26 LEU27 TRP28 ARG29 ALA30 GLN31 THR32 GLN33 ARG34 ALA35 VAL36 GLU37 ASN38 PHE39 PRO40 ILE41 SER42 GLY43 ARG44 GLY45 LEU46 GLU47 ARG48 THR49 GLN50 ILE51 ARG52 ALA53 LEU54 GLY55 LEU56 LEU57 LYS58 GLY59 ALA60 CYS61 ALA62 GLN63 VAL64 ASN65 SER66 ASP67 LEU68 GLY69 LEU70 LEU71 ALA72 PRO73 GLU74 LYS75 ALA76 ASP77 ALA78 ILE79 ILE80 ALA81 ALA82 ALA83 ALA84 GLU85 ILE86 ALA87 ASP88 GLY89 GLN90 HIS91 ASP92 ASP93 GLN94 PHE95 PRO96 ILE97 ASP98 VAL99 PHE100 GLN101 THR102 GLY103 SER104 GLY105 THR106 SER107 SER108 ASN109 MET110 ASN111 THR112 ASN113 GLU114 VAL115 ILE116 ALA117 SER118 ILE119 ALA120 ALA121 LYS122 GLY123 GLY124 VAL125 THR126 LEU127 HIS128 PRO129 ASN130 ASP131 ASP132 VAL133 ASN134 MET135 SER136 GLN137 SER138 SER139 ASN140 ASP141 THR142 PHE143 PRO144 THR145 ALA146 THR147 HIS148 ILE149 ALA150 ALA151 THR152 GLU153 ALA154 ALA155 VAL156 ALA157 HIS158 LEU159 ILE160 PRO161 ALA162 LEU163 GLN164 GLN165 LEU166 HIS167 ASP168 ALA169 LEU170 ALA171 ALA172 LYS173 ALA174 LEU175 ASP176 TRP177 HIS178 THR179 VAL180 VAL181 LYS182 SER183 GLY184 ARG185 THR186 HIS187 LEU188 MET189 ASP190 ALA191 VAL192 PRO193 VAL194 THR195 LEU196 GLY197 GLN198 GLU199 PHE200 SER201 GLY202 TYR203 ALA204 ARG205 GLN206 ILE207 GLU208 ALA209 GLY210 ILE211 GLU212 ARG213 VAL214 ARG215 ALA216 CYS217 LEU218 PRO219 ARG220 LEU221 GLY222 GLU223 LEU224 ALA225 ILE226 GLY227 GLY228 THR229 ALA230 VAL231 GLY232 THR233 GLY234 LEU235 ASN236 ALA237 PRO238 ASP239 ASP240 PHE241 GLY242 VAL243 ARG244 VAL245 VAL246 ALA247 VAL248 LEU249 VAL250 ALA251 GLN252 THR253 GLY254 LEU255 SER256 GLU257 LEU258 ARG259 THR260 ALA261 ALA262 ASN263 SER264 PHE265 GLU266 ALA267 GLN268 ALA269 ALA270 ARG271 ASP272 GLY273 LEU274 VAL275 GLU276 ALA277 SER278 GLY279 ALA280 LEU281 ARG282 THR283 ILE284 ALA285 VAL286 SER287 LEU288 THR289 LYS290 ILE291 ALA292 ASN293 ASP294 ILE295 ARG296 TRP297 MET298 GLY299 SER300 GLY301 PRO302 LEU303 THR304 GLY305 LEU306 ALA307 GLU308 ILE309 GLN310 LEU311 PRO312 ASP313 LEU314 GLN315 PRO316 GLY317 CYS318 SER319 ILE320 MET321 PRO322 GLY323 LYS324 VAL325 ASN326 PRO327 VAL328 LEU329 PRO330 GLU331 ALA332 VAL333 THR334 GLN335 VAL336 ALA337 ALA338 GLN339 VAL340 ILE341 GLY342 ASN343 ASP344 ALA345 ALA346 ILE347 ALA348 TRP349 GLY350 GLY351 ALA352 ASN353 GLY354 ALA355 PHE356 GLU357 LEU358 ASN359 VAL360 TYR361 ILE362 PRO363 MET364 MET365 ALA366 ARG367 ASN368 ILE369 LEU370 GLU371 SER372 PHE373 LYS374 LEU375 LEU376 THR377 ASN378 VAL379 SER380 ARG381 LEU382 PHE383 ALA384 GLN385 ARG386 CYS387 ILE388 ALA389 GLY390 LEU391 THR392 ALA393 ASN394 VAL395 GLU396 HIS397 LEU398 ARG399 ARG400 LEU401 ALA402 GLU403 SER404 SER405 PRO406 SER407 ILE408 VAL409 THR410 PRO411 LEU412 ASN413 SER414 ALA415 ILE416 GLY417 TYR418 GLU419 GLU420 ALA421 ALA422 ALA423 VAL424 ALA425 LYS426 GLN427 ALA428 LEU429 LYS430 GLU431 ARG432 LYS433 THR434 ILE435 ARG436 GLN437 THR438 VAL439 ILE440 ASP441 ARG442 GLY443 LEU444 ILE445 GLY446 ASP447 ARG448 LEU449 SER450 ILE451 GLU452 ASP453 LEU454 ASP455 ARG456 ARG457 LEU458 ASP459 VAL460 LEU461 ALA462 MET463 ALA464 LYS465 ALA466 GLU467 GLN468
Unit 4 ASN9 TYR10 ARG11 ILE12 GLU13 HIS14 ASP15 THR16 MET17 GLY18 GLU19 VAL20 ARG21 VAL22 PRO23 ALA24 LYS25 ALA26 LEU27 TRP28 ARG29 ALA30 GLN31 THR32 GLN33 ARG34 ALA35 VAL36 GLU37 ASN38 PHE39 PRO40 ILE41 SER42 GLY43 ARG44 GLY45 LEU46 GLU47 ARG48 THR49 GLN50 ILE51 ARG52 ALA53 LEU54 GLY55 LEU56 LEU57 LYS58 GLY59 ALA60 CYS61 ALA62 GLN63 VAL64 ASN65 SER66 ASP67 LEU68 GLY69 LEU70 LEU71 ALA72 PRO73 GLU74 LYS75 ALA76 ASP77 ALA78 ILE79 ILE80 ALA81 ALA82 ALA83 ALA84 GLU85 ILE86 ALA87 ASP88 GLY89 GLN90 HIS91 ASP92 ASP93 GLN94 PHE95 PRO96 ILE97 ASP98 VAL99 PHE100 GLN101 THR102 GLY103 SER104 GLY105 THR106 SER107 SER108 ASN109 MET110 ASN111 THR112 ASN113 GLU114 VAL115 ILE116 ALA117 SER118 ILE119 ALA120 ALA121 LYS122 GLY123 GLY124 VAL125 THR126 LEU127 HIS128 PRO129 ASN130 ASP131 ASP132 VAL133 ASN134 MET135 SER136 GLN137 SER138 SER139 ASN140 ASP141 THR142 PHE143 PRO144 THR145 ALA146 THR147 HIS148 ILE149 ALA150 ALA151 THR152 GLU153 ALA154 ALA155 VAL156 ALA157 HIS158 LEU159 ILE160 PRO161 ALA162 LEU163 GLN164 GLN165 LEU166 HIS167 ASP168 ALA169 LEU170 ALA171 ALA172 LYS173 ALA174 LEU175 ASP176 TRP177 HIS178 THR179 VAL180 VAL181 LYS182 SER183 GLY184 ARG185 THR186 HIS187 LEU188 MET189 ASP190 ALA191 VAL192 PRO193 VAL194 THR195 LEU196 GLY197 GLN198 GLU199 PHE200 SER201 GLY202 TYR203 ALA204 ARG205 GLN206 ILE207 GLU208 ALA209 GLY210 ILE211 GLU212 ARG213 VAL214 ARG215 ALA216 CYS217 LEU218 PRO219 ARG220 LEU221 GLY222 GLU223 LEU224 ALA225 ILE226 GLY227 GLY228 THR229 ALA230 VAL231 GLY232 THR233 GLY234 LEU235 ASN236 ALA237 PRO238 ASP239 ASP240 PHE241 GLY242 VAL243 ARG244 VAL245 VAL246 ALA247 VAL248 LEU249 VAL250 ALA251 GLN252 THR253 GLY254 LEU255 SER256 GLU257 LEU258 ARG259 THR260 ALA261 ALA262 ASN263 SER264 PHE265 GLU266 ALA267 GLN268 ALA269 ALA270 ARG271 ASP272 GLY273 LEU274 VAL275 GLU276 ALA277 SER278 GLY279 ALA280 LEU281 ARG282 THR283 ILE284 ALA285 VAL286 SER287 LEU288 THR289 LYS290 ILE291 ALA292 ASN293 ASP294 ILE295 ARG296 TRP297 MET298 GLY299 SER300 GLY301 PRO302 LEU303 THR304 GLY305 LEU306 ALA307 GLU308 ILE309 GLN310 LEU311 PRO312 ASP313 LEU314 GLN315 PRO316 GLY317 CYS318 SER319 ILE320 MET321 PRO322 GLY323 LYS324 VAL325 ASN326 PRO327 VAL328 LEU329 PRO330 GLU331 ALA332 VAL333 THR334 GLN335 VAL336 ALA337 ALA338 GLN339 VAL340 ILE341 GLY342 ASN343 ASP344 ALA345 ALA346 ILE347 ALA348 TRP349 GLY350 GLY351 ALA352 ASN353 GLY354 ALA355 PHE356 GLU357 LEU358 ASN359 VAL360 TYR361 ILE362 PRO363 MET364 MET365 ALA366 ARG367 ASN368 ILE369 LEU370 GLU371 SER372 PHE373 LYS374 LEU375 LEU376 THR377 ASN378 VAL379 SER380 ARG381 LEU382 PHE383 ALA384 GLN385 ARG386 CYS387 ILE388 ALA389 GLY390 LEU391 THR392 ALA393 ASN394 VAL395 GLU396 HIS397 LEU398 ARG399 ARG400 LEU401 ALA402 GLU403 SER404 SER405 PRO406 SER407 ILE408 VAL409 THR410 PRO411 LEU412 ASN413 SER414 ALA415 ILE416 GLY417 TYR418 GLU419 GLU420 ALA421 ALA422 ALA423 VAL424 ALA425 LYS426 GLN427 ALA428 LEU429 LYS430 GLU431 ARG432 LYS433 THR434 ILE435 ARG436 GLN437 THR438 VAL439 ILE440 ASP441 ARG442 GLY443 LEU444 ILE445 GLY446 ASP447 ARG448 LEU449 SER450 ILE451 GLU452 ASP453 LEU454 ASP455 ARG456 ARG457 LEU458 ASP459 VAL460 LEU461 ALA462 MET463 ALA464 LYS465 ALA466 GLU467 GLN468 LEU469 ASP470
Ligands
Unit 5 FUM1469 CA1470
Unit 6 FUM1469 CA1470
Unit 7 FUM1469
Unit 8 FUM1471 CA1472
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany