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Sequence, Chains, Asymmetric and Biological Units

Title THE LIN28B COLD SHOCK DOMAIN IN COMPLEX WITH HEXAURIDINE
Keywords CHAPERONE-RNA COMPLEX, TRANSCRIPTION, LIN-28, RNA, LET-7, MI
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4ALP     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   LIN28 ISOFORM B  A 87 678 0
2  Protein   LIN28 ISOFORM B  B 86 672 0
3  Protein   LIN28 ISOFORM B  C 86 672 0
4  Protein   LIN28 ISOFORM B  D 84 654 0
5  RNA    E 6 115 0
6  Ligand   LIN28 ISOFORM B  B 1 0 6
7  Ligand   LIN28 ISOFORM B  D 1 0 6
8 Water     656 0 656
total       1007 2791 668

Proteins
Unit 1 ASP27 PRO28 GLN29 VAL30 LEU31 ARG32 GLY33 SER34 GLY35 HIS36 CYS37 LYS38 TRP39 PHE40 ASN41 VAL42 ARG43 MET44 GLY45 PHE46 GLY47 PHE48 ILE49 SER50 MET51 THR52 SER53 ARG54 GLU55 GLY56 SER57 PRO58 LEU59 GLU60 ASN61 PRO62 VAL63 ASP64 VAL65 PHE66 VAL67 HIS68 GLN69 SER70 LYS71 LEU72 TYR73 MET74 GLU75 GLY76 PHE77 ARG78 SER79 LEU80 LYS81 GLU82 GLY83 GLU84 PRO85 VAL86 GLU87 PHE88 THR89 PHE90 LYS91 LYS92 SER93 SER94 LYS95 GLY96 PHE97 GLU98 SER99 LEU100 ARG101 VAL102 THR103 GLY104 PRO105 GLY106 GLY107 ASN108 PRO109 CYS110 LEU111 GLY112 ASN113
Unit 2 GLN29 VAL30 LEU31 ARG32 GLY33 SER34 GLY35 HIS36 CYS37 LYS38 TRP39 PHE40 ASN41 VAL42 ARG43 MET44 GLY45 PHE46 GLY47 PHE48 ILE49 SER50 MET51 THR52 SER53 ARG54 GLU55 GLY56 SER57 PRO58 LEU59 GLU60 ASN61 PRO62 VAL63 ASP64 VAL65 PHE66 VAL67 HIS68 GLN69 SER70 LYS71 LEU72 TYR73 MET74 GLU75 GLY76 PHE77 ARG78 SER79 LEU80 LYS81 GLU82 GLY83 GLU84 PRO85 VAL86 GLU87 PHE88 THR89 PHE90 LYS91 LYS92 SER93 SER94 LYS95 GLY96 PHE97 GLU98 SER99 LEU100 ARG101 VAL102 THR103 GLY104 PRO105 GLY106 GLY107 ASN108 PRO109 CYS110 LEU111 GLY112 ASN113 GLU114
Unit 3 GLN29 VAL30 LEU31 ARG32 GLY33 SER34 GLY35 HIS36 CYS37 LYS38 TRP39 PHE40 ASN41 VAL42 ARG43 MET44 GLY45 PHE46 GLY47 PHE48 ILE49 SER50 MET51 THR52 SER53 ARG54 GLU55 GLY56 SER57 PRO58 LEU59 GLU60 ASN61 PRO62 VAL63 ASP64 VAL65 PHE66 VAL67 HIS68 GLN69 SER70 LYS71 LEU72 TYR73 MET74 GLU75 GLY76 PHE77 ARG78 SER79 LEU80 LYS81 GLU82 GLY83 GLU84 PRO85 VAL86 GLU87 PHE88 THR89 PHE90 LYS91 LYS92 SER93 SER94 LYS95 GLY96 PHE97 GLU98 SER99 LEU100 ARG101 VAL102 THR103 GLY104 PRO105 GLY106 GLY107 ASN108 PRO109 CYS110 LEU111 GLY112 ASN113 GLU114
Unit 4 VAL30 LEU31 ARG32 GLY33 SER34 GLY35 HIS36 CYS37 LYS38 TRP39 PHE40 ASN41 VAL42 ARG43 MET44 GLY45 PHE46 GLY47 PHE48 ILE49 SER50 MET51 THR52 SER53 ARG54 GLU55 GLY56 SER57 PRO58 LEU59 GLU60 ASN61 PRO62 VAL63 ASP64 VAL65 PHE66 VAL67 HIS68 GLN69 SER70 LYS71 LEU72 TYR73 MET74 GLU75 GLY76 PHE77 ARG78 SER79 LEU80 LYS81 GLU82 GLY83 GLU84 PRO85 VAL86 GLU87 PHE88 THR89 PHE90 LYS91 LYS92 SER93 SER94 LYS95 GLY96 PHE97 GLU98 SER99 LEU100 ARG101 VAL102 THR103 GLY104 PRO105 GLY106 GLY107 ASN108 PRO109 CYS110 LEU111 GLY112 ASN113

Nucleic acids
Unit 5 U1 U2 U3 U4 U5 U6

Ligands
Unit 6 GOL1115
Unit 7 GOL1114

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany