Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE FIMX EAL DOMAIN IN COMPLEX WITH REACTION PRODUCT PGPG
Keywords HYDROLASE, CDIGMP BIOFILM, PHOSPHODIESTERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4AFY     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   FIMX  A 250 1951 0
2  Protein   FIMX  B 251 1961 0
3  RNA    C 2 46 0
4  RNA    D 2 46 0
5  Ligand   FIMX  A 4 0 4
6  Ligand   FIMX  B 1 0 1
7 Water     268 0 268
total       778 4004 273
Proteins
Unit 1 MET438 GLN439 ARG440 GLY441 ASP442 VAL443 ILE444 ALA445 ILE446 LEU447 GLN448 GLN449 ALA450 LEU451 GLU452 THR453 ASN454 SER455 PHE456 ARG457 LEU458 LEU459 PHE460 GLN461 PRO462 VAL463 ILE464 SER465 LEU466 ARG467 GLY468 ASP469 SER470 HIS471 GLU472 ASN473 TYR474 GLU475 VAL476 LEU477 LEU478 ARG479 LEU480 LEU481 ASN482 PRO483 GLN484 GLY485 GLN486 GLU487 VAL488 PRO489 PRO490 ALA491 GLU492 PHE493 LEU494 HIS495 ALA496 ALA497 LYS498 GLU499 ALA500 GLY501 LEU502 ALA503 GLU504 LYS505 ILE506 ASP507 ARG508 TRP509 VAL510 ILE511 LEU512 ASN513 SER514 ILE515 LYS516 LEU517 LEU518 ALA519 GLU520 HIS521 ARG522 ALA523 LYS524 GLY525 HIS526 GLN527 THR528 LYS529 LEU530 PHE531 VAL532 HIS533 LEU534 SER535 SER536 ALA537 SER538 LEU539 GLN540 ASP541 PRO542 GLY543 LEU544 LEU545 PRO546 TRP547 LEU548 GLY549 VAL550 ALA551 LEU552 LYS553 ALA554 ALA555 ARG556 LEU557 PRO558 PRO559 GLU560 SER561 LEU562 VAL563 PHE564 GLN565 ILE566 SER567 GLU568 ALA569 ASP570 ALA571 THR572 SER573 TYR574 LEU575 LYS576 GLN577 ALA578 LYS579 GLN580 LEU581 THR582 GLN583 GLY584 LEU585 ALA586 THR587 LEU588 HIS589 CYS590 GLN591 ALA592 ALA593 ILE594 SER595 GLN596 PHE597 GLY598 CYS599 SER600 LEU601 ASN602 PRO603 PHE604 ASN605 ALA606 LEU607 LYS608 HIS609 LEU610 THR611 VAL612 GLN613 PHE614 ILE615 LYS616 ILE617 ASP618 GLY619 SER620 PHE621 VAL622 GLN623 ASP624 LEU625 ASN626 GLN627 VAL628 GLU629 ASN630 GLN631 GLU632 ILE633 LEU634 LYS635 GLY636 LEU637 ILE638 ALA639 GLU640 LEU641 HIS642 GLU643 GLN644 GLN645 LYS646 LEU647 SER648 ILE649 VAL650 PRO651 PHE652 VAL653 GLU654 SER655 ALA656 SER657 VAL658 LEU659 ALA660 THR661 LEU662 TRP663 GLN664 ALA665 GLY666 ALA667 THR668 TYR669 ILE670 GLN671 GLY672 TYR673 TYR674 LEU675 GLN676 GLY677 PRO678 SER679 GLN680 ALA681 MET682 ASP683 TYR684 ASP685 PHE686 SER687
Unit 2 HIS437 MET438 GLN439 ARG440 GLY441 ASP442 VAL443 ILE444 ALA445 ILE446 LEU447 GLN448 GLN449 ALA450 LEU451 GLU452 THR453 ASN454 SER455 PHE456 ARG457 LEU458 LEU459 PHE460 GLN461 PRO462 VAL463 ILE464 SER465 LEU466 ARG467 GLY468 ASP469 SER470 HIS471 GLU472 ASN473 TYR474 GLU475 VAL476 LEU477 LEU478 ARG479 LEU480 LEU481 ASN482 PRO483 GLN484 GLY485 GLN486 GLU487 VAL488 PRO489 PRO490 ALA491 GLU492 PHE493 LEU494 HIS495 ALA496 ALA497 LYS498 GLU499 ALA500 GLY501 LEU502 ALA503 GLU504 LYS505 ILE506 ASP507 ARG508 TRP509 VAL510 ILE511 LEU512 ASN513 SER514 ILE515 LYS516 LEU517 LEU518 ALA519 GLU520 HIS521 ARG522 ALA523 LYS524 GLY525 HIS526 GLN527 THR528 LYS529 LEU530 PHE531 VAL532 HIS533 LEU534 SER535 SER536 ALA537 SER538 LEU539 GLN540 ASP541 PRO542 GLY543 LEU544 LEU545 PRO546 TRP547 LEU548 GLY549 VAL550 ALA551 LEU552 LYS553 ALA554 ALA555 ARG556 LEU557 PRO558 PRO559 GLU560 SER561 LEU562 VAL563 PHE564 GLN565 ILE566 SER567 GLU568 ALA569 ASP570 ALA571 THR572 SER573 TYR574 LEU575 LYS576 GLN577 ALA578 LYS579 GLN580 LEU581 THR582 GLN583 GLY584 LEU585 ALA586 THR587 LEU588 HIS589 CYS590 GLN591 ALA592 ALA593 ILE594 SER595 GLN596 PHE597 GLY598 CYS599 SER600 LEU601 ASN602 PRO603 PHE604 ASN605 ALA606 LEU607 LYS608 HIS609 LEU610 THR611 VAL612 GLN613 PHE614 ILE615 LYS616 ILE617 ASP618 GLY619 SER620 PHE621 VAL622 GLN623 ASP624 LEU625 ASN626 GLN627 VAL628 GLU629 ASN630 GLN631 GLU632 ILE633 LEU634 LYS635 GLY636 LEU637 ILE638 ALA639 GLU640 LEU641 HIS642 GLU643 GLN644 GLN645 LYS646 LEU647 SER648 ILE649 VAL650 PRO651 PHE652 VAL653 GLU654 SER655 ALA656 SER657 VAL658 LEU659 ALA660 THR661 LEU662 TRP663 GLN664 ALA665 GLY666 ALA667 THR668 TYR669 ILE670 GLN671 GLY672 TYR673 TYR674 LEU675 GLN676 GLY677 PRO678 SER679 GLN680 ALA681 MET682 ASP683 TYR684 ASP685 PHE686 SER687
Nucleic acids
Unit 3 G1 G2
Unit 4 G1 G2
Ligands
Unit 5 MG801 MG802 NA803 NA804
Unit 6 MG801
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany