4AAP - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF JMJD5 DOMAIN OF HUMAN LYSINE-SPECIFIC D 8 (KDM8) IN COMPLEX WITH N-OXALYLGLYCINE (NOG)
• Keywords: OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	4AAP	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	LYSINE-SPECIFIC DEMETHYLASE 8	A	235	1842	0
2	Protein	LYSINE-SPECIFIC DEMETHYLASE 8	B	233	1830	0
3	Ligand	LYSINE-SPECIFIC DEMETHYLASE 8	A	3	0	12
4	Ligand	LYSINE-SPECIFIC DEMETHYLASE 8	B	3	0	12
5	Water			29	0	29
total				503	3672	53

Proteins

Unit 1

MET 0 LEU 218 GLU 219 LYS 220 THR 221 VAL 222 PRO 223 ARG 224 LEU 225 HIS 226 ARG 227 PRO 228 SER 229 LEU 230 GLN 231 HIS 232 PHE 233 ARG 234 GLU 235 GLN 236 PHE 237 LEU 238 VAL 239 PRO 240 GLY 241 ARG 242 PRO 243 VAL 244 ILE 245 LEU 246 LYS 247 GLY 248 VAL 249 ALA 250 ASP 251 HIS 252 TRP 253 PRO 254 CYS 255 MET 256 GLN 257 LYS 258 TRP 259 SER 260 LEU 261 GLU 262 TYR 263 ILE 264 GLN 265 GLU 266 ILE 267 ALA 268 GLY 269 CYS 270 ARG 271 THR 272 VAL 273 PRO 274 VAL 275 GLU 276 VAL 277 GLY 278 SER 279 ARG 280 TYR 281 THR 282 ASP 283 GLU 284 GLU 285 TRP 286 SER 287 GLN 288 THR 289 LEU 290 MET 291 THR 292 VAL 293 ASN 294 GLU 295 PHE 296 ILE 297 SER 298 LYS 299 TYR 300 ILE 301 VAL 302 ASN 303 ARG 306 ASP 307 VAL 308 GLY 309 TYR 310 LEU 311 ALA 312 GLN 313 HIS 314 GLN 315 LEU 316 PHE 317 ASP 318 GLN 319 ILE 320 PRO 321 GLU 322 LEU 323 LYS 324 GLN 325 ASP 326 ILE 327 SER 328 ILE 329 PRO 330 ASP 331 TYR 332 CYS 333 SER 334 LEU 335 GLY 336 ASP 337 GLY 338 GLU 339 GLU 340 GLU 341 GLU 342 ILE 343 THR 344 ILE 345 ASN 346 ALA 347 TRP 348 PHE 349 GLY 350 PRO 351 GLN 352 GLY 353 THR 354 ILE 355 SER 356 PRO 357 LEU 358 HIS 359 GLN 360 ASP 361 PRO 362 GLN 363 GLN 364 ASN 365 PHE 366 LEU 367 VAL 368 GLN 369 VAL 370 MET 371 GLY 372 ARG 373 LYS 374 TYR 375 ILE 376 ARG 377 LEU 378 TYR 379 SER 380 PRO 381 GLN 382 GLU 383 SER 384 GLY 385 ALA 386 LEU 387 TYR 388 PRO 389 HIS 390 ASP 391 THR 392 HIS 393 LEU 394 HIS 396 ASN 397 THR 398 SER 399 GLN 400 VAL 401 ASP 402 VAL 403 GLU 404 ASN 405 PRO 406 ASP 407 LEU 408 GLU 409 LYS 410 PHE 411 PRO 412 LYS 413 PHE 414 ALA 415 LYS 416 ALA 417 PRO 418 PHE 419 LEU 420 SER 421 CYS 422 ILE 423 LEU 424 SER 425 PRO 426 GLY 427 GLU 428 ILE 429 LEU 430 PHE 431 ILE 432 PRO 433 VAL 434 LYS 435 TYR 436 TRP 437 HIS 438 TYR 439 VAL 440 ARG 441 ALA 442 LEU 443 ASP 444 LEU 445 SER 446 PHE 447 SER 448 VAL 449 SER 450 PHE 451 TRP 452 TRP 453 SER 454

Unit 2

MET 0 LEU 218 GLU 219 LYS 220 THR 221 VAL 222 PRO 223 ARG 224 LEU 225 HIS 226 ARG 227 PRO 228 SER 229 LEU 230 GLN 231 HIS 232 PHE 233 ARG 234 GLU 235 GLN 236 PHE 237 LEU 238 VAL 239 PRO 240 GLY 241 ARG 242 PRO 243 VAL 244 ILE 245 LEU 246 LYS 247 GLY 248 VAL 249 ALA 250 ASP 251 HIS 252 TRP 253 PRO 254 CYS 255 MET 256 GLN 257 LYS 258 TRP 259 SER 260 LEU 261 GLU 262 TYR 263 ILE 264 GLN 265 GLU 266 ILE 267 ALA 268 GLY 269 CYS 270 ARG 271 THR 272 VAL 273 PRO 274 VAL 275 GLU 276 VAL 277 GLY 278 SER 279 ARG 280 TYR 281 THR 282 ASP 283 GLU 284 GLU 285 TRP 286 SER 287 GLN 288 THR 289 LEU 290 MET 291 THR 292 VAL 293 ASN 294 GLU 295 PHE 296 ILE 297 SER 298 LYS 299 TYR 300 ILE 301 VAL 302 ASN 303 ARG 306 ASP 307 VAL 308 GLY 309 TYR 310 LEU 311 ALA 312 GLN 313 HIS 314 GLN 315 LEU 316 PHE 317 ASP 318 GLN 319 ILE 320 PRO 321 GLU 322 LEU 323 LYS 324 GLN 325 ASP 326 ILE 327 SER 328 ILE 329 PRO 330 ASP 331 TYR 332 CYS 333 SER 334 LEU 335 GLY 336 ASP 337 GLY 338 GLU 339 GLU 340 GLU 341 GLU 342 ILE 343 THR 344 ILE 345 ASN 346 ALA 347 TRP 348 PHE 349 GLY 350 PRO 351 GLN 352 GLY 353 THR 354 ILE 355 SER 356 PRO 357 LEU 358 HIS 359 GLN 360 ASP 361 PRO 362 GLN 363 GLN 364 ASN 365 PHE 366 LEU 367 VAL 368 GLN 369 VAL 370 MET 371 GLY 372 ARG 373 LYS 374 TYR 375 ILE 376 ARG 377 LEU 378 TYR 379 SER 380 PRO 381 GLN 382 GLU 383 SER 384 GLY 385 ALA 386 LEU 387 TYR 388 PRO 389 HIS 390 ASP 391 THR 392 HIS 393 ASN 397 THR 398 SER 399 GLN 400 VAL 401 ASP 402 VAL 403 GLU 404 ASN 405 PRO 406 ASP 407 LEU 408 GLU 409 LYS 410 PHE 411 PRO 412 LYS 413 PHE 414 ALA 415 LYS 416 ALA 417 PRO 418 PHE 419 LEU 420 SER 421 CYS 422 ILE 423 LEU 424 SER 425 PRO 426 GLY 427 GLU 428 ILE 429 LEU 430 PHE 431 ILE 432 PRO 433 VAL 434 LYS 435 TYR 436 TRP 437 HIS 438 TYR 439 VAL 440 ARG 441 ALA 442 LEU 443 ASP 444 LEU 445 SER 446 PHE 447 SER 448 VAL 449 SER 450 PHE 451 TRP 452 TRP 453 SER 454

Ligands

Unit 3	ZN 500 OGA 501 ZN 502
Unit 4	ZN 500 OGA 501 ZN 502