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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE S. CEREVISIAE SKI2 INSERTION DOMAIN
Keywords DEXH HELICASE, HYDROLASE, RNA DEGRADATION, EXOSOME
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4A4K     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ANTIVIRAL HELICASE SKI2  A 246 1843 0
2  Protein   ANTIVIRAL HELICASE SKI2  C 245 1843 0
3  Protein   ANTIVIRAL HELICASE SKI2  E 244 1749 0
4  Protein   ANTIVIRAL HELICASE SKI2  G 246 1817 0
5  Protein   ANTIVIRAL HELICASE SKI2  I 245 1832 0
6  Ligand   ANTIVIRAL HELICASE SKI2  A 1 0 1
7  Ligand   ANTIVIRAL HELICASE SKI2  C 1 0 1
8  Ligand   ANTIVIRAL HELICASE SKI2  E 1 0 1
9  Ligand   ANTIVIRAL HELICASE SKI2  G 1 0 1
10  Ligand   ANTIVIRAL HELICASE SKI2  I 1 0 1
total       1231 9084 5
Proteins
Unit 1 THR837 LEU838 GLN839 PRO840 GLU841 HIS842 GLU843 LYS844 GLN845 ILE846 LYS847 VAL848 LEU849 GLN850 GLU851 GLU852 LEU853 GLN854 THR855 ILE856 GLU857 TYR858 LYS859 SER860 CYS861 GLU862 ILE863 CYS864 ASP865 ASN866 ASP867 ILE868 GLU869 LYS870 PHE871 LEU872 GLU873 LEU874 MET875 LEU876 ALA877 TYR878 LYS879 GLU880 ALA881 THR882 VAL883 ASN884 LEU885 MET886 GLN887 GLU888 MET889 VAL890 LYS891 SER892 PRO893 SER894 ILE895 LEU896 HIS897 ILE898 LEU899 LYS900 GLU901 GLY902 ARG903 LEU904 VAL905 ALA906 PHE907 ARG908 ASP909 PRO910 ASN911 ASP912 CYS913 LEU914 LYS915 LEU916 GLY917 PHE918 VAL919 PHE920 LYS921 VAL922 SER923 LEU924 LYS925 ASP926 ALA927 VAL928 CYS929 VAL930 ILE931 MET932 THR933 PHE934 THR935 LYS936 PRO937 TYR938 LYS939 LEU940 PRO941 ASN942 GLY943 GLU944 PRO945 ASN946 HIS947 LEU948 ILE949 TYR950 PHE951 PRO952 LYS953 ALA954 ASP955 GLY956 TYR957 ARG958 ARG959 ARG960 ASN961 PHE962 PRO963 LYS964 PHE965 GLN966 LYS967 THR968 ASP969 PHE970 TYR971 MET972 GLU973 GLU974 VAL975 PRO976 VAL977 THR978 ALA979 ILE980 GLU981 VAL982 ILE983 THR984 LYS985 ARG986 LYS987 PHE988 ALA989 ALA990 PRO991 LEU992 GLY993 LYS994 VAL995 ILE996 LYS997 LYS998 ASP999 VAL1000 ALA1001 ALA1002 LEU1003 ASN1004 GLU1005 PHE1006 ASN1007 ALA1008 GLU1009 THR1010 ASN1011 ASN1012 ILE1013 LEU1014 ASP1015 GLY1016 LYS1017 THR1018 LEU1019 LYS1020 GLU1021 ALA1022 ILE1023 ASN1024 ILE1025 GLU1026 LYS1027 GLN1028 GLY1029 LEU1030 LYS1031 ILE1032 HIS1033 GLN1034 ILE1035 LEU1036 LEU1037 ASP1038 ARG1039 THR1040 ASN1041 ILE1042 ARG1043 ASP1044 GLU1045 ILE1046 PHE1047 LYS1048 LEU1049 LYS1050 SER1051 ILE1052 LYS1053 CYS1054 PRO1055 ASN1056 LEU1057 SER1058 GLN1059 HIS1060 ILE1061 VAL1062 PRO1063 LYS1064 PHE1065 LYS1066 ALA1067 HIS1068 VAL1069 ILE1070 LYS1071 LYS1072 LYS1073 ILE1074 GLU1075 GLU1076 LEU1077 TYR1078 HIS1079 LEU1080 MET1081 SER1082
Unit 2 THR837 LEU838 GLN839 PRO840 GLU841 HIS842 GLU843 LYS844 GLN845 ILE846 LYS847 VAL848 LEU849 GLN850 GLU851 GLU852 LEU853 GLN854 THR855 ILE856 GLU857 TYR858 LYS859 SER860 CYS861 GLU862 ILE863 CYS864 ASP865 ASN866 ASP867 ILE868 GLU869 LYS870 PHE871 LEU872 GLU873 LEU874 MET875 LEU876 ALA877 TYR878 LYS879 GLU880 ALA881 THR882 VAL883 ASN884 LEU885 MET886 GLN887 GLU888 MET889 VAL890 LYS891 SER892 PRO893 SER894 ILE895 LEU896 HIS897 ILE898 LEU899 LYS900 GLU901 GLY902 ARG903 LEU904 VAL905 ALA906 PHE907 ARG908 ASP909 PRO910 ASN911 ASP912 CYS913 LEU914 LYS915 LEU916 GLY917 PHE918 VAL919 PHE920 LYS921 VAL922 SER923 LEU924 LYS925 ASP926 ALA927 VAL928 CYS929 VAL930 ILE931 MET932 THR933 PHE934 THR935 LYS936 PRO937 TYR938 LYS939 LEU940 PRO941 ASN942 GLY943 GLU944 PRO945 ASN946 HIS947 LEU948 ILE949 TYR950 PHE951 PRO952 LYS953 ALA954 ASP955 GLY956 TYR957 ARG958 ARG959 ARG960 ASN961 PHE962 PRO963 LYS964 PHE965 GLN966 LYS967 THR968 ASP969 PHE970 TYR971 MET972 GLU973 GLU974 VAL975 PRO976 VAL977 THR978 ALA979 ILE980 GLU981 VAL982 ILE983 THR984 LYS985 ARG986 LYS987 PHE988 ALA989 ALA990 PRO991 LEU992 GLY993 LYS994 VAL995 ILE996 LYS997 LYS998 ASP999 VAL1000 ALA1001 ALA1002 LEU1003 ASN1004 GLU1005 PHE1006 ASN1007 ALA1008 GLU1009 THR1010 ASN1011 ASN1012 ILE1013 LEU1014 ASP1015 GLY1016 LYS1017 THR1018 LEU1019 LYS1020 GLU1021 ALA1022 ILE1023 ASN1024 ILE1025 GLU1026 LYS1027 GLN1028 GLY1029 LEU1030 LYS1031 ILE1032 HIS1033 GLN1034 ILE1035 LEU1036 LEU1037 ASP1038 ARG1039 THR1040 ASN1041 ILE1042 ARG1043 ASP1044 GLU1045 ILE1046 PHE1047 LYS1048 LEU1049 LYS1050 SER1051 ILE1052 LYS1053 CYS1054 PRO1055 ASN1056 LEU1057 SER1058 GLN1059 HIS1060 ILE1061 VAL1062 PRO1063 LYS1064 PHE1065 LYS1066 ALA1067 HIS1068 VAL1069 ILE1070 LYS1071 LYS1072 LYS1073 ILE1074 GLU1075 GLU1076 LEU1077 TYR1078 HIS1079 LEU1080 MET1081
Unit 3 LEU838 GLN839 PRO840 GLU841 HIS842 GLU843 LYS844 GLN845 ILE846 LYS847 VAL848 LEU849 GLN850 GLU851 GLU852 LEU853 GLN854 THR855 ILE856 GLU857 TYR858 LYS859 SER860 CYS861 GLU862 ILE863 CYS864 ASP865 ASN866 ASP867 ILE868 GLU869 LYS870 PHE871 LEU872 GLU873 LEU874 MET875 LEU876 ALA877 TYR878 LYS879 GLU880 ALA881 THR882 VAL883 ASN884 LEU885 MET886 GLN887 GLU888 MET889 VAL890 LYS891 SER892 PRO893 SER894 ILE895 LEU896 HIS897 ILE898 LEU899 LYS900 GLU901 GLY902 ARG903 LEU904 VAL905 ALA906 PHE907 ARG908 ASP909 PRO910 ASN911 ASP912 CYS913 LEU914 LYS915 LEU916 GLY917 PHE918 VAL919 PHE920 LYS921 VAL922 SER923 LEU924 LYS925 ASP926 ALA927 VAL928 CYS929 VAL930 ILE931 MET932 THR933 PHE934 THR935 LYS936 PRO937 TYR938 LYS939 LEU940 PRO941 ASN942 GLY943 GLU944 PRO945 ASN946 HIS947 LEU948 ILE949 TYR950 PHE951 PRO952 LYS953 ALA954 ASP955 GLY956 TYR957 ARG958 ARG959 ARG960 ASN961 PHE962 PRO963 LYS964 PHE965 GLN966 LYS967 THR968 ASP969 PHE970 TYR971 MET972 GLU973 GLU974 VAL975 PRO976 VAL977 THR978 ALA979 ILE980 GLU981 VAL982 ILE983 THR984 LYS985 ARG986 LYS987 PHE988 ALA989 ALA990 PRO991 LEU992 GLY993 LYS994 VAL995 ILE996 LYS997 LYS998 ASP999 VAL1000 ALA1001 ALA1002 LEU1003 ASN1004 GLU1005 PHE1006 ASN1007 ALA1008 GLU1009 THR1010 ASN1011 ASN1012 ILE1013 LEU1014 ASP1015 GLY1016 LYS1017 THR1018 LEU1019 LYS1020 GLU1021 ALA1022 ILE1023 ASN1024 ILE1025 GLU1026 LYS1027 GLN1028 GLY1029 LEU1030 LYS1031 ILE1032 HIS1033 GLN1034 ILE1035 LEU1036 LEU1037 ASP1038 ARG1039 THR1040 ASN1041 ILE1042 ARG1043 ASP1044 GLU1045 ILE1046 PHE1047 LYS1048 LEU1049 LYS1050 SER1051 ILE1052 LYS1053 CYS1054 PRO1055 ASN1056 LEU1057 SER1058 GLN1059 HIS1060 ILE1061 VAL1062 PRO1063 LYS1064 PHE1065 LYS1066 ALA1067 HIS1068 VAL1069 ILE1070 LYS1071 LYS1072 LYS1073 ILE1074 GLU1075 GLU1076 LEU1077 TYR1078 HIS1079 LEU1080 MET1081
Unit 4 THR837 LEU838 GLN839 PRO840 GLU841 HIS842 GLU843 LYS844 GLN845 ILE846 LYS847 VAL848 LEU849 GLN850 GLU851 GLU852 LEU853 GLN854 THR855 ILE856 GLU857 TYR858 LYS859 SER860 CYS861 GLU862 ILE863 CYS864 ASP865 ASN866 ASP867 ILE868 GLU869 LYS870 PHE871 LEU872 GLU873 LEU874 MET875 LEU876 ALA877 TYR878 LYS879 GLU880 ALA881 THR882 VAL883 ASN884 LEU885 MET886 GLN887 GLU888 MET889 VAL890 LYS891 SER892 PRO893 SER894 ILE895 LEU896 HIS897 ILE898 LEU899 LYS900 GLU901 GLY902 ARG903 LEU904 VAL905 ALA906 PHE907 ARG908 ASP909 PRO910 ASN911 ASP912 CYS913 LEU914 LYS915 LEU916 GLY917 PHE918 VAL919 PHE920 LYS921 VAL922 SER923 LEU924 LYS925 ASP926 ALA927 VAL928 CYS929 VAL930 ILE931 MET932 THR933 PHE934 THR935 LYS936 PRO937 TYR938 LYS939 LEU940 PRO941 ASN942 GLY943 GLU944 PRO945 ASN946 HIS947 LEU948 ILE949 TYR950 PHE951 PRO952 LYS953 ALA954 ASP955 GLY956 TYR957 ARG958 ARG959 ARG960 ASN961 PHE962 PRO963 LYS964 PHE965 GLN966 LYS967 THR968 ASP969 PHE970 TYR971 MET972 GLU973 GLU974 VAL975 PRO976 VAL977 THR978 ALA979 ILE980 GLU981 VAL982 ILE983 THR984 LYS985 ARG986 LYS987 PHE988 ALA989 ALA990 PRO991 LEU992 GLY993 LYS994 VAL995 ILE996 LYS997 LYS998 ASP999 VAL1000 ALA1001 ALA1002 LEU1003 ASN1004 GLU1005 PHE1006 ASN1007 ALA1008 GLU1009 THR1010 ASN1011 ASN1012 ILE1013 LEU1014 ASP1015 GLY1016 LYS1017 THR1018 LEU1019 LYS1020 GLU1021 ALA1022 ILE1023 ASN1024 ILE1025 GLU1026 LYS1027 GLN1028 GLY1029 LEU1030 LYS1031 ILE1032 HIS1033 GLN1034 ILE1035 LEU1036 LEU1037 ASP1038 ARG1039 THR1040 ASN1041 ILE1042 ARG1043 ASP1044 GLU1045 ILE1046 PHE1047 LYS1048 LEU1049 LYS1050 SER1051 ILE1052 LYS1053 CYS1054 PRO1055 ASN1056 LEU1057 SER1058 GLN1059 HIS1060 ILE1061 VAL1062 PRO1063 LYS1064 PHE1065 LYS1066 ALA1067 HIS1068 VAL1069 ILE1070 LYS1071 LYS1072 LYS1073 ILE1074 GLU1075 GLU1076 LEU1077 TYR1078 HIS1079 LEU1080 MET1081 SER1082
Unit 5 LEU838 GLN839 PRO840 GLU841 HIS842 GLU843 LYS844 GLN845 ILE846 LYS847 VAL848 LEU849 GLN850 GLU851 GLU852 LEU853 GLN854 THR855 ILE856 GLU857 TYR858 LYS859 SER860 CYS861 GLU862 ILE863 CYS864 ASP865 ASN866 ASP867 ILE868 GLU869 LYS870 PHE871 LEU872 GLU873 LEU874 MET875 LEU876 ALA877 TYR878 LYS879 GLU880 ALA881 THR882 VAL883 ASN884 LEU885 MET886 GLN887 GLU888 MET889 VAL890 LYS891 SER892 PRO893 SER894 ILE895 LEU896 HIS897 ILE898 LEU899 LYS900 GLU901 GLY902 ARG903 LEU904 VAL905 ALA906 PHE907 ARG908 ASP909 PRO910 ASN911 ASP912 CYS913 LEU914 LYS915 LEU916 GLY917 PHE918 VAL919 PHE920 LYS921 VAL922 SER923 LEU924 LYS925 ASP926 ALA927 VAL928 CYS929 VAL930 ILE931 MET932 THR933 PHE934 THR935 LYS936 PRO937 TYR938 LYS939 LEU940 PRO941 ASN942 GLY943 GLU944 PRO945 ASN946 HIS947 LEU948 ILE949 TYR950 PHE951 PRO952 LYS953 ALA954 ASP955 GLY956 TYR957 ARG958 ARG959 ARG960 ASN961 PHE962 PRO963 LYS964 PHE965 GLN966 LYS967 THR968 ASP969 PHE970 TYR971 MET972 GLU973 GLU974 VAL975 PRO976 VAL977 THR978 ALA979 ILE980 GLU981 VAL982 ILE983 THR984 LYS985 ARG986 LYS987 PHE988 ALA989 ALA990 PRO991 LEU992 GLY993 LYS994 VAL995 ILE996 LYS997 LYS998 ASP999 VAL1000 ALA1001 ALA1002 LEU1003 ASN1004 GLU1005 PHE1006 ASN1007 ALA1008 GLU1009 THR1010 ASN1011 ASN1012 ILE1013 LEU1014 ASP1015 GLY1016 LYS1017 THR1018 LEU1019 LYS1020 GLU1021 ALA1022 ILE1023 ASN1024 ILE1025 GLU1026 LYS1027 GLN1028 GLY1029 LEU1030 LYS1031 ILE1032 HIS1033 GLN1034 ILE1035 LEU1036 LEU1037 ASP1038 ARG1039 THR1040 ASN1041 ILE1042 ARG1043 ASP1044 GLU1045 ILE1046 PHE1047 LYS1048 LEU1049 LYS1050 SER1051 ILE1052 LYS1053 CYS1054 PRO1055 ASN1056 LEU1057 SER1058 GLN1059 HIS1060 ILE1061 VAL1062 PRO1063 LYS1064 PHE1065 LYS1066 ALA1067 HIS1068 VAL1069 ILE1070 LYS1071 LYS1072 LYS1073 ILE1074 GLU1075 GLU1076 LEU1077 TYR1078 HIS1079 LEU1080 MET1081 SER1082
Ligands
Unit 6 ZN2083
Unit 7 ZN2083
Unit 8 ZN2083
Unit 9 ZN2083
Unit 10 ZN2083
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany