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Sequence, Chains, Asymmetric and Biological Units

Title YKUD FROM B.SUBTILIS
Keywords TRANSFERASE, PEPTIDOGLYCAN SYNTHESIS
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4A1I     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PUTATIVE L, D-TRANSPEPTIDASE YKUD  A 165 1239 0
2  Protein   PUTATIVE L, D-TRANSPEPTIDASE YKUD  B 165 1239 0
3  Protein   PUTATIVE L, D-TRANSPEPTIDASE YKUD  C 165 1239 0
4  Protein   PUTATIVE L, D-TRANSPEPTIDASE YKUD  D 165 1239 0
5  Protein   PUTATIVE L, D-TRANSPEPTIDASE YKUD  E 164 1235 0
6  Protein   PUTATIVE L, D-TRANSPEPTIDASE YKUD  F 164 1235 0
7  Protein   PUTATIVE L, D-TRANSPEPTIDASE YKUD  G 164 1235 0
8  Protein   PUTATIVE L, D-TRANSPEPTIDASE YKUD  H 164 1235 0
9  Ligand   PUTATIVE L, D-TRANSPEPTIDASE YKUD  A 6 0 22
10  Ligand   PUTATIVE L, D-TRANSPEPTIDASE YKUD  B 4 0 12
11  Ligand   PUTATIVE L, D-TRANSPEPTIDASE YKUD  C 5 0 17
12  Ligand   PUTATIVE L, D-TRANSPEPTIDASE YKUD  D 3 0 7
13  Ligand   PUTATIVE L, D-TRANSPEPTIDASE YKUD  E 5 0 17
14  Ligand   PUTATIVE L, D-TRANSPEPTIDASE YKUD  F 5 0 17
15  Ligand   PUTATIVE L, D-TRANSPEPTIDASE YKUD  G 5 0 17
16  Ligand   PUTATIVE L, D-TRANSPEPTIDASE YKUD  H 5 0 17
17 Water     1541 0 1541
total       2895 9896 1667
Proteins
Unit 1 GLY0 MET1 LEU2 THR3 TYR4 GLN5 VAL6 LYS7 GLN8 GLY9 ASP10 THR11 LEU12 ASN13 SER14 ILE15 ALA16 ALA17 ASP18 PHE19 ARG20 ILE21 SER22 THR23 ALA24 ALA25 LEU26 LEU27 GLN28 ALA29 ASN30 PRO31 SER32 LEU33 GLN34 ALA35 GLY36 LEU37 THR38 ALA39 GLY40 GLN41 SER42 ILE43 VAL44 ILE45 PRO46 GLY47 LEU48 PRO49 ASP50 PRO51 TYR52 THR53 ILE54 PRO55 TYR56 HIS57 ILE58 ALA59 VAL60 SER61 ILE62 GLY63 ALA64 LYS65 THR66 LEU67 THR68 LEU69 SER70 LEU71 ASN72 ASN73 ARG74 VAL75 MET76 LYS77 THR78 TYR79 PRO80 ILE81 ALA82 VAL83 GLY84 LYS85 ILE86 LEU87 THR88 GLN89 THR90 PRO91 THR92 GLY93 GLU94 PHE95 TYR96 ILE97 ILE98 ASN99 ARG100 GLN101 ARG102 ASN103 PRO104 GLY105 GLY106 PRO107 PHE108 GLY109 ALA110 TYR111 TRP112 LEU113 SER114 LEU115 SER116 ALA117 ALA118 HIS119 TYR120 GLY121 ILE122 HIS123 GLY124 THR125 ASN126 ASN127 PRO128 ALA129 SER130 ILE131 GLY132 LYS133 ALA134 VAL135 SER136 LYS137 GLY138 CYS139 ILE140 ARG141 MET142 HIS143 ASN144 LYS145 ASP146 VAL147 ILE148 GLU149 LEU150 ALA151 SER152 ILE153 VAL154 PRO155 ASN156 GLY157 THR158 ARG159 VAL160 THR161 ILE162 ASN163 ARG164
Unit 2 GLY0 MET1 LEU2 THR3 TYR4 GLN5 VAL6 LYS7 GLN8 GLY9 ASP10 THR11 LEU12 ASN13 SER14 ILE15 ALA16 ALA17 ASP18 PHE19 ARG20 ILE21 SER22 THR23 ALA24 ALA25 LEU26 LEU27 GLN28 ALA29 ASN30 PRO31 SER32 LEU33 GLN34 ALA35 GLY36 LEU37 THR38 ALA39 GLY40 GLN41 SER42 ILE43 VAL44 ILE45 PRO46 GLY47 LEU48 PRO49 ASP50 PRO51 TYR52 THR53 ILE54 PRO55 TYR56 HIS57 ILE58 ALA59 VAL60 SER61 ILE62 GLY63 ALA64 LYS65 THR66 LEU67 THR68 LEU69 SER70 LEU71 ASN72 ASN73 ARG74 VAL75 MET76 LYS77 THR78 TYR79 PRO80 ILE81 ALA82 VAL83 GLY84 LYS85 ILE86 LEU87 THR88 GLN89 THR90 PRO91 THR92 GLY93 GLU94 PHE95 TYR96 ILE97 ILE98 ASN99 ARG100 GLN101 ARG102 ASN103 PRO104 GLY105 GLY106 PRO107 PHE108 GLY109 ALA110 TYR111 TRP112 LEU113 SER114 LEU115 SER116 ALA117 ALA118 HIS119 TYR120 GLY121 ILE122 HIS123 GLY124 THR125 ASN126 ASN127 PRO128 ALA129 SER130 ILE131 GLY132 LYS133 ALA134 VAL135 SER136 LYS137 GLY138 CYS139 ILE140 ARG141 MET142 HIS143 ASN144 LYS145 ASP146 VAL147 ILE148 GLU149 LEU150 ALA151 SER152 ILE153 VAL154 PRO155 ASN156 GLY157 THR158 ARG159 VAL160 THR161 ILE162 ASN163 ARG164
Unit 3 GLY0 MET1 LEU2 THR3 TYR4 GLN5 VAL6 LYS7 GLN8 GLY9 ASP10 THR11 LEU12 ASN13 SER14 ILE15 ALA16 ALA17 ASP18 PHE19 ARG20 ILE21 SER22 THR23 ALA24 ALA25 LEU26 LEU27 GLN28 ALA29 ASN30 PRO31 SER32 LEU33 GLN34 ALA35 GLY36 LEU37 THR38 ALA39 GLY40 GLN41 SER42 ILE43 VAL44 ILE45 PRO46 GLY47 LEU48 PRO49 ASP50 PRO51 TYR52 THR53 ILE54 PRO55 TYR56 HIS57 ILE58 ALA59 VAL60 SER61 ILE62 GLY63 ALA64 LYS65 THR66 LEU67 THR68 LEU69 SER70 LEU71 ASN72 ASN73 ARG74 VAL75 MET76 LYS77 THR78 TYR79 PRO80 ILE81 ALA82 VAL83 GLY84 LYS85 ILE86 LEU87 THR88 GLN89 THR90 PRO91 THR92 GLY93 GLU94 PHE95 TYR96 ILE97 ILE98 ASN99 ARG100 GLN101 ARG102 ASN103 PRO104 GLY105 GLY106 PRO107 PHE108 GLY109 ALA110 TYR111 TRP112 LEU113 SER114 LEU115 SER116 ALA117 ALA118 HIS119 TYR120 GLY121 ILE122 HIS123 GLY124 THR125 ASN126 ASN127 PRO128 ALA129 SER130 ILE131 GLY132 LYS133 ALA134 VAL135 SER136 LYS137 GLY138 CYS139 ILE140 ARG141 MET142 HIS143 ASN144 LYS145 ASP146 VAL147 ILE148 GLU149 LEU150 ALA151 SER152 ILE153 VAL154 PRO155 ASN156 GLY157 THR158 ARG159 VAL160 THR161 ILE162 ASN163 ARG164
Unit 4 GLY0 MET1 LEU2 THR3 TYR4 GLN5 VAL6 LYS7 GLN8 GLY9 ASP10 THR11 LEU12 ASN13 SER14 ILE15 ALA16 ALA17 ASP18 PHE19 ARG20 ILE21 SER22 THR23 ALA24 ALA25 LEU26 LEU27 GLN28 ALA29 ASN30 PRO31 SER32 LEU33 GLN34 ALA35 GLY36 LEU37 THR38 ALA39 GLY40 GLN41 SER42 ILE43 VAL44 ILE45 PRO46 GLY47 LEU48 PRO49 ASP50 PRO51 TYR52 THR53 ILE54 PRO55 TYR56 HIS57 ILE58 ALA59 VAL60 SER61 ILE62 GLY63 ALA64 LYS65 THR66 LEU67 THR68 LEU69 SER70 LEU71 ASN72 ASN73 ARG74 VAL75 MET76 LYS77 THR78 TYR79 PRO80 ILE81 ALA82 VAL83 GLY84 LYS85 ILE86 LEU87 THR88 GLN89 THR90 PRO91 THR92 GLY93 GLU94 PHE95 TYR96 ILE97 ILE98 ASN99 ARG100 GLN101 ARG102 ASN103 PRO104 GLY105 GLY106 PRO107 PHE108 GLY109 ALA110 TYR111 TRP112 LEU113 SER114 LEU115 SER116 ALA117 ALA118 HIS119 TYR120 GLY121 ILE122 HIS123 GLY124 THR125 ASN126 ASN127 PRO128 ALA129 SER130 ILE131 GLY132 LYS133 ALA134 VAL135 SER136 LYS137 GLY138 CYS139 ILE140 ARG141 MET142 HIS143 ASN144 LYS145 ASP146 VAL147 ILE148 GLU149 LEU150 ALA151 SER152 ILE153 VAL154 PRO155 ASN156 GLY157 THR158 ARG159 VAL160 THR161 ILE162 ASN163 ARG164
Unit 5 MET1 LEU2 THR3 TYR4 GLN5 VAL6 LYS7 GLN8 GLY9 ASP10 THR11 LEU12 ASN13 SER14 ILE15 ALA16 ALA17 ASP18 PHE19 ARG20 ILE21 SER22 THR23 ALA24 ALA25 LEU26 LEU27 GLN28 ALA29 ASN30 PRO31 SER32 LEU33 GLN34 ALA35 GLY36 LEU37 THR38 ALA39 GLY40 GLN41 SER42 ILE43 VAL44 ILE45 PRO46 GLY47 LEU48 PRO49 ASP50 PRO51 TYR52 THR53 ILE54 PRO55 TYR56 HIS57 ILE58 ALA59 VAL60 SER61 ILE62 GLY63 ALA64 LYS65 THR66 LEU67 THR68 LEU69 SER70 LEU71 ASN72 ASN73 ARG74 VAL75 MET76 LYS77 THR78 TYR79 PRO80 ILE81 ALA82 VAL83 GLY84 LYS85 ILE86 LEU87 THR88 GLN89 THR90 PRO91 THR92 GLY93 GLU94 PHE95 TYR96 ILE97 ILE98 ASN99 ARG100 GLN101 ARG102 ASN103 PRO104 GLY105 GLY106 PRO107 PHE108 GLY109 ALA110 TYR111 TRP112 LEU113 SER114 LEU115 SER116 ALA117 ALA118 HIS119 TYR120 GLY121 ILE122 HIS123 GLY124 THR125 ASN126 ASN127 PRO128 ALA129 SER130 ILE131 GLY132 LYS133 ALA134 VAL135 SER136 LYS137 GLY138 CYS139 ILE140 ARG141 MET142 HIS143 ASN144 LYS145 ASP146 VAL147 ILE148 GLU149 LEU150 ALA151 SER152 ILE153 VAL154 PRO155 ASN156 GLY157 THR158 ARG159 VAL160 THR161 ILE162 ASN163 ARG164
Unit 6 MET1 LEU2 THR3 TYR4 GLN5 VAL6 LYS7 GLN8 GLY9 ASP10 THR11 LEU12 ASN13 SER14 ILE15 ALA16 ALA17 ASP18 PHE19 ARG20 ILE21 SER22 THR23 ALA24 ALA25 LEU26 LEU27 GLN28 ALA29 ASN30 PRO31 SER32 LEU33 GLN34 ALA35 GLY36 LEU37 THR38 ALA39 GLY40 GLN41 SER42 ILE43 VAL44 ILE45 PRO46 GLY47 LEU48 PRO49 ASP50 PRO51 TYR52 THR53 ILE54 PRO55 TYR56 HIS57 ILE58 ALA59 VAL60 SER61 ILE62 GLY63 ALA64 LYS65 THR66 LEU67 THR68 LEU69 SER70 LEU71 ASN72 ASN73 ARG74 VAL75 MET76 LYS77 THR78 TYR79 PRO80 ILE81 ALA82 VAL83 GLY84 LYS85 ILE86 LEU87 THR88 GLN89 THR90 PRO91 THR92 GLY93 GLU94 PHE95 TYR96 ILE97 ILE98 ASN99 ARG100 GLN101 ARG102 ASN103 PRO104 GLY105 GLY106 PRO107 PHE108 GLY109 ALA110 TYR111 TRP112 LEU113 SER114 LEU115 SER116 ALA117 ALA118 HIS119 TYR120 GLY121 ILE122 HIS123 GLY124 THR125 ASN126 ASN127 PRO128 ALA129 SER130 ILE131 GLY132 LYS133 ALA134 VAL135 SER136 LYS137 GLY138 CYS139 ILE140 ARG141 MET142 HIS143 ASN144 LYS145 ASP146 VAL147 ILE148 GLU149 LEU150 ALA151 SER152 ILE153 VAL154 PRO155 ASN156 GLY157 THR158 ARG159 VAL160 THR161 ILE162 ASN163 ARG164
Unit 7 MET1 LEU2 THR3 TYR4 GLN5 VAL6 LYS7 GLN8 GLY9 ASP10 THR11 LEU12 ASN13 SER14 ILE15 ALA16 ALA17 ASP18 PHE19 ARG20 ILE21 SER22 THR23 ALA24 ALA25 LEU26 LEU27 GLN28 ALA29 ASN30 PRO31 SER32 LEU33 GLN34 ALA35 GLY36 LEU37 THR38 ALA39 GLY40 GLN41 SER42 ILE43 VAL44 ILE45 PRO46 GLY47 LEU48 PRO49 ASP50 PRO51 TYR52 THR53 ILE54 PRO55 TYR56 HIS57 ILE58 ALA59 VAL60 SER61 ILE62 GLY63 ALA64 LYS65 THR66 LEU67 THR68 LEU69 SER70 LEU71 ASN72 ASN73 ARG74 VAL75 MET76 LYS77 THR78 TYR79 PRO80 ILE81 ALA82 VAL83 GLY84 LYS85 ILE86 LEU87 THR88 GLN89 THR90 PRO91 THR92 GLY93 GLU94 PHE95 TYR96 ILE97 ILE98 ASN99 ARG100 GLN101 ARG102 ASN103 PRO104 GLY105 GLY106 PRO107 PHE108 GLY109 ALA110 TYR111 TRP112 LEU113 SER114 LEU115 SER116 ALA117 ALA118 HIS119 TYR120 GLY121 ILE122 HIS123 GLY124 THR125 ASN126 ASN127 PRO128 ALA129 SER130 ILE131 GLY132 LYS133 ALA134 VAL135 SER136 LYS137 GLY138 CYS139 ILE140 ARG141 MET142 HIS143 ASN144 LYS145 ASP146 VAL147 ILE148 GLU149 LEU150 ALA151 SER152 ILE153 VAL154 PRO155 ASN156 GLY157 THR158 ARG159 VAL160 THR161 ILE162 ASN163 ARG164
Unit 8 MET1 LEU2 THR3 TYR4 GLN5 VAL6 LYS7 GLN8 GLY9 ASP10 THR11 LEU12 ASN13 SER14 ILE15 ALA16 ALA17 ASP18 PHE19 ARG20 ILE21 SER22 THR23 ALA24 ALA25 LEU26 LEU27 GLN28 ALA29 ASN30 PRO31 SER32 LEU33 GLN34 ALA35 GLY36 LEU37 THR38 ALA39 GLY40 GLN41 SER42 ILE43 VAL44 ILE45 PRO46 GLY47 LEU48 PRO49 ASP50 PRO51 TYR52 THR53 ILE54 PRO55 TYR56 HIS57 ILE58 ALA59 VAL60 SER61 ILE62 GLY63 ALA64 LYS65 THR66 LEU67 THR68 LEU69 SER70 LEU71 ASN72 ASN73 ARG74 VAL75 MET76 LYS77 THR78 TYR79 PRO80 ILE81 ALA82 VAL83 GLY84 LYS85 ILE86 LEU87 THR88 GLN89 THR90 PRO91 THR92 GLY93 GLU94 PHE95 TYR96 ILE97 ILE98 ASN99 ARG100 GLN101 ARG102 ASN103 PRO104 GLY105 GLY106 PRO107 PHE108 GLY109 ALA110 TYR111 TRP112 LEU113 SER114 LEU115 SER116 ALA117 ALA118 HIS119 TYR120 GLY121 ILE122 HIS123 GLY124 THR125 ASN126 ASN127 PRO128 ALA129 SER130 ILE131 GLY132 LYS133 ALA134 VAL135 SER136 LYS137 GLY138 CYS139 ILE140 ARG141 MET142 HIS143 ASN144 LYS145 ASP146 VAL147 ILE148 GLU149 LEU150 ALA151 SER152 ILE153 VAL154 PRO155 ASN156 GLY157 THR158 ARG159 VAL160 THR161 ILE162 ASN163 ARG164
Ligands
Unit 9 SO41165 SO41166 SO41167 SO41168 CD1169 CL1170
Unit 10 SO41165 SO41166 CD1167 CL1168
Unit 11 SO41165 SO41166 SO41167 CD1168 CL1169
Unit 12 SO41165 CD1166 CL1167
Unit 13 SO41165 SO41166 SO41167 CD1168 CL1169
Unit 14 SO41165 SO41166 SO41167 CD1168 CL1169
Unit 15 SO41165 SO41166 SO41167 CD1168 CL1169
Unit 16 SO41165 SO41166 SO41167 CD1168 CL1169
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany