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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF HSDDB1-DRDDB2 BOUND TO A 13 BP CPD-DUPLEX (PURI POSITION) AT 3.0 A RESOLUTION (CPD 1)
Keywords DNA-BINDING PROTEIN-DNA COMPLEX, DNA DAMAGE REPAIR
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4A08     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNA DAMAGE-BINDING PROTEIN 1  A 1088 8509 0
2  Protein   DNA DAMAGE-BINDING PROTEIN 2  B 353 2824 0
3  Other macromolecule    G 10 185 40
4  Other macromolecule    H 13 266 0
5  Ligand   DNA DAMAGE-BINDING PROTEIN 1  A 2 0 24
6  Ligand   DNA DAMAGE-BINDING PROTEIN 2  B 1 0 1
7  Ligand    H 1 0 1
8 Water     16 0 16
total       1484 11784 82
Proteins
Unit 1 SER2 TYR3 ASN4 TYR5 VAL6 VAL7 THR8 ALA9 GLN10 LYS11 PRO12 THR13 ALA14 VAL15 ASN16 GLY17 CYS18 VAL19 THR20 GLY21 HIS22 PHE23 THR24 SER25 ALA26 GLU27 ASP28 LEU29 ASN30 LEU31 LEU32 ILE33 ALA34 LYS35 ASN36 THR37 ARG38 LEU39 GLU40 ILE41 TYR42 VAL43 VAL44 THR45 ALA46 GLU47 GLY48 LEU49 ARG50 PRO51 VAL52 LYS53 GLU54 VAL55 GLY56 MET57 TYR58 GLY59 LYS60 ILE61 ALA62 VAL63 MET64 GLU65 LEU66 PHE67 ARG68 PRO69 LYS70 GLY71 GLU72 SER73 LYS74 ASP75 LEU76 LEU77 PHE78 ILE79 LEU80 THR81 ALA82 LYS83 TYR84 ASN85 ALA86 CYS87 ILE88 LEU89 GLU90 TYR91 LYS92 GLN93 ILE98 ASP99 ILE100 ILE101 THR102 ARG103 ALA104 HIS105 GLY106 ASN107 VAL108 GLN109 ASP110 ARG111 ILE112 GLY113 ARG114 PRO115 SER116 GLU117 THR118 GLY119 ILE120 ILE121 GLY122 ILE123 ILE124 ASP125 PRO126 GLU127 CYS128 ARG129 MET130 ILE131 GLY132 LEU133 ARG134 LEU135 TYR136 ASP137 GLY138 LEU139 PHE140 LYS141 VAL142 ILE143 PRO144 LEU145 ASP146 ARG147 ASP148 ASN149 LYS150 GLU151 LEU152 LYS153 ALA154 PHE155 ASN156 ILE157 ARG158 LEU159 GLU160 GLU161 LEU162 HIS163 VAL164 ILE165 ASP166 VAL167 LYS168 PHE169 LEU170 TYR171 GLY172 CYS173 GLN174 ALA175 PRO176 THR177 ILE178 CYS179 PHE180 VAL181 TYR182 GLN183 ASP184 PRO185 GLN186 GLY187 ARG188 HIS189 VAL190 LYS191 THR192 TYR193 ALA194 VAL195 SER196 LEU197 ARG198 GLU199 LYS200 GLU201 PHE202 ASN203 LYS204 GLY205 PRO206 TRP207 LYS208 GLN209 GLU210 ASN211 VAL212 GLU213 ALA214 GLU215 ALA216 SER217 MET218 VAL219 ILE220 ALA221 VAL222 PRO223 GLU224 PRO225 PHE226 GLY227 GLY228 ALA229 ILE230 ILE231 ILE232 GLY233 GLN234 GLU235 SER236 ILE237 THR238 TYR239 HIS240 ASN241 GLY242 ASP243 LYS244 TYR245 LEU246 ALA247 ILE248 ALA249 PRO250 PRO251 ILE252 ILE253 LYS254 GLN255 SER256 THR257 ILE258 VAL259 CYS260 HIS261 ASN262 ARG263 VAL264 ASP265 PRO266 ASN267 GLY268 SER269 ARG270 TYR271 LEU272 LEU273 GLY274 ASP275 MET276 GLU277 GLY278 ARG279 LEU280 PHE281 MET282 LEU283 LEU284 LEU285 GLU286 LYS287 VAL295 THR296 LEU297 LYS298 ASP299 LEU300 ARG301 VAL302 GLU303 LEU304 LEU305 GLY306 GLU307 THR308 SER309 ILE310 ALA311 GLU312 CYS313 LEU314 THR315 TYR316 LEU317 ASP318 ASN319 GLY320 VAL321 VAL322 PHE323 VAL324 GLY325 SER326 ARG327 LEU328 GLY329 ASP330 SER331 GLN332 LEU333 VAL334 LYS335 LEU336 ASN337 VAL338 ASP339 SER340 ASN341 GLU342 GLN343 GLY344 SER345 TYR346 VAL347 VAL348 ALA349 MET350 GLU351 THR352 PHE353 THR354 ASN355 LEU356 GLY357 PRO358 ILE359 VAL360 ASP361 MET362 CYS363 VAL364 VAL365 ASP366 LEU367 GLU368 ARG369 GLN370 GLY373 GLN374 LEU375 VAL376 THR377 CYS378 SER379 GLY380 ALA381 PHE382 LYS383 GLU384 GLY385 SER386 LEU387 ARG388 ILE389 ILE390 ARG391 ASN392 GLY393 ILE394 GLY395 ILE396 HIS397 GLU398 HIS399 ALA400 SER401 ILE402 ASP403 LEU404 PRO405 GLY406 ILE407 LYS408 GLY409 LEU410 TRP411 PRO412 LEU413 ARG414 SER415 ASP416 PRO417 ASN418 ARG419 GLU420 THR421 ASP422 ASP423 THR424 LEU425 VAL426 LEU427 SER428 PHE429 VAL430 GLY431 GLN432 THR433 ARG434 VAL435 LEU436 MET437 LEU438 VAL443 GLU444 GLU445 THR446 GLU447 LEU448 MET449 GLY450 PHE451 VAL452 ASP453 ASP454 GLN455 GLN456 THR457 PHE458 PHE459 CYS460 GLY461 ASN462 VAL463 ALA464 HIS465 GLN466 GLN467 LEU468 ILE469 GLN470 ILE471 THR472 SER473 ALA474 SER475 VAL476 ARG477 LEU478 VAL479 SER480 GLN481 GLU482 PRO483 LYS484 ALA485 LEU486 VAL487 SER488 GLU489 TRP490 LYS491 GLU492 PRO493 GLN494 ALA495 LYS496 ASN497 ILE498 SER499 VAL500 ALA501 SER502 CYS503 ASN504 SER505 SER506 GLN507 VAL508 VAL509 VAL510 ALA511 VAL512 GLY513 ARG514 ALA515 LEU516 TYR517 TYR518 LEU519 GLN520 ILE521 HIS522 PRO523 GLN524 GLU525 LEU526 ARG527 GLN528 ILE529 SER530 HIS531 THR532 GLU533 MET534 GLU535 HIS536 GLU537 VAL538 ALA539 CYS540 LEU541 ASP542 ILE543 THR544 PRO545 LEU546 GLY547 ASP548 SER549 ASN550 GLY551 LEU552 SER553 PRO554 LEU555 CYS556 ALA557 ILE558 GLY559 LEU560 TRP561 THR562 ASP563 ILE564 SER565 ALA566 ARG567 ILE568 LEU569 LYS570 LEU571 PRO572 SER573 PHE574 GLU575 LEU576 LEU577 HIS578 LYS579 GLU580 MET581 LEU582 GLY583 GLY584 GLU585 ILE586 ILE587 PRO588 ARG589 SER590 ILE591 LEU592 MET593 THR594 THR595 PHE596 GLU597 SER598 SER599 HIS600 TYR601 LEU602 LEU603 CYS604 ALA605 LEU606 GLY607 ASP608 GLY609 ALA610 LEU611 PHE612 TYR613 PHE614 GLY615 LEU616 ASN617 ILE618 GLU619 THR620 GLY621 LEU622 LEU623 SER624 ASP625 ARG626 LYS627 LYS628 VAL629 THR630 LEU631 GLY632 THR633 GLN634 PRO635 THR636 VAL637 LEU638 ARG639 THR640 PHE641 ARG642 SER643 LEU644 SER645 THR646 THR647 ASN648 VAL649 PHE650 ALA651 CYS652 SER653 ASP654 ARG655 PRO656 THR657 VAL658 ILE659 TYR660 SER661 SER662 ASN663 HIS664 LYS665 LEU666 VAL667 PHE668 SER669 ASN670 VAL671 ASN672 LEU673 LYS674 GLU675 VAL676 ASN677 TYR678 MET679 CYS680 PRO681 LEU682 ASN683 SER684 ASP685 GLY686 TYR687 PRO688 ASP689 SER690 LEU691 ALA692 LEU693 ALA694 ASN695 ASN696 SER697 THR698 LEU699 THR700 ILE701 GLY702 THR703 ILE704 ASP705 GLU706 ILE707 GLN708 LYS709 LEU710 HIS711 ILE712 ARG713 THR714 VAL715 PRO716 LEU717 TYR718 GLU719 SER720 PRO721 ARG722 LYS723 ILE724 CYS725 TYR726 GLN727 GLU728 VAL729 SER730 GLN731 CYS732 PHE733 GLY734 VAL735 LEU736 SER737 SER738 ARG739 ILE740 GLU741 VAL742 GLN743 GLY747 GLY748 THR749 THR750 ALA751 LEU752 ARG753 PRO754 SER755 ALA756 SER757 THR758 GLN759 ALA760 LEU761 SER762 SER763 SER764 VAL765 SER766 SER767 SER768 LYS769 LEU770 PHE771 GLU784 GLU785 VAL786 GLU787 VAL788 HIS789 ASN790 LEU791 LEU792 ILE793 ILE794 ASP795 GLN796 HIS797 THR798 PHE799 GLU800 VAL801 LEU802 HIS803 ALA804 HIS805 GLN806 PHE807 LEU808 GLN809 ASN810 GLU811 TYR812 ALA813 LEU814 SER815 LEU816 VAL817 SER818 CYS819 LYS820 LEU821 GLY822 LYS823 ASP824 PRO825 ASN826 THR827 TYR828 PHE829 ILE830 VAL831 GLY832 THR833 ALA834 MET835 VAL836 TYR837 PRO838 GLU839 GLU840 ALA841 GLU842 PRO843 LYS844 GLN845 GLY846 ARG847 ILE848 VAL849 VAL850 PHE851 GLN852 TYR853 SER854 ASP855 GLY856 LYS857 LEU858 GLN859 THR860 VAL861 ALA862 GLU863 LYS864 GLU865 VAL866 LYS867 GLY868 ALA869 VAL870 TYR871 SER872 MET873 VAL874 GLU875 PHE876 ASN877 GLY878 LYS879 LEU880 LEU881 ALA882 SER883 ILE884 ASN885 SER886 THR887 VAL888 ARG889 LEU890 TYR891 GLU892 TRP893 THR894 THR895 GLU896 LYS897 GLU898 LEU899 ARG900 THR901 GLU902 CYS903 ASN904 HIS905 TYR906 ASN907 ASN908 ILE909 MET910 ALA911 LEU912 TYR913 LEU914 LYS915 THR916 LYS917 GLY918 ASP919 PHE920 ILE921 LEU922 VAL923 GLY924 ASP925 LEU926 MET927 ARG928 SER929 VAL930 LEU931 LEU932 LEU933 ALA934 TYR935 LYS936 PRO937 MET938 GLU939 GLY940 ASN941 PHE942 GLU943 GLU944 ILE945 ALA946 ARG947 ASP948 PHE949 ASN950 PRO951 ASN952 TRP953 MET954 SER955 ALA956 VAL957 GLU958 ILE959 LEU960 ASP961 ASP962 ASP963 ASN964 PHE965 LEU966 GLY967 ALA968 GLU969 ASN970 ALA971 PHE972 ASN973 LEU974 PHE975 VAL976 CYS977 GLN978 LYS979 ASP980 GLN990 HIS991 LEU992 GLN993 GLU994 VAL995 GLY996 LEU997 PHE998 HIS999 LEU1000 GLY1001 GLU1002 PHE1003 VAL1004 ASN1005 VAL1006 PHE1007 CYS1008 HIS1009 GLY1010 SER1011 LEU1012 VAL1013 THR1024 GLN1025 GLY1026 SER1027 VAL1028 LEU1029 PHE1030 GLY1031 THR1032 VAL1033 ASN1034 GLY1035 MET1036 ILE1037 GLY1038 LEU1039 VAL1040 THR1041 SER1042 LEU1043 SER1044 GLU1045 SER1046 TRP1047 TYR1048 ASN1049 LEU1050 LEU1051 LEU1052 ASP1053 MET1054 GLN1055 ASN1056 ARG1057 LEU1058 ASN1059 LYS1060 VAL1061 ILE1062 LYS1063 SER1064 VAL1065 GLY1066 LYS1067 ILE1068 GLU1069 HIS1070 SER1071 PHE1072 TRP1073 ARG1074 SER1075 PHE1076 HIS1077 THR1078 GLU1079 ARG1080 LYS1081 THR1082 GLU1083 PRO1084 ALA1085 THR1086 GLY1087 PHE1088 ILE1089 ASP1090 GLY1091 ASP1092 LEU1093 ILE1094 GLU1095 SER1096 PHE1097 LEU1098 ASP1099 ILE1100 SER1101 ARG1102 PRO1103 LYS1104 MET1105 GLN1106 GLU1107 VAL1108 VAL1109 ALA1110 ASN1111 LEU1112 GLN1113 TYR1114 ASP1115 ASP1116 GLY1117 SER1118 GLY1119 MET1120 LYS1121 ARG1122 GLU1123 ALA1124 THR1125 ALA1126 ASP1127 ASP1128 LEU1129 ILE1130 LYS1131 VAL1132 VAL1133 GLU1134 GLU1135 LEU1136 THR1137 ARG1138 ILE1139 HIS1140
Unit 2 THR103 SER104 ILE105 LEU106 HIS107 TYR108 ILE109 TYR110 LYS111 SER112 SER113 LEU114 GLY115 GLN116 SER117 ILE118 HIS119 ALA120 GLN121 LEU122 ARG123 GLN124 CYS125 LEU126 GLN127 GLU128 PRO129 PHE130 ILE131 ARG132 SER133 LEU134 LYS135 SER136 TYR137 LYS138 LEU139 HIS140 ARG141 THR142 ALA143 SER144 PRO145 PHE146 ASP147 ARG148 ARG149 VAL150 THR151 SER152 LEU153 GLU154 TRP155 HIS156 PRO157 THR158 HIS159 PRO160 THR161 THR162 VAL163 ALA164 VAL165 GLY166 SER167 LYS168 GLY169 GLY170 ASP171 ILE172 ILE173 LEU174 TRP175 ASP176 TYR177 ASP178 VAL179 GLN180 ASN181 LYS182 THR183 SER184 PHE185 ILE186 GLN187 GLY188 MET189 GLY190 PRO191 GLY192 ASP193 ALA194 ILE195 THR196 GLY197 MET198 LYS199 PHE200 ASN201 GLN202 PHE203 ASN204 THR205 ASN206 GLN207 LEU208 PHE209 VAL210 SER211 SER212 ILE213 ARG214 GLY215 ALA216 THR217 THR218 LEU219 ARG220 ASP221 PHE222 SER223 GLY224 SER225 VAL226 ILE227 GLN228 VAL229 PHE230 ALA231 LYS232 THR233 ASP234 SER235 TRP236 ASP237 TYR238 TRP239 TYR240 CYS241 CYS242 VAL243 ASP244 VAL245 SER246 VAL247 SER248 ARG249 GLN250 MET251 LEU252 ALA253 THR254 GLY255 ASP256 SER257 THR258 GLY259 ARG260 LEU261 LEU262 LEU263 LEU264 GLY265 LEU266 ASP267 GLY268 HIS269 GLU270 ILE271 PHE272 LYS273 GLU274 LYS275 LEU276 HIS277 LYS278 ALA279 LYS280 VAL281 THR282 HIS283 ALA284 GLU285 PHE286 ASN287 PRO288 ARG289 CYS290 ASP291 TRP292 LEU293 MET294 ALA295 THR296 SER297 SER298 VAL299 ASP300 ALA301 THR302 VAL303 LYS304 LEU305 TRP306 ASP307 LEU308 ARG309 ASN310 ILE311 LYS312 ASP313 LYS314 ASN315 SER316 TYR317 ILE318 ALA319 GLU320 MET321 PRO322 HIS323 GLU324 LYS325 PRO326 VAL327 ASN328 ALA329 ALA330 TYR331 PHE332 ASN333 PRO334 THR335 ASP336 SER337 THR338 LYS339 LEU340 LEU341 THR342 THR343 ASP344 GLN345 ARG346 ASN347 GLU348 ILE349 ARG350 VAL351 TYR352 SER353 SER354 TYR355 ASP356 TRP357 SER358 LYS359 PRO360 ASP361 GLN362 ILE363 ILE364 ILE365 HIS366 PRO367 HIS368 ARG369 GLN370 PHE371 GLN372 HIS373 LEU374 THR375 PRO376 ILE377 LYS378 ALA379 THR380 TRP381 HIS382 PRO383 MET384 TYR385 ASP386 LEU387 ILE388 VAL389 ALA390 GLY391 ARG392 TYR393 PRO394 ASP395 ASP396 GLN397 LEU398 LEU399 LEU400 ASN401 ASP402 LYS403 ARG404 THR405 ILE406 ASP407 ILE408 TYR409 ASP410 ALA411 ASN412 SER413 GLY414 GLY415 LEU416 VAL417 HIS418 GLN419 LEU420 ARG421 ASP422 PRO423 ASN424 ALA425 ALA426 GLY427 ILE428 ILE429 SER430 LEU431 ASN432 LYS433 PHE434 SER435 PRO436 THR437 GLY438 ASP439 VAL440 LEU441 ALA442 SER443 GLY444 MET445 GLY446 PHE447 ASN448 ILE449 LEU450 ILE451 TRP452 ASN453 ARG454 GLU455
Other macromolecules
Unit 3 DC2 DG3 DC4 DG5 DA6 TTD7 DG9 DC10 DG11 DC12
Unit 4 DG2 DG3 DG4 DC5 DG6 DC7 DC8 DC9 DT10 DC11 DG12 DC13 DG14
Ligands
Unit 5 MES2141 MES2142
Unit 6 CA1456
Unit 7 CA1015
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany