487D - Sequence, Chains, Asymmetric and Biological Units

• Title: SEVEN RIBOSOMAL PROTEINS FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP OF THE LARGE 50S SUBUNIT AT 7.5 ANGSTROMS RESOLUTION
• Keywords: RIBOSOME, LARGE RIBOSOMAL SUBUNIT, RIBOSOMAL PROTEIN, PROTEIN BIOSYNTHESIS, EM-RECONSTRUCTION, ATOMIC STRUCTURE, 3D ARRANGEMENT, FITTING
• Experiment: ELECTRON MICROSCOPY
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	487D	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PROTEIN (50S L1 RIBOSOMAL PROTEIN)	H	224	1712	0
2	Protein	PROTEIN (50S L2 RIBOSOMAL PROTEIN)	I	135	1000	24
3	Protein	PROTEIN (50S L6 RIBOSOMAL PROTEIN)	J	164	1251	0
4	Protein	PROTEIN (50S L9 RIBOSOMAL PROTEIN)	K	149	1435	0
5	Protein	PROTEIN (50S L11 RIBOSOMAL PROTEIN)	L	133	1000	0
6	Protein	PROTEIN (50S L14 RIBOSOMAL PROTEIN)	M	122	937	0
7	Protein	PROTEIN (50S L25 RIBOSOMAL PROTEIN)	N	94	1415	0
8	Ligand	PROTEIN (50S L25 RIBOSOMAL PROTEIN)	N	2	0	4
total				1023	8750	28

Proteins

Unit 1	LYS 5 ARG 6 TYR 7 ARG 8 ALA 9 LEU 10 LEU 11 GLU 12 LYS 13 VAL 14 ASP 15 PRO 16 ASN 17 LYS 18 ILE 19 TYR 20 THR 21 ILE 22 ASP 23 GLU 24 ALA 25 ALA 26 HIS 27 LEU 28 VAL 29 LYS 30 GLU 31 LEU 32 ALA 33 THR 34 ALA 35 LYS 36 PHE 37 ASP 38 GLU 39 THR 40 VAL 41 GLU 42 VAL 43 HIS 44 ALA 45 LYS 46 LEU 47 GLY 48 ILE 49 ASP 50 PRO 51 ARG 52 ARG 53 SER 54 ASP 55 GLN 56 ASN 57 VAL 58 ARG 59 GLY 60 THR 61 VAL 62 SER 63 LEU 64 PRO 65 HIS 66 GLY 67 LEU 68 GLY 69 LYS 70 GLN 71 VAL 72 ARG 73 VAL 74 LEU 75 ALA 76 ILE 77 ALA 78 LYS 79 GLY 80 GLU 81 LYS 82 ILE 83 LYS 84 GLU 85 ALA 86 GLU 87 GLU 88 ALA 89 GLY 90 ALA 91 ASP 92 TYR 93 VAL 94 GLY 95 GLY 96 GLU 97 GLU 98 ILE 99 ILE 100 GLN 101 LYS 102 ILE 103 LEU 104 ASP 105 GLY 106 TRP 107 MET 108 ASP 109 PHE 110 ASP 111 ALA 112 VAL 113 VAL 114 ALA 115 THR 116 PRO 117 ASP 118 VAL 119 MET 120 GLY 121 ALA 122 VAL 123 GLY 124 SER 125 LYS 126 LEU 127 GLY 128 ARG 129 ILE 130 LEU 131 GLY 132 PRO 133 ARG 134 GLY 135 LEU 136 LEU 137 PRO 138 ASN 139 PRO 140 LYS 141 ALA 142 GLY 143 THR 144 VAL 145 GLY 146 PHE 147 ASN 148 ILE 149 GLY 150 GLU 151 ILE 152 ILE 153 ARG 154 GLU 155 ILE 156 LYS 157 ALA 158 GLY 159 ARG 160 ILE 161 GLU 162 PHE 163 ARG 164 ASN 165 ASP 166 LYS 167 THR 168 GLY 169 ALA 170 ILE 171 HIS 172 ALA 173 PRO 174 VAL 175 GLY 176 LYS 177 ALA 178 CYS 179 PHE 180 PRO 181 PRO 182 GLU 183 LYS 184 LEU 185 ALA 186 ASP 187 ASN 188 ILE 189 ARG 190 ALA 191 PHE 192 ILE 193 ARG 194 ALA 195 LEU 196 GLU 197 ALA 198 HIS 199 LYS 200 PRO 201 GLU 202 GLY 203 ALA 204 LYS 205 GLY 206 THR 207 PHE 208 LEU 209 ARG 210 SER 211 VAL 212 TYR 213 VAL 214 THR 215 THR 216 THR 217 MET 218 GLY 219 PRO 220 SER 221 VAL 222 ARG 223 ILE 224 ASN 225 PRO 226 HIS 227 SER 228
Unit 2	GLN 60 TYR 61 ARG 62 ILE 63 ILE 64 ASP 65 PHE 66 LYS 67 ARG 68 ASP 69 LYS 70 ASP 71 GLY 72 ILE 73 PRO 74 GLY 75 ARG 76 VAL 77 ALA 78 THR 79 ILE 80 GLU 81 TYR 82 ASP 83 PRO 84 ASN 85 ARG 86 SER 87 ALA 88 ASN 89 ILE 90 ALA 91 LEU 92 ILE 93 ASN 94 TYR 95 ALA 96 ASP 97 GLY 98 GLU 99 LYS 100 ARG 101 TYR 102 ILE 103 ILE 104 ALA 105 PRO 106 LYS 107 ASN 108 LEU 109 LYS 110 VAL 111 GLY 112 MSE 113 GLU 114 ILE 115 MSE 116 SER 117 GLY 118 PRO 119 ASP 120 ALA 121 ASP 122 ILE 123 LYS 124 ILE 125 GLY 126 ASN 127 ALA 128 LEU 129 PRO 130 LEU 131 GLU 132 ASN 133 ILE 134 PRO 135 VAL 136 GLY 137 THR 138 LEU 139 VAL 140 HIS 141 ASN 142 ILE 143 GLU 144 LEU 145 LYS 146 PRO 147 GLY 148 ARG 149 GLY 150 GLY 151 GLN 152 LEU 153 VAL 154 ARG 155 ALA 156 ALA 157 GLY 158 THR 159 SER 160 ALA 161 GLN 162 VAL 163 LEU 164 GLY 165 LYS 166 GLU 167 GLY 168 LYS 169 TYR 170 VAL 171 ILE 172 VAL 173 ARG 174 LEU 175 ALA 176 SER 177 GLY 178 GLU 179 VAL 180 ARG 181 MSE 182 ILE 183 LEU 184 GLY 185 LYS 186 CYS 187 ARG 188 ALA 189 THR 190 VAL 191 GLY 192 GLU 193 VAL 194
Unit 3	PRO 7 ILE 8 GLU 9 ILE 10 PRO 11 ALA 12 GLY 13 VAL 14 THR 15 VAL 16 THR 17 VAL 18 ASN 19 GLY 20 ASN 21 THR 22 VAL 23 THR 24 VAL 25 LYS 26 GLY 27 PRO 28 LYS 29 GLY 30 GLU 31 LEU 32 THR 33 ARG 34 THR 35 PHE 36 HIS 37 PRO 38 ASP 39 MET 40 THR 41 ILE 42 THR 43 VAL 44 GLU 45 GLY 46 ASN 47 VAL 48 ILE 49 THR 50 VAL 51 THR 52 ARG 53 PRO 54 SER 55 ASP 56 GLU 57 LYS 58 HIS 59 HIS 60 ARG 61 ALA 62 LEU 63 HIS 64 GLY 65 THR 66 THR 67 ARG 68 SER 69 LEU 70 LEU 71 ALA 72 ASN 73 MET 74 VAL 75 GLU 76 GLY 77 VAL 78 SER 79 LYS 80 GLY 81 TYR 82 GLU 83 LYS 84 ALA 85 LEU 86 GLU 87 LEU 88 VAL 89 GLY 90 VAL 91 GLY 92 TYR 93 ARG 94 ALA 95 SER 96 LYS 97 GLN 98 GLY 99 LYS 100 LYS 101 LEU 102 VAL 103 LEU 104 SER 105 VAL 106 GLY 107 TYR 108 SER 109 HIS 110 PRO 111 VAL 112 GLU 113 ILE 114 GLU 115 PRO 116 GLU 117 GLU 118 GLY 119 LEU 120 GLU 121 ILE 122 GLU 123 VAL 124 PRO 125 SER 126 GLN 127 THR 128 LYS 129 ILE 130 ILE 131 VAL 132 LYS 133 GLY 134 ALA 135 ASP 136 LYS 137 GLN 138 ARG 139 VAL 140 GLY 141 GLU 142 LEU 143 ALA 144 ALA 145 ASN 146 ILE 147 ARG 148 ALA 149 VAL 150 ARG 151 PRO 152 PRO 153 GLU 154 PRO 155 TYR 156 LYS 157 GLY 158 LYS 159 GLY 160 ILE 161 ARG 162 TYR 163 GLU 164 GLY 165 GLU 166 LEU 167 VAL 168 ARG 169 LEU 170
Unit 4	MET 1 LYS 2 VAL 3 ILE 4 PHE 5 LEU 6 LYS 7 ASP 8 VAL 9 LYS 10 GLY 11 LYS 12 GLY 13 LYS 14 LYS 15 GLY 16 GLU 17 ILE 18 LYS 19 ASN 20 VAL 21 ALA 22 ASP 23 GLY 24 TYR 25 ALA 26 ASN 27 ASN 28 PHE 29 LEU 30 PHE 31 LYS 32 GLN 33 GLY 34 LEU 35 ALA 36 ILE 37 GLU 38 ALA 39 THR 40 PRO 41 ALA 42 ASN 43 LEU 44 LYS 45 ALA 46 LEU 47 GLU 48 ALA 49 GLN 50 LYS 51 GLN 52 LYS 53 GLU 54 GLN 55 ARG 56 GLN 57 ALA 58 ALA 59 GLU 60 GLU 61 LEU 62 ALA 63 ASN 64 ALA 65 LYS 66 LYS 67 LEU 68 LYS 69 GLU 70 GLN 71 LEU 72 GLU 73 LYS 74 LEU 75 THR 76 VAL 77 THR 78 ILE 79 PRO 80 ALA 81 LYS 82 ALA 83 GLY 84 GLU 85 GLY 86 GLY 87 ARG 88 LEU 89 PHE 90 GLY 91 SER 92 ILE 93 THR 94 SER 95 LYS 96 GLN 97 ILE 98 ALA 99 GLU 100 SER 101 LEU 102 GLN 103 ALA 104 GLN 105 HIS 106 GLY 107 LEU 108 LYS 109 LEU 110 ASP 111 LYS 112 ARG 113 LYS 114 ILE 115 GLU 116 LEU 117 ALA 118 ASP 119 ALA 120 ILE 121 ARG 122 ALA 123 LEU 124 GLY 125 TYR 126 THR 127 ASN 128 VAL 129 PRO 130 VAL 131 LYS 132 LEU 133 HIS 134 PRO 135 GLU 136 VAL 137 THR 138 ALA 139 THR 140 LEU 141 LYS 142 VAL 143 HIS 144 VAL 145 THR 146 GLU 147 GLN 148 LYS 149
Unit 5	GLN 8 ILE 9 LYS 10 LEU 11 GLN 12 LEU 13 PRO 14 ALA 15 GLY 16 LYS 17 ALA 18 THR 19 PRO 20 ALA 21 PRO 22 PRO 23 VAL 24 GLY 25 PRO 26 ALA 27 LEU 28 GLY 29 GLN 30 HIS 31 GLY 32 VAL 33 ASN 34 ILE 35 MET 36 GLU 37 PHE 38 CYS 39 LYS 40 ARG 41 PHE 42 ASN 43 ALA 44 GLU 45 THR 46 ALA 47 ASP 48 LYS 49 ALA 50 GLY 51 MET 52 ILE 53 LEU 54 PRO 55 VAL 56 VAL 57 ILE 58 THR 59 VAL 60 TYR 61 GLU 62 ASP 63 LYS 64 SER 65 PHE 66 THR 67 PHE 68 ILE 69 ILE 70 LYS 71 THR 72 PRO 73 PRO 74 ALA 75 SER 76 PHE 77 LEU 78 LEU 79 LYS 80 LYS 81 ALA 82 ALA 83 GLY 84 ILE 85 GLU 86 LYS 87 GLY 88 SER 89 SER 90 GLU 91 PRO 92 LYS 93 ARG 94 LYS 95 ILE 96 VAL 97 GLY 98 LYS 99 VAL 100 THR 101 ARG 102 LYS 103 GLN 104 ILE 105 GLU 106 GLU 107 ILE 108 ALA 109 LYS 110 THR 111 LYS 112 MET 113 PRO 114 ASP 115 LEU 116 ASN 117 ALA 118 ASN 119 SER 120 LEU 121 GLU 122 ALA 123 ALA 124 MET 125 LYS 126 ILE 127 ILE 128 GLU 129 GLY 130 THR 131 ALA 132 LYS 133 SER 134 MET 135 GLY 136 ILE 137 GLU 138 VAL 139 VAL 140
Unit 6	MET 1 ILE 2 GLN 3 GLN 4 GLU 5 SER 6 ARG 7 LEU 8 LYS 9 VAL 10 ALA 11 ASP 12 ASN 13 SER 14 GLY 15 ALA 16 ARG 17 GLU 18 VAL 19 LEU 20 VAL 21 ILE 22 LYS 23 VAL 24 LEU 25 GLY 26 GLY 27 SER 28 GLY 29 ARG 30 ARG 31 TYR 32 ALA 33 ASN 34 ILE 35 GLY 36 ASP 37 VAL 38 VAL 39 VAL 40 ALA 41 THR 42 VAL 43 LYS 44 ASP 45 ALA 46 THR 47 PRO 48 GLY 49 GLY 50 VAL 51 VAL 52 LYS 53 LYS 54 GLY 55 GLN 56 VAL 57 VAL 58 LYS 59 ALA 60 VAL 61 VAL 62 VAL 63 ARG 64 THR 65 LYS 66 ARG 67 GLY 68 VAL 69 ARG 70 ARG 71 PRO 72 ASP 73 GLY 74 SER 75 TYR 76 ILE 77 ARG 78 PHE 79 ASP 80 GLU 81 ASN 82 ALA 83 CYS 84 VAL 85 ILE 86 ILE 87 ARG 88 ASP 89 ASP 90 LYS 91 SER 92 PRO 93 ARG 94 GLY 95 THR 96 ARG 97 ILE 98 PHE 99 GLY 100 PRO 101 VAL 102 ALA 103 ARG 104 GLU 105 LEU 106 ARG 107 ASP 108 LYS 109 ASP 110 PHE 111 MET 112 LYS 113 ILE 114 ILE 115 SER 116 LEU 117 ALA 118 PRO 119 GLU 120 VAL 121 ILE 122
Unit 7	MET 1 PHE 2 THR 3 ILE 4 ASN 5 ALA 6 GLU 7 VAL 8 ARG 9 LYS 10 GLU 11 GLN 12 GLY 13 LYS 14 GLY 15 ALA 16 SER 17 ARG 18 ARG 19 LEU 20 ARG 21 ALA 22 ALA 23 ASN 24 LYS 25 PHE 26 PRO 27 ALA 28 ILE 29 ILE 30 TYR 31 GLY 32 GLY 33 LYS 34 GLU 35 ALA 36 PRO 37 LEU 38 ALA 39 ILE 40 GLU 41 LEU 42 ASP 43 HIS 44 ASP 45 LYS 46 VAL 47 MET 48 ASN 49 MET 50 GLN 51 ALA 52 LYS 53 ALA 54 GLU 55 PHE 56 TYR 57 SER 58 GLU 59 VAL 60 LEU 61 THR 62 ILE 63 VAL 64 VAL 65 ASP 66 GLY 67 LYS 68 GLU 69 ILE 70 LYS 71 VAL 72 LYS 73 ALA 74 GLN 75 ASP 76 VAL 77 GLN 78 ARG 79 HIS 80 PRO 81 TYR 82 LYS 83 PRO 84 LYS 85 LEU 86 GLN 87 HIS 88 ILE 89 ASP 90 PHE 91 VAL 92 ARG 93 ALA 94

Ligands

Unit 8

NH2 95 FMT 96