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Title | CRYSTAL STRUCTURE OF RAT PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE 1 (RPMFE1) COMPLEXED WITH (2S,3S)-3-HYDROXY-2- METHYLBUTANOYL-COA | |
Keywords | BETA OXIDATION PATHWAY, OXIDOREDUCTASE, LIPID METABOLISM, LY ISOMERASE, PEROXISOME, FATTY ACID METABOLISM | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3ZW9 | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | PEROXISOMAL BIFUNCTIONAL ENZYME | A | 723 | 5544 | 0 |
2 | Protein | PEROXISOMAL BIFUNCTIONAL ENZYME | B | 719 | 5524 | 0 |
3 | Ligand | PEROXISOMAL BIFUNCTIONAL ENZYME | A | 3 | 0 | 104 |
4 | Ligand | PEROXISOMAL BIFUNCTIONAL ENZYME | B | 4 | 0 | 109 |
5 | Water | 114 | 0 | 114 | ||
total | 1563 | 11068 | 327 |
Unit 1 | GLY-2 SER-1 HIS0 MET1 ALA2 GLU3 TYR4 LEU5 ARG6 LEU7 PRO8 HIS9 SER10 LEU11 ALA12 MET13 ILE14 ARG15 LEU16 CYS17 ASN18 PRO19 PRO20 VAL21 ASN22 ALA23 VAL24 SER25 PRO26 THR27 VAL28 ILE29 ARG30 GLU31 VAL32 ARG33 ASN34 GLY35 LEU36 GLN37 LYS38 ALA39 GLY40 SER41 ASP42 HIS43 THR44 VAL45 LYS46 ALA47 ILE48 VAL49 ILE50 CYS51 GLY52 ALA53 ASN54 GLY55 ASN56 PHE57 CYS58 ALA59 GLY60 ALA61 ASP62 ILE63 HIS64 GLY65 PHE66 SER67 ALA68 PHE69 THR70 PRO71 GLY72 LEU73 ALA74 LEU75 GLY76 SER77 LEU78 VAL79 ASP80 GLU81 ILE82 GLN83 ARG84 TYR85 GLN86 LYS87 PRO88 VAL89 LEU90 ALA91 ALA92 ILE93 GLN94 GLY95 VAL96 ALA97 LEU98 GLY99 GLY100 GLY101 LEU102 GLU103 LEU104 ALA105 LEU106 GLY107 CYS108 HIS109 TYR110 ARG111 ILE112 ALA113 ASN114 ALA115 LYS116 ALA117 ARG118 VAL119 GLY120 LEU121 PRO122 GLU123 VAL124 THR125 LEU126 GLY127 ILE128 LEU129 PRO130 GLY131 ALA132 ARG133 GLY134 THR135 GLN136 LEU137 LEU138 PRO139 ARG140 VAL141 VAL142 GLY143 VAL144 PRO145 VAL146 ALA147 LEU148 ASP149 LEU150 ILE151 THR152 SER153 GLY154 LYS155 TYR156 LEU157 SER158 ALA159 ASP160 GLU161 ALA162 LEU163 ARG164 LEU165 GLY166 ILE167 LEU168 ASP169 ALA170 VAL171 VAL172 LYS173 SER174 ASP175 PRO176 VAL177 GLU178 GLU179 ALA180 ILE181 LYS182 PHE183 ALA184 GLN185 LYS186 ILE187 ILE188 ASP189 LYS190 PRO191 ILE192 GLU193 PRO194 ARG195 ARG196 ILE197 PHE198 ASN199 LYS200 PRO201 VAL202 PRO203 SER204 LEU205 PRO206 ASN207 MET208 ASP209 SER210 VAL211 PHE212 ALA213 GLU214 ALA215 ILE216 ALA217 LYS218 VAL219 ARG220 LYS221 GLN222 TYR223 PRO224 GLY225 VAL226 LEU227 ALA228 PRO229 GLU230 THR231 CYS232 VAL233 ARG234 SER235 ILE236 GLN237 ALA238 SER239 VAL240 LYS241 HIS242 PRO243 TYR244 GLU245 VAL246 GLY247 ILE248 LYS249 GLU250 GLU251 GLU252 LYS253 LEU254 PHE255 MET256 TYR257 LEU258 ARG259 ALA260 SER261 GLY262 GLN263 ALA264 LYS265 ALA266 LEU267 GLN268 TYR269 ALA270 PHE271 PHE272 ALA273 GLU274 LYS275 SER276 ALA277 ASN278 LYS279 TRP280 SER281 THR282 PRO283 SER284 GLY285 ALA286 SER287 TRP288 LYS289 THR290 ALA291 SER292 ALA293 GLN294 PRO295 VAL296 SER297 SER298 VAL299 GLY300 VAL301 LEU302 GLY303 LEU304 GLY305 THR306 MET307 GLY308 ARG309 GLY310 ILE311 ALA312 ILE313 SER314 PHE315 ALA316 ARG317 VAL318 GLY319 ILE320 SER321 VAL322 VAL323 ALA324 VAL325 GLU326 SER327 ASP328 PRO329 LYS330 GLN331 LEU332 ASP333 ALA334 ALA335 LYS336 LYS337 ILE338 ILE339 THR340 PHE341 THR342 LEU343 GLU344 LYS345 GLU346 ALA347 SER348 ARG349 ALA350 HIS351 GLN352 ASN353 GLY354 GLN355 ALA356 SER357 ALA358 LYS359 PRO360 LYS361 LEU362 ARG363 PHE364 SER365 SER366 SER367 THR368 LYS369 GLU370 LEU371 SER372 THR373 VAL374 ASP375 LEU376 VAL377 VAL378 GLU379 ALA380 VAL381 PHE382 GLU383 ASP384 MET385 ASN386 LEU387 LYS388 LYS389 LYS390 VAL391 PHE392 ALA393 GLU394 LEU395 SER396 ALA397 LEU398 CYS399 LYS400 PRO401 GLY402 ALA403 PHE404 LEU405 CYS406 THR407 ASN408 THR409 SER410 ALA411 LEU412 ASN413 VAL414 ASP415 ASP416 ILE417 ALA418 SER419 SER420 THR421 ASP422 ARG423 PRO424 GLN425 LEU426 VAL427 ILE428 GLY429 THR430 HIS431 PHE432 PHE433 SER434 PRO435 ALA436 HIS437 VAL438 MET439 ARG440 LEU441 LEU442 GLU443 VAL444 ILE445 PRO446 SER447 ARG448 TYR449 SER450 SER451 PRO452 THR453 THR454 ILE455 ALA456 THR457 VAL458 MET459 SER460 LEU461 SER462 LYS463 LYS464 ILE465 GLY466 LYS467 ILE468 GLY469 VAL470 VAL471 VAL472 GLY473 ASN474 CYS475 TYR476 GLY477 PHE478 VAL479 GLY480 ASN481 ARG482 MET483 LEU484 ALA485 PRO486 TYR487 TYR488 ASN489 GLN490 GLY491 PHE492 PHE493 LEU494 LEU495 GLU496 GLU497 GLY498 SER499 LYS500 PRO501 GLU502 ASP503 VAL504 ASP505 GLY506 VAL507 LEU508 GLU509 GLU510 PHE511 GLY512 PHE513 LYS514 MET515 GLY516 PRO517 PHE518 ARG519 VAL520 SER521 ASP522 LEU523 ALA524 GLY525 LEU526 ASP527 VAL528 GLY529 TRP530 LYS531 ILE532 ARG533 LYS534 GLY535 GLN536 GLY537 LEU538 THR539 GLY540 PRO541 SER542 LEU543 PRO544 PRO545 GLY546 THR547 PRO548 VAL549 ARG550 LYS551 ARG552 GLY553 ASN554 SER555 ARG556 TYR557 SER558 PRO559 LEU560 GLY561 ASP562 MET563 LEU564 CYS565 GLU566 ALA567 GLY568 ARG569 PHE570 GLY571 GLN572 LYS573 THR574 GLY575 LYS576 GLY577 TRP578 TYR579 GLN580 TYR581 ASP582 LYS583 PRO584 LEU585 GLY586 ARG587 ILE588 HIS589 LYS590 PRO591 ASP592 PRO593 TRP594 LEU595 SER596 THR597 PHE598 LEU599 SER600 GLN601 TYR602 ARG603 GLU604 VAL605 HIS606 HIS607 ILE608 GLU609 GLN610 ARG611 THR612 ILE613 SER614 LYS615 GLU616 GLU617 ILE618 LEU619 GLU620 ARG621 CYS622 LEU623 TYR624 SER625 LEU626 ILE627 ASN628 GLU629 ALA630 PHE631 ARG632 ILE633 LEU634 GLU635 GLU636 GLY637 MET638 ALA639 ALA640 ARG641 PRO642 GLU643 HIS644 ILE645 ASP646 VAL647 ILE648 TYR649 LEU650 HIS651 GLY652 TYR653 GLY654 TRP655 PRO656 ARG657 HIS658 LYS659 GLY660 GLY661 PRO662 MET663 PHE664 TYR665 ALA666 ALA667 SER668 VAL669 GLY670 LEU671 PRO672 THR673 VAL674 LEU675 GLU676 LYS677 LEU678 GLN679 LYS680 TYR681 TYR682 ARG683 GLN684 ASN685 PRO686 ASP687 ILE688 PRO689 GLN690 LEU691 GLU692 PRO693 SER694 ASP695 TYR696 LEU697 ARG698 ARG699 LEU700 VAL701 ALA702 GLN703 GLY704 SER705 PRO706 PRO707 LEU708 LYS709 GLU710 TRP711 GLN712 SER713 LEU714 ALA715 GLY716 PRO717 HIS718 GLY719 SER720 |
Unit 2 | HIS0 MET1 ALA2 GLU3 TYR4 LEU5 ARG6 LEU7 PRO8 HIS9 SER10 LEU11 ALA12 MET13 ILE14 ARG15 LEU16 CYS17 ASN18 PRO19 PRO20 VAL21 ASN22 ALA23 VAL24 SER25 PRO26 THR27 VAL28 ILE29 ARG30 GLU31 VAL32 ARG33 ASN34 GLY35 LEU36 GLN37 LYS38 ALA39 GLY40 SER41 ASP42 HIS43 THR44 VAL45 LYS46 ALA47 ILE48 VAL49 ILE50 CYS51 GLY52 ALA53 ASN54 GLY55 ASN56 PHE57 CYS58 ALA59 GLY60 ALA61 ASP62 ILE63 HIS64 GLY65 PHE66 SER67 ALA68 PHE69 THR70 PRO71 GLY72 LEU73 ALA74 LEU75 GLY76 SER77 LEU78 VAL79 ASP80 GLU81 ILE82 GLN83 ARG84 TYR85 GLN86 LYS87 PRO88 VAL89 LEU90 ALA91 ALA92 ILE93 GLN94 GLY95 VAL96 ALA97 LEU98 GLY99 GLY100 GLY101 LEU102 GLU103 LEU104 ALA105 LEU106 GLY107 CYS108 HIS109 TYR110 ARG111 ILE112 ALA113 ASN114 ALA115 LYS116 ALA117 ARG118 VAL119 GLY120 LEU121 PRO122 GLU123 VAL124 THR125 LEU126 GLY127 ILE128 LEU129 PRO130 GLY131 ALA132 ARG133 GLY134 THR135 GLN136 LEU137 LEU138 PRO139 ARG140 VAL141 VAL142 GLY143 VAL144 PRO145 VAL146 ALA147 LEU148 ASP149 LEU150 ILE151 THR152 SER153 GLY154 LYS155 TYR156 LEU157 SER158 ALA159 ASP160 GLU161 ALA162 LEU163 ARG164 LEU165 GLY166 ILE167 LEU168 ASP169 ALA170 VAL171 VAL172 LYS173 SER174 ASP175 PRO176 VAL177 GLU178 GLU179 ALA180 ILE181 LYS182 PHE183 ALA184 GLN185 LYS186 ILE187 ILE188 ASP189 LYS190 PRO191 ILE192 GLU193 PRO194 ARG195 ARG196 ILE197 PHE198 ASN199 LYS200 PRO201 VAL202 PRO203 SER204 LEU205 PRO206 ASN207 MET208 ASP209 SER210 VAL211 PHE212 ALA213 GLU214 ALA215 ILE216 ALA217 LYS218 VAL219 ARG220 LYS221 GLN222 TYR223 PRO224 GLY225 VAL226 LEU227 ALA228 PRO229 GLU230 THR231 CYS232 VAL233 ARG234 SER235 ILE236 GLN237 ALA238 SER239 VAL240 LYS241 HIS242 PRO243 TYR244 GLU245 VAL246 GLY247 ILE248 LYS249 GLU250 GLU251 GLU252 LYS253 LEU254 PHE255 MET256 TYR257 LEU258 ARG259 ALA260 SER261 GLY262 GLN263 ALA264 LYS265 ALA266 LEU267 GLN268 TYR269 ALA270 PHE271 PHE272 ALA273 GLU274 LYS275 SER276 ALA277 ASN278 LYS279 TRP280 SER281 THR282 PRO283 SER284 GLY285 ALA286 SER287 TRP288 LYS289 THR290 ALA291 SER292 ALA293 GLN294 PRO295 VAL296 SER297 SER298 VAL299 GLY300 VAL301 LEU302 GLY303 LEU304 GLY305 THR306 MET307 GLY308 ARG309 GLY310 ILE311 ALA312 ILE313 SER314 PHE315 ALA316 ARG317 VAL318 GLY319 ILE320 SER321 VAL322 VAL323 ALA324 VAL325 GLU326 SER327 ASP328 PRO329 LYS330 GLN331 LEU332 ASP333 ALA334 ALA335 LYS336 LYS337 ILE338 ILE339 THR340 PHE341 THR342 LEU343 GLU344 LYS345 GLU346 ALA347 SER348 ARG349 ALA350 HIS351 GLN352 ASN353 GLY354 GLN355 ALA356 SER357 ALA358 LYS359 PRO360 LYS361 LEU362 ARG363 PHE364 SER365 SER366 SER367 THR368 LYS369 GLU370 LEU371 SER372 THR373 VAL374 ASP375 LEU376 VAL377 VAL378 GLU379 ALA380 VAL381 PHE382 GLU383 ASP384 MET385 ASN386 LEU387 LYS388 LYS389 LYS390 VAL391 PHE392 ALA393 GLU394 LEU395 SER396 ALA397 LEU398 CYS399 LYS400 PRO401 GLY402 ALA403 PHE404 LEU405 CYS406 THR407 ASN408 THR409 SER410 ALA411 LEU412 ASN413 VAL414 ASP415 ASP416 ILE417 ALA418 SER419 SER420 THR421 ASP422 ARG423 PRO424 GLN425 LEU426 VAL427 ILE428 GLY429 THR430 HIS431 PHE432 PHE433 SER434 PRO435 ALA436 HIS437 VAL438 MET439 ARG440 LEU441 LEU442 GLU443 VAL444 ILE445 PRO446 SER447 ARG448 TYR449 SER450 SER451 PRO452 THR453 THR454 ILE455 ALA456 THR457 VAL458 MET459 SER460 LEU461 SER462 LYS463 LYS464 ILE465 GLY466 LYS467 ILE468 GLY469 VAL470 VAL471 VAL472 GLY473 ASN474 CYS475 TYR476 GLY477 PHE478 VAL479 GLY480 ASN481 ARG482 MET483 LEU484 ALA485 PRO486 TYR487 TYR488 ASN489 GLN490 GLY491 PHE492 PHE493 LEU494 LEU495 GLU496 GLU497 GLY498 SER499 LYS500 PRO501 GLU502 ASP503 VAL504 ASP505 GLY506 VAL507 LEU508 GLU509 GLU510 PHE511 GLY512 PHE513 LYS514 MET515 GLY516 PRO517 PHE518 ARG519 VAL520 SER521 ASP522 LEU523 ALA524 GLY525 LEU526 ASP527 VAL528 GLY529 TRP530 LYS531 ILE532 ARG533 LYS534 GLY535 GLN536 GLY537 LEU538 THR539 GLY540 PRO541 SER542 LEU543 PRO544 PRO545 GLY546 THR547 PRO548 VAL549 ARG550 LYS551 ARG552 GLY553 ASN554 SER555 ARG556 TYR557 SER558 PRO559 LEU560 GLY561 ASP562 MET563 LEU564 CYS565 GLU566 ALA567 GLY568 ARG569 PHE570 GLY571 GLN572 LYS573 THR574 GLY575 LYS576 GLY577 TRP578 TYR579 GLN580 TYR581 ASP582 LYS583 PRO584 LEU585 GLY586 ARG587 ILE588 HIS589 LYS590 PRO591 ASP592 PRO593 TRP594 LEU595 SER596 THR597 PHE598 LEU599 SER600 GLN601 TYR602 ARG603 GLU604 VAL605 HIS606 HIS607 ILE608 GLU609 GLN610 ARG611 THR612 ILE613 SER614 LYS615 GLU616 GLU617 ILE618 LEU619 GLU620 ARG621 CYS622 LEU623 TYR624 SER625 LEU626 ILE627 ASN628 GLU629 ALA630 PHE631 ARG632 ILE633 LEU634 GLU635 GLU636 GLY637 MET638 ALA639 ALA640 ARG641 PRO642 GLU643 HIS644 ILE645 ASP646 VAL647 ILE648 TYR649 LEU650 HIS651 GLY652 TYR653 GLY654 TRP655 PRO656 ARG657 HIS658 LYS659 GLY660 GLY661 PRO662 MET663 PHE664 TYR665 ALA666 ALA667 SER668 VAL669 GLY670 LEU671 PRO672 THR673 VAL674 LEU675 GLU676 LYS677 LEU678 GLN679 LYS680 TYR681 TYR682 ARG683 GLN684 ASN685 PRO686 ASP687 ILE688 PRO689 GLN690 LEU691 GLU692 PRO693 SER694 ASP695 TYR696 LEU697 ARG698 ARG699 LEU700 VAL701 ALA702 GLN703 GLY704 SER705 PRO706 PRO707 LEU708 LYS709 GLU710 TRP711 GLN712 SER713 LEU714 ALA715 GLY716 PRO717 HIS718 |
Unit 3 | NAD1721 T1G1722 SO41723 |
Unit 4 | NAD1719 SO41720 T1G1721 SO41722 |
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |