3ZVK - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF VAPBC2 FROM RICKETTSIA FELIS BOUND TO A DNA FRAGMENT FROM THEIR PROMOTER
• Keywords: ANTITOXIN-TOXIN-DNA COMPLEX, PROTEIN-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3ZVK	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	TOXIN OF TOXIN-ANTITOXIN SYSTEM	A	134	1062	0
2	Protein	TOXIN OF TOXIN-ANTITOXIN SYSTEM	B	133	1024	0
3	Protein	TOXIN OF TOXIN-ANTITOXIN SYSTEM	C	132	1037	0
4	Protein	TOXIN OF TOXIN-ANTITOXIN SYSTEM	D	132	1021	0
5	Protein	ANTITOXIN OF TOXIN-ANTITOXIN SYSTEM VAPB	E	57	443	0
6	Protein	ANTITOXIN OF TOXIN-ANTITOXIN SYSTEM VAPB	F	78	618	0
7	Protein	ANTITOXIN OF TOXIN-ANTITOXIN SYSTEM VAPB	G	77	612	0
8	Protein	ANTITOXIN OF TOXIN-ANTITOXIN SYSTEM VAPB	H	57	441	0
9	Other macromolecule	DNA	X	26	536	0
10	Other macromolecule	DNA	Y	26	527	0
11	Ligand	ANTITOXIN OF TOXIN-ANTITOXIN SYSTEM VAPB	E	1	0	12
12	Ligand	ANTITOXIN OF TOXIN-ANTITOXIN SYSTEM VAPB	F	1	0	12
13	Ligand	ANTITOXIN OF TOXIN-ANTITOXIN SYSTEM VAPB	G	1	0	12
14	Ligand	ANTITOXIN OF TOXIN-ANTITOXIN SYSTEM VAPB	H	1	0	12
15	Water			356	0	356
total				1212	7321	404

Proteins

Unit 1	MET 1 ILE 2 TYR 3 MET 4 LEU 5 GLY 6 THR 7 ASN 8 ILE 9 CYS 10 VAL 11 TYR 12 ALA 13 ILE 14 ASN 15 LYS 16 HIS 17 PRO 18 ASP 19 SER 20 TYR 21 TYR 22 ASN 23 ASN 24 LEU 25 GLU 26 LEU 27 LEU 28 ALA 29 LYS 30 ASN 31 ASN 32 THR 33 ILE 34 ALA 35 ILE 36 SER 37 SER 38 ILE 39 VAL 40 LEU 41 ALA 42 GLU 43 LEU 44 GLN 45 TYR 46 GLY 47 VAL 48 SER 49 LYS 50 SER 51 LYS 52 LYS 53 LYS 54 GLU 55 GLN 56 ASN 57 GLN 58 SER 59 LYS 60 LEU 61 ASP 62 ILE 63 PHE 64 LEU 65 SER 66 ARG 67 LEU 68 GLU 69 ILE 70 ILE 71 ASP 72 PHE 73 SER 74 ALA 75 LYS 76 CYS 77 THR 78 PHE 79 TYR 80 TYR 81 GLY 82 GLU 83 LEU 84 ARG 85 THR 86 GLU 87 LEU 88 GLU 89 GLN 90 LYS 91 GLY 92 LEU 93 ILE 94 ILE 95 GLY 96 ASN 97 ASN 98 ASP 99 LEU 100 LEU 101 ILE 102 ALA 103 SER 104 HIS 105 ALA 106 ILE 107 ALA 108 GLU 109 ASN 110 ALA 111 THR 112 LEU 113 VAL 114 THR 115 ASN 116 ASN 117 ILE 118 LYS 119 GLU 120 PHE 121 LYS 122 ARG 123 ILE 124 PRO 125 ASN 126 LEU 127 ILE 128 LEU 129 GLU 130 ASN 131 TRP 132 ASP 133 LYS 134
Unit 2	MET 1 ILE 2 TYR 3 MET 4 LEU 5 GLY 6 THR 7 ASN 8 ILE 9 CYS 10 VAL 11 TYR 12 ALA 13 ILE 14 ASN 15 LYS 16 HIS 17 PRO 18 ASP 19 SER 20 TYR 21 TYR 22 ASN 23 ASN 24 LEU 25 GLU 26 LEU 27 LEU 28 ALA 29 LYS 30 ASN 31 ASN 32 THR 33 ILE 34 ALA 35 ILE 36 SER 37 SER 38 ILE 39 VAL 40 LEU 41 ALA 42 GLU 43 LEU 44 GLN 45 TYR 46 GLY 47 VAL 48 SER 49 LYS 50 SER 51 LYS 52 LYS 53 LYS 54 GLU 55 GLN 56 ASN 57 GLN 58 SER 59 LYS 60 LEU 61 ASP 62 ILE 63 PHE 64 LEU 65 SER 66 ARG 67 LEU 68 GLU 69 ILE 70 ILE 71 ASP 72 PHE 73 SER 74 ALA 75 LYS 76 CYS 77 THR 78 PHE 79 TYR 80 TYR 81 GLY 82 GLU 83 LEU 84 ARG 85 THR 86 GLU 87 LEU 88 GLU 89 GLN 90 LYS 91 GLY 92 LEU 93 ILE 94 ILE 95 GLY 96 ASN 97 ASN 98 ASP 99 LEU 100 LEU 101 ILE 102 ALA 103 SER 104 HIS 105 ALA 106 ILE 107 ALA 108 GLU 109 ASN 110 ALA 111 THR 112 LEU 113 VAL 114 THR 115 ASN 116 ASN 117 ILE 118 LYS 119 GLU 120 PHE 121 LYS 122 ARG 123 ILE 124 PRO 125 ASN 126 LEU 127 ILE 128 LEU 129 GLU 130 ASN 131 TRP 132 ASP 133
Unit 3	MET 1 ILE 2 TYR 3 MET 4 LEU 5 GLY 6 THR 7 ASN 8 ILE 9 CYS 10 VAL 11 TYR 12 ALA 13 ILE 14 ASN 15 LYS 16 HIS 17 PRO 18 ASP 19 SER 20 TYR 21 TYR 22 ASN 23 ASN 24 LEU 25 GLU 26 LEU 27 LEU 28 ALA 29 LYS 30 ASN 31 ASN 32 THR 33 ILE 34 ALA 35 ILE 36 SER 37 SER 38 ILE 39 VAL 40 LEU 41 ALA 42 GLU 43 LEU 44 GLN 45 TYR 46 GLY 47 VAL 48 SER 49 LYS 50 SER 51 LYS 52 LYS 53 LYS 54 GLU 55 GLN 56 ASN 57 GLN 58 SER 59 LYS 60 LEU 61 ASP 62 ILE 63 PHE 64 LEU 65 SER 66 ARG 67 LEU 68 GLU 69 ILE 70 ILE 71 ASP 72 PHE 73 SER 74 ALA 75 LYS 76 CYS 77 THR 78 PHE 79 TYR 80 TYR 81 GLY 82 GLU 83 LEU 84 ARG 85 THR 86 GLU 87 LEU 88 GLU 89 GLN 90 LYS 91 GLY 92 LEU 93 ILE 94 ILE 95 GLY 96 ASN 97 ASN 98 ASP 99 LEU 100 LEU 101 ILE 102 ALA 103 SER 104 HIS 105 ALA 106 ILE 107 ALA 108 GLU 109 ASN 110 ALA 111 THR 112 LEU 113 VAL 114 THR 115 ASN 116 ASN 117 ILE 118 LYS 119 PHE 121 LYS 122 ARG 123 ILE 124 PRO 125 ASN 126 LEU 127 ILE 128 LEU 129 GLU 130 ASN 131 TRP 132 ASP 133
Unit 4	MET 1 ILE 2 TYR 3 MET 4 LEU 5 GLY 6 THR 7 ASN 8 ILE 9 CYS 10 VAL 11 TYR 12 ALA 13 ILE 14 ASN 15 LYS 16 HIS 17 PRO 18 ASP 19 SER 20 TYR 21 TYR 22 ASN 23 ASN 24 LEU 25 GLU 26 LEU 27 LEU 28 ALA 29 LYS 30 ASN 31 ASN 32 THR 33 ILE 34 ALA 35 ILE 36 SER 37 SER 38 ILE 39 VAL 40 LEU 41 ALA 42 GLU 43 LEU 44 GLN 45 TYR 46 GLY 47 VAL 48 SER 49 LYS 50 SER 51 LYS 52 LYS 53 LYS 54 GLU 55 GLN 56 ASN 57 GLN 58 SER 59 LYS 60 LEU 61 ASP 62 ILE 63 PHE 64 LEU 65 SER 66 ARG 67 LEU 68 GLU 69 ILE 70 ILE 71 ASP 72 PHE 73 SER 74 ALA 75 LYS 76 CYS 77 THR 78 PHE 79 TYR 80 TYR 81 GLY 82 GLU 83 LEU 84 ARG 85 THR 86 GLU 87 LEU 88 GLU 89 GLN 90 LYS 91 GLY 92 LEU 93 ILE 94 ILE 95 GLY 96 ASN 97 ASN 98 ASP 99 LEU 100 LEU 101 ILE 102 ALA 103 SER 104 HIS 105 ALA 106 ILE 107 ALA 108 GLU 109 ASN 110 ALA 111 THR 112 LEU 113 VAL 114 THR 115 ASN 116 ASN 117 ILE 118 LYS 119 PHE 121 LYS 122 ARG 123 ILE 124 PRO 125 ASN 126 LEU 127 ILE 128 LEU 129 GLU 130 ASN 131 TRP 132 ASP 133
Unit 5	ASN 2 LYS 3 ALA 4 LYS 5 ILE 6 PHE 7 MET 8 ASN 9 GLY 10 GLN 11 SER 12 GLN 13 ALA 14 VAL 15 ARG 16 LEU 17 PRO 18 LYS 19 GLU 20 PHE 21 ARG 22 PHE 23 SER 24 VAL 25 LYS 26 GLU 27 VAL 28 SER 29 VAL 30 ILE 31 PRO 32 LEU 33 GLY 34 LYS 35 GLY 36 ILE 37 VAL 38 LEU 39 GLN 40 PRO 41 LEU 42 PRO 43 ASN 44 SER 45 TRP 46 LYS 47 ASP 48 VAL 49 PHE 50 GLN 51 GLU 52 MET 53 ALA 54 GLU 55 ILE 56 SER 57 SER 58
Unit 6	MET 1 ASN 2 LYS 3 ALA 4 LYS 5 ILE 6 PHE 7 MET 8 ASN 9 GLY 10 GLN 11 SER 12 GLN 13 ALA 14 VAL 15 ARG 16 LEU 17 PRO 18 LYS 19 GLU 20 PHE 21 ARG 22 PHE 23 SER 24 VAL 25 LYS 26 GLU 27 VAL 28 SER 29 VAL 30 ILE 31 PRO 32 LEU 33 GLY 34 LYS 35 GLY 36 ILE 37 VAL 38 LEU 39 GLN 40 PRO 41 LEU 42 PRO 43 ASN 44 SER 45 TRP 46 LYS 47 ASP 48 VAL 49 PHE 50 GLN 51 GLU 52 MET 53 ALA 54 GLU 55 ILE 56 SER 57 SER 58 ASP 59 ASP 60 ILE 61 PHE 62 PRO 63 GLU 64 GLY 65 ARG 66 LYS 67 ASP 68 LEU 69 PRO 70 PRO 71 GLN 72 LYS 73 ARG 74 LYS 75 TYR 76 PHE 77 GLU 78
Unit 7	ASN 2 LYS 3 ALA 4 LYS 5 ILE 6 PHE 7 MET 8 ASN 9 GLY 10 GLN 11 SER 12 GLN 13 ALA 14 VAL 15 ARG 16 LEU 17 PRO 18 LYS 19 GLU 20 PHE 21 ARG 22 PHE 23 SER 24 VAL 25 LYS 26 GLU 27 VAL 28 SER 29 VAL 30 ILE 31 PRO 32 LEU 33 GLY 34 LYS 35 GLY 36 ILE 37 VAL 38 LEU 39 GLN 40 PRO 41 LEU 42 PRO 43 ASN 44 SER 45 TRP 46 LYS 47 ASP 48 VAL 49 PHE 50 GLN 51 GLU 52 MET 53 ALA 54 GLU 55 ILE 56 SER 57 SER 58 ASP 59 ASP 60 ILE 61 PHE 62 PRO 63 GLU 64 GLY 65 ARG 66 LYS 67 ASP 68 LEU 69 PRO 70 PRO 71 GLN 72 LYS 73 ARG 74 LYS 75 TYR 76 PHE 77 GLU 78
Unit 8	MET 1 ASN 2 LYS 3 ALA 4 LYS 5 ILE 6 PHE 7 MET 8 ASN 9 GLY 10 GLN 11 SER 12 GLN 13 ALA 14 VAL 15 ARG 16 LEU 17 PRO 18 LYS 19 GLU 20 PHE 21 ARG 22 PHE 23 SER 24 VAL 25 LYS 26 GLU 27 VAL 28 SER 29 VAL 30 ILE 31 PRO 32 LEU 33 GLY 34 LYS 35 GLY 36 ILE 37 VAL 38 LEU 39 GLN 40 PRO 41 LEU 42 PRO 43 ASN 44 SER 45 TRP 46 LYS 47 ASP 48 VAL 49 PHE 50 GLN 51 GLU 52 MET 53 ALA 54 GLU 55 ILE 56 SER 57

Other macromolecules

Unit 9	DA 2 DG 3 DT 4 DA 5 DT 6 DA 7 DT 8 DA 9 DT 10 DT 11 DA 12 DA 13 DT 14 DT 15 DA 16 DG 17 DT 18 DA 19 DT 20 DA 21 DT 22 DA 23 DT 24 DT 25 DA 26 DA 27
Unit 10	DT 1 DT 2 DA 3 DA 4 DT 5 DA 6 DT 7 DA 8 DT 9 DA 10 DC 11 DT 12 DA 13 DA 14 DT 15 DT 16 DA 17 DA 18 DT 19 DA 20 DT 21 DA 22 DT 23 DA 24 DC 25 DT 26

Ligands

Unit 11	MES 1059
Unit 12	MES 1079
Unit 13	MES 1079
Unit 14	MES 1058