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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURAL BASIS OF SIGNAL SEQUENCE SURVEILLANCE AND SELECTI SRP-SR COMPLEX
Keywords PROTEIN TRANSPORT, HYDROLASE
Experiment ELECTRON MICROSCOPY
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3ZN8     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SIGNAL RECOGNITION PARTICLE PROTEIN  A 288 2215 0
2  Protein   SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY  D 295 2261 0
3  RNA    G 88 1886 0
4  Protein   SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN  M 106 861 0
5  Protein   DIPEPTIDYL AMINOPEPTIDASE B  S 14 108 0
6  Ligand   SIGNAL RECOGNITION PARTICLE PROTEIN  A 1 0 1
7 Water     121 0 121
total       913 7331 122

Proteins
Unit 1 PHE2 GLN3 GLN4 LEU5 SER6 ALA7 ARG8 LEU9 GLN10 GLU11 ALA12 ILE13 GLY14 ARG15 LEU16 ARG17 GLY18 ARG19 GLY20 ARG21 ILE22 THR23 GLU24 GLU25 ASP26 LEU27 LYS28 ALA29 THR30 LEU31 ARG32 GLU33 ILE34 ARG35 ARG36 ALA37 LEU38 MET39 ASP40 ALA41 ASP42 VAL43 ASN44 LEU45 GLU46 VAL47 THR48 ARG49 ASP50 PHE51 VAL52 GLU53 ARG54 VAL55 ARG56 GLU57 GLU58 ALA59 LEU60 GLY61 LYS62 GLN63 VAL64 LEU65 GLU66 SER67 LEU68 THR69 PRO70 ALA71 GLU72 VAL73 ILE74 LEU75 ALA76 THR77 VAL78 TYR79 GLU80 ALA81 LEU82 LYS83 GLU84 ALA85 LEU86 GLY87 GLY88 GLU89 ALA90 ARG91 LEU92 PRO93 VAL94 LEU95 LYS96 ASP97 ARG98 ASN99 LEU100 TRP101 PHE102 LEU103 VAL104 GLY105 LEU106 GLN107 GLY108 SER109 GLY110 LYS111 THR112 THR113 THR114 ALA115 ALA116 LYS117 LEU118 ALA119 LEU120 TYR121 TYR122 LYS123 GLY124 LYS125 GLY126 ARG127 ARG128 PRO129 LEU130 LEU131 VAL132 ALA133 ALA134 ASP135 THR136 GLN137 ARG138 PRO139 ALA140 ALA141 ARG142 GLU143 GLN144 LEU145 ARG146 LEU147 LEU148 GLY149 GLU150 LYS151 VAL152 GLY153 VAL154 PRO155 VAL156 LEU157 GLU158 VAL159 MET160 ASP161 GLY162 GLU163 SER164 PRO165 GLU166 SER167 ILE168 ARG169 ARG170 ARG171 VAL172 GLU173 GLU174 LYS175 ALA176 ARG177 LEU178 GLU179 ALA180 ARG181 ASP182 LEU183 ILE184 LEU185 VAL186 ASP187 THR188 ALA189 GLY190 ARG191 LEU192 GLN193 ILE194 ASP195 GLU196 PRO197 LEU198 MET199 GLY200 GLU201 LEU202 ALA203 ARG204 LEU205 LYS206 GLU207 VAL208 LEU209 GLY210 PRO211 ASP212 GLU213 VAL214 LEU215 LEU216 VAL217 LEU218 ASP219 ALA220 MET221 THR222 GLY223 GLN224 GLU225 ALA226 LEU227 SER228 VAL229 ALA230 ARG231 ALA232 PHE233 ASP234 GLU235 LYS236 VAL237 GLY238 VAL239 THR240 GLY241 LEU242 VAL243 LEU244 THR245 LYS246 LEU247 ASP248 GLY249 ASP250 ALA251 ARG252 GLY253 GLY254 ALA255 ALA256 LEU257 SER258 ALA259 ARG260 HIS261 VAL262 THR263 GLY264 LYS265 PRO266 ILE267 TYR268 PHE269 ALA270 GLY271 VAL272 LEU279 GLU280 PRO281 PHE282 TYR283 PRO284 GLU285 ARG286 LEU287 ALA288 GLY289 ARG290 ILE291 LEU292 GLY293 MET294 GLY295
Unit 2 ARG201 SER202 LEU203 LEU204 LYS205 THR206 LYS207 GLU208 ASN209 LEU210 GLY211 SER212 GLY213 PHE214 ILE215 SER216 LEU217 PHE218 ARG219 GLY220 LYS221 LYS222 ILE223 ASP224 ASP225 ASP226 LEU227 PHE228 GLU229 GLU230 LEU231 GLU232 GLU233 GLN234 LEU235 LEU236 ILE237 ALA238 ASP239 VAL240 GLY241 VAL242 GLU243 THR244 THR245 ARG246 LYS247 ILE248 ILE249 THR250 ASN251 LEU252 THR253 GLU254 GLY255 ALA256 SER257 ARG258 LYS259 GLN260 LEU261 ARG262 ASP263 ALA264 GLU265 ALA266 LEU267 TYR268 GLY269 LEU270 LEU271 LYS272 GLU273 GLU274 MET275 GLY276 GLU277 ILE278 LEU279 ALA280 LYS281 VAL282 ASP283 GLU284 PRO285 LEU286 ASN287 VAL288 GLU289 GLY290 LYS291 ALA292 PRO293 PHE294 VAL295 ILE296 LEU297 MET298 VAL299 GLY300 VAL301 ASN302 GLY303 VAL304 GLY305 LYS306 THR307 THR308 THR309 ILE310 GLY311 LYS312 LEU313 ALA314 ARG315 GLN316 PHE317 GLU318 GLN319 GLN320 GLY321 LYS322 SER323 VAL324 MET325 LEU326 ALA327 ALA328 GLY329 ASP330 THR331 PHE332 ARG333 ALA334 ALA335 ALA336 VAL337 GLU338 GLN339 LEU340 GLN341 VAL342 TRP343 GLY344 GLN345 ARG346 ASN347 ASN348 ILE349 PRO350 VAL351 ILE352 ALA353 GLN354 HIS355 THR356 GLY357 ALA358 ASP359 SER360 ALA361 SER362 VAL363 ILE364 PHE365 ASP366 ALA367 ILE368 GLN369 ALA370 ALA371 LYS372 ALA373 ARG374 ASN375 ILE376 ASP377 VAL378 LEU379 ILE380 ALA381 ASP382 THR383 ALA384 GLY385 ARG386 LEU387 GLN388 ASN389 LYS390 SER391 HIS392 LEU393 MET394 GLU395 GLU396 LEU397 LYS398 LYS399 ILE400 VAL401 ARG402 VAL403 MET404 LYS405 LYS406 LEU407 ASP408 VAL409 GLU410 ALA411 PRO412 HIS413 GLU414 VAL415 MET416 LEU417 THR418 ILE419 ASP420 ALA421 SER422 THR423 GLY424 GLN425 ASN426 ALA427 VAL428 SER429 GLN430 ALA431 LYS432 LEU433 PHE434 HIS435 GLU436 ALA437 VAL438 GLY439 LEU440 THR441 GLY442 ILE443 THR444 LEU445 THR446 LYS447 LEU448 ASP449 GLY450 THR451 ALA452 LYS453 GLY454 GLY455 VAL456 ILE457 PHE458 SER459 VAL460 ALA461 ASP462 GLN463 PHE464 GLY465 ILE466 PRO467 ILE468 ARG469 TYR470 ILE471 GLY472 VAL473 GLY474 GLU475 ARG476 ILE477 GLU478 ASP479 LEU480 ARG481 PRO482 PHE483 LYS484 ALA485 ASP486 ASP487 PHE488 ILE489 GLU490 ALA491 LEU492 PHE493 ALA494 ARG495
Unit 4 LEU307 LEU327 THR328 LEU329 ARG330 ASP331 VAL332 TYR333 ALA334 GLN335 ILE336 ILE337 ALA338 LEU339 ARG340 LYS341 MET342 GLY343 PRO344 LEU345 SER346 LYS347 VAL348 LEU349 GLN350 HIS351 ILE352 PRO353 GLY354 LEU355 GLY356 ILE357 MET358 LEU359 PRO360 THR361 PRO362 SER363 GLU364 ASP365 GLN366 LEU367 LYS368 ILE369 GLY370 GLU371 GLU372 LYS373 ILE374 ARG375 ARG376 TRP377 LEU378 ALA379 ALA380 LEU381 ASN382 SER383 MET384 THR385 TYR386 LYS387 GLU388 LEU389 GLU390 ASN391 PRO392 ASN393 ILE394 ILE395 ASP396 LYS397 SER398 ARG399 MET400 ARG401 ARG402 ILE403 ALA404 GLU405 GLY406 SER407 GLY408 LEU409 GLU410 VAL411 GLU412 GLU413 VAL414 ARG415 GLU416 LEU417 LEU418 GLU419 TRP420 TYR421 ASN422 ASN423 MET424 ASN425 ARG426 LEU427 LEU428 LYS429 MET430 VAL431
Unit 5 GLY449 ILE450 ILE451 LEU452 VAL453 LEU454 LEU455 ILE456 TRP457 GLY458 THR459 VAL460 LEU461 LEU462

Nucleic acids
Unit 3 U8 G9 G10 U11 G12 C13 A14 G15 C16 G17 C18 A19 G20 C21 G22 C23 G24 G25 A26 C27 G28 C29 C30 C31 G32 A33 A34 C35 C36 U37 G38 G39 U40 C41 A42 G43 A44 G45 C46 C47 G48 G49 A50 A51 G52 G53 C54 A55 G56 C57 A58 G59 C60 C61 A62 U63 A64 A65 G66 G67 G68 A69 U70 G71 C72 U73 U74 U75 G76 C77 G78 G79 G80 U81 G82 C83 C84 G85 U86 U87 G88 C89 C90 U91 U92 C93 C94 G95

Ligands
Unit 6 MG1296

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany