3ZE7 - Sequence, Chains, Asymmetric and Biological Units

• Title: 3D STRUCTURE OF THE NI-FE-SE HYDROGENASE FROM D. VULGARIS HILDENBOROUGH IN THE REDUCED STATE AT 1.95 ANGSTROMS
• Keywords: OXIDOREDUCTASE, HYDROGENASE BIOHYDROGEN OXYGEN TOLERANCE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3ZE7	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PERIPLASMIC [NIFESE] HYDROGENASE, SMALL SUBUNITPERIPLASMIC [NIFESE] HYDROGENASE, LARGE SUBUNIT, SELENOCYSTEINE-CONTAINING	A	277	2082	0
2	Protein	PERIPLASMIC [NIFESE] HYDROGENASE, SMALL SUBUNITPERIPLASMIC [NIFESE] HYDROGENASE, LARGE SUBUNIT, SELENOCYSTEINE-CONTAINING	B	481	3728	8
3	Ligand	PERIPLASMIC [NIFESE] HYDROGENASE, SMALL SUBUNITPERIPLASMIC [NIFESE] HYDROGENASE, LARGE SUBUNIT, SELENOCYSTEINE-CONTAINING	A	3	0	24
4	Ligand	PERIPLASMIC [NIFESE] HYDROGENASE, SMALL SUBUNITPERIPLASMIC [NIFESE] HYDROGENASE, LARGE SUBUNIT, SELENOCYSTEINE-CONTAINING	B	4	0	10
5	Water			734	0	734
total				1499	5810	776

Proteins

Unit 1

ARG 7 PRO 8 PRO 9 VAL 10 PHE 11 TRP 12 LEU 13 GLN 14 GLY 15 GLN 16 GLY 17 CYS 18 THR 19 GLY 20 CYS 21 SER 22 VAL 23 THR 24 LEU 25 LEU 26 ASN 27 SER 28 VAL 29 HIS 30 PRO 31 SER 32 ILE 33 ALA 34 ASP 35 VAL 36 LEU 37 LEU 38 LYS 39 VAL 40 ILE 41 SER 42 LEU 43 GLU 44 PHE 45 HIS 46 PRO 47 THR 48 VAL 49 MET 50 ALA 51 TRP 52 GLU 53 GLY 54 GLU 55 HIS 56 ALA 57 ILE 58 GLU 59 HIS 60 MET 61 ARG 62 LYS 63 VAL 64 ALA 65 GLU 66 LYS 67 PHE 68 LYS 69 GLY 70 LYS 71 PHE 72 PHE 73 LEU 74 VAL 75 ILE 76 GLU 77 GLY 78 SER 79 VAL 80 PRO 81 VAL 82 GLU 83 ALA 84 ASP 85 GLY 86 LYS 87 TYR 88 CYS 89 ILE 90 ILE 91 GLY 92 GLU 93 ALA 94 ASN 95 HIS 96 HIS 97 GLU 98 ILE 99 SER 100 MET 101 VAL 102 ASP 103 ALA 104 LEU 105 LYS 106 GLU 107 PHE 108 GLY 109 PRO 110 ASN 111 ALA 112 ALA 113 ALA 114 VAL 115 LEU 116 ALA 117 VAL 118 GLY 119 THR 120 CYS 121 ALA 122 ALA 123 TYR 124 GLY 125 GLY 126 ILE 127 PRO 128 ALA 129 ALA 130 GLU 131 GLY 132 SER 133 GLU 134 THR 135 GLY 136 ALA 137 THR 138 ALA 139 VAL 140 SER 141 LYS 142 PHE 143 LEU 144 GLY 145 ASP 146 ASN 147 GLY 148 ILE 149 LYS 150 THR 151 PRO 152 VAL 153 VAL 154 ASN 155 ILE 156 PRO 157 GLY 158 CYS 159 PRO 160 PRO 161 HIS 162 PRO 163 ASP 164 TRP 165 ILE 166 VAL 167 GLY 168 THR 169 VAL 170 VAL 171 LEU 172 ALA 173 LEU 174 ASP 175 ALA 176 ILE 177 LYS 178 LYS 179 ASN 180 GLY 181 LEU 182 GLU 183 GLY 184 GLY 185 LEU 186 ALA 187 GLU 188 VAL 189 VAL 190 LYS 191 VAL 192 LEU 193 ASP 194 SER 195 ASP 196 GLY 197 ARG 198 PRO 199 THR 200 PRO 201 PHE 202 PHE 203 GLY 204 ARG 205 ASN 206 ILE 207 HIS 208 GLU 209 ASN 210 CYS 211 PRO 212 TYR 213 LEU 214 ASP 215 LYS 216 TYR 217 ASP 218 GLU 219 GLY 220 VAL 221 MET 222 SER 223 ALA 224 THR 225 PHE 226 THR 227 ASP 228 LYS 229 VAL 230 GLY 231 CYS 232 ARG 233 TYR 234 ASP 235 LEU 236 GLY 237 CYS 238 LYS 239 GLY 240 PRO 241 MET 242 THR 243 MET 244 ALA 245 ASP 246 CYS 247 PHE 248 GLU 249 ARG 250 LYS 251 TRP 252 ASN 253 GLY 254 GLY 255 VAL 256 ASN 257 TRP 258 CYS 259 VAL 260 GLN 261 ASN 262 ALA 263 VAL 264 CYS 265 ILE 266 GLY 267 CYS 268 VAL 269 GLU 270 PRO 271 ASP 272 PHE 273 PRO 274 ASP 275 GLY 276 LYS 277 SER 278 PRO 279 PHE 280 TYR 281 GLN 282 ALA 283

Unit 2

GLY 15 ARG 16 THR 17 THR 18 ILE 19 ALA 20 ILE 21 ASP 22 PRO 23 VAL 24 THR 25 ARG 26 ILE 27 GLU 28 GLY 29 HIS 30 LEU 31 LYS 32 ALA 33 GLU 34 VAL 35 VAL 36 VAL 37 GLU 38 ASN 39 GLY 40 LYS 41 VAL 42 VAL 43 ASP 44 ALA 45 ARG 46 LEU 47 SER 48 GLY 49 GLY 50 MET 51 TYR 52 ARG 53 GLY 54 PHE 55 GLU 56 THR 57 ILE 58 LEU 59 ARG 60 GLY 61 ARG 62 ASP 63 PRO 64 ARG 65 ASP 66 ALA 67 SER 68 GLN 69 ILE 70 VAL 71 GLN 72 ARG 73 ILE 74 OCS 75 GLY 76 VAL 77 CYS 78 PRO 79 THR 80 ALA 81 HIS 82 SER 83 THR 84 ALA 85 SER 86 VAL 87 LEU 88 ALA 89 LEU 90 ASP 91 GLU 92 ALA 93 PHE 94 GLY 95 ALA 96 LYS 97 VAL 98 PRO 99 ASN 100 ASN 101 GLY 102 ARG 103 ILE 104 THR 105 ARG 106 ASN 107 LEU 108 ILE 109 PHE 110 GLY 111 ALA 112 ASN 113 TYR 114 LEU 115 GLN 116 SER 117 HIS 118 ILE 119 LEU 120 HIS 121 PHE 122 TYR 123 HIS 124 LEU 125 SER 126 ALA 127 GLN 128 ASP 129 PHE 130 VAL 131 GLN 132 GLY 133 PRO 134 ASP 135 THR 136 ALA 137 PRO 138 PHE 139 VAL 140 PRO 141 ARG 142 PHE 143 PRO 144 LYS 145 SER 146 ASP 147 LEU 148 ARG 149 LEU 150 SER 151 LYS 152 GLU 153 LEU 154 ASN 155 LYS 156 ALA 157 GLY 158 VAL 159 ASP 160 GLN 161 TYR 162 ILE 163 GLU 164 ALA 165 LEU 166 GLU 167 VAL 168 ARG 169 ARG 170 ILE 171 CYS 172 HIS 173 GLU 174 MET 175 VAL 176 ALA 177 LEU 178 PHE 179 GLY 180 GLY 181 ARG 182 MET 183 PRO 184 HIS 185 VAL 186 GLN 187 GLY 188 GLN 189 VAL 190 VAL 191 GLY 192 GLY 193 ALA 194 THR 195 GLU 196 ILE 197 PRO 198 THR 199 LYS 200 GLU 201 LYS 202 LEU 203 VAL 204 GLU 205 TYR 206 ALA 207 ALA 208 ARG 209 PHE 210 LYS 211 LYS 212 VAL 213 ARG 214 ASP 215 PHE 216 VAL 217 GLU 218 GLN 219 LYS 220 TYR 221 VAL 222 PRO 223 VAL 224 VAL 225 TYR 226 THR 227 ILE 228 GLY 229 SER 230 LYS 231 TYR 232 LYS 233 ASP 234 MET 235 PHE 236 LYS 237 VAL 238 GLY 239 GLN 240 GLY 241 PHE 242 LYS 243 ALA 244 ALA 245 LEU 246 CYS 247 VAL 248 GLY 249 ALA 250 PHE 251 PRO 252 LEU 253 ASP 254 ASN 255 SER 256 GLY 257 LYS 258 LYS 259 HIS 260 LEU 261 PHE 262 MET 263 PRO 264 GLY 265 VAL 266 TYR 267 ALA 268 LYS 269 GLY 270 LYS 271 ASP 272 MET 273 PRO 274 PHE 275 ASP 276 PRO 277 SER 278 LYS 279 ILE 280 LYS 281 GLU 282 TYR 283 VAL 284 LYS 285 TYR 286 SER 287 TRP 288 PHE 289 ALA 290 GLU 291 GLU 292 THR 293 THR 294 GLY 295 LEU 296 ASN 297 TYR 298 LYS 299 GLU 300 GLY 301 LYS 302 THR 303 ILE 304 PRO 305 ALA 306 PRO 307 ASP 308 LYS 309 ALA 310 GLY 311 ALA 312 TYR 313 SER 314 PHE 315 VAL 316 LYS 317 ALA 318 PRO 319 ARG 320 TYR 321 ASP 322 GLY 323 LEU 324 SER 325 LEU 326 GLU 327 VAL 328 GLY 329 PRO 330 LEU 331 ALA 332 ARG 333 MET 334 TRP 335 VAL 336 ASN 337 ASN 338 PRO 339 GLU 340 LEU 341 SER 342 PRO 343 VAL 344 GLY 345 LYS 346 LYS 347 LEU 348 LEU 349 LYS 350 ASP 351 LEU 352 PHE 353 GLY 354 ILE 355 SER 356 ALA 357 LYS 358 LYS 359 PHE 360 ARG 361 ASP 362 LEU 363 GLY 364 GLU 365 GLU 366 ALA 367 ALA 368 PHE 369 SER 370 LEU 371 MET 372 GLY 373 ARG 374 HIS 375 VAL 376 ALA 377 ARG 378 ALA 379 GLU 380 GLU 381 THR 382 TYR 383 TYR 384 MET 385 LEU 386 GLY 387 ALA 388 ILE 389 GLU 390 GLY 391 TRP 392 LEU 393 LYS 394 GLU 395 ILE 396 LYS 397 ALA 398 GLY 399 GLU 400 ASP 401 THR 402 VAL 403 VAL 404 MET 405 PRO 406 ALA 407 VAL 408 PRO 409 ALA 410 SER 411 ALA 412 GLU 413 GLY 414 THR 415 GLY 416 PHE 417 THR 418 GLU 419 ALA 420 PRO 421 ARG 422 GLY 423 SER 424 LEU 425 LEU 426 HIS 427 TYR 428 VAL 429 LYS 430 VAL 431 LYS 432 ASP 433 SER 434 LYS 435 ILE 436 ASP 437 ASN 438 TYR 439 GLN 440 ILE 441 VAL 442 SER 443 ALA 444 SER 445 LEU 446 TRP 447 ASN 448 CYS 449 ASN 450 PRO 451 ARG 452 ASP 453 ASP 454 MET 455 GLY 456 GLN 457 ARG 458 GLY 459 ALA 460 VAL 461 GLU 462 GLU 463 ALA 464 LEU 465 ILE 466 GLY 467 ILE 468 PRO 469 VAL 470 ASP 471 ASP 472 ILE 473 GLN 474 ASN 475 PRO 476 VAL 477 ASN 478 VAL 479 ALA 480 ARG 481 LEU 482 ILE 483 ARG 484 ALA 485 PHE 486 ASP 487 PRO 488 SEC 489 LEU 490 GLY 491 CYS 492 ALA 493 VAL 494 HIS 495

Ligands

Unit 3	SF4 284 SF4 285 SF4 286
Unit 4	FCO 500 NI 501 FE2 502 H2S 503