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Sequence, Chains, Asymmetric and Biological Units

Title SNAPSHOT 1 OF RIG-I SCANNING ON RNA DUPLEX
Keywords HYDROLASE-RNA COMPLEX, INNATE IMMUNITY
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3ZD6     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PROBABLE ATP-DEPENDENT RNA HELICASE DDX58  A 632 4946 0
2  RNA    C 10 212 0
3  RNA    D 10 212 0
4  Ligand   PROBABLE ATP-DEPENDENT RNA HELICASE DDX58  A 1 0 1
5 Water     8 0 9
total       661 5370 10
Proteins
Unit 1 ASN236 LEU237 TYR238 SER239 PRO240 PHE241 LYS242 PRO243 ARG244 ASN245 TYR246 GLN247 LEU248 GLU249 LEU250 ALA251 LEU252 PRO253 ALA254 MET255 LYS256 GLY257 LYS258 ASN259 THR260 ILE261 ILE262 CYS263 ALA264 PRO265 THR266 GLY267 CYS268 GLY269 LYS270 THR271 PHE272 VAL273 SER274 LEU275 LEU276 ILE277 CYS278 GLU279 HIS280 HIS281 LEU282 LYS283 LYS284 PHE285 PRO286 ASN287 GLY288 GLN289 LYS290 GLY291 LYS292 VAL293 VAL294 PHE295 PHE296 ALA297 ASN298 GLN299 ILE300 PRO301 VAL302 TYR303 GLU304 GLN305 ASN306 LYS307 SER308 VAL309 PHE310 SER311 LYS312 TYR313 PHE314 GLU315 ARG316 HIS317 GLY318 TYR319 ARG320 VAL321 THR322 GLY323 ILE324 SER325 GLY326 ALA327 THR328 ALA329 GLU330 ASN331 VAL332 PRO333 VAL334 GLU335 GLN336 ILE337 VAL338 GLU339 ASN340 ASN341 ASP342 ILE343 ILE344 ILE345 LEU346 THR347 PRO348 GLN349 ILE350 LEU351 VAL352 ASN353 ASN354 LEU355 LYS356 LYS357 GLY358 THR359 ILE360 PRO361 SER362 LEU363 SER364 ILE365 PHE366 THR367 LEU368 MET369 ILE370 PHE371 ASP372 GLU373 CYS374 HIS375 ASN376 THR377 SER378 LYS379 GLN380 HIS381 PRO382 TYR383 ASN384 MET385 ILE386 MET387 PHE388 ASN389 TYR390 LEU391 ASP392 GLN393 LYS394 LEU395 GLY396 GLY397 SER398 SER399 GLY400 PRO401 LEU402 PRO403 GLN404 VAL405 ILE406 GLY407 LEU408 THR409 ALA410 SER411 VAL412 GLY413 VAL414 GLY415 ASP416 ALA417 LYS418 ASN419 THR420 ASP421 GLU422 ALA423 LEU424 ASP425 TYR426 ILE427 CYS428 LYS429 LEU430 CYS431 ALA432 SER433 LEU434 ASP435 ALA436 SER437 VAL438 ILE439 ALA440 THR441 VAL442 LYS443 HIS444 ASN445 LEU446 GLU447 GLU448 LEU449 GLU450 GLN451 VAL452 VAL453 TYR454 LYS455 PRO456 GLN457 LYS458 PHE459 PHE460 ARG461 LYS462 VAL463 GLU464 SER465 ARG466 ILE467 SER468 ASP469 LYS470 PHE471 LYS472 TYR473 ILE474 ILE475 ALA476 GLN477 LEU478 MET479 ARG480 ASP481 THR482 GLU483 SER484 LEU485 ALA486 LYS487 ARG488 ILE489 CYS490 LYS491 ASP492 LEU493 GLU494 ASN495 LEU496 SER497 GLN498 ILE499 GLN500 ASN501 ARG502 GLU503 PHE504 GLY505 THR506 GLN507 LYS508 TYR509 GLU510 GLN511 TRP512 ILE513 VAL514 THR515 VAL516 GLN517 LYS518 ALA519 CYS520 MET521 SER532 ARG533 ILE534 CYS535 LYS536 ALA537 LEU538 PHE539 LEU540 TYR541 THR542 SER543 HIS544 LEU545 ARG546 LYS547 TYR548 ASN549 ASP550 ALA551 LEU552 ILE553 ILE554 SER555 GLU556 HIS557 ALA558 ARG559 MET560 LYS561 ASP562 ALA563 LEU564 ASP565 TYR566 LEU567 LYS568 ASP569 PHE570 PHE571 SER572 ASN573 VAL574 ARG575 ALA576 ALA577 GLY578 PHE579 ASP580 GLU581 ILE582 GLU583 GLN584 ASP585 LEU586 THR587 GLN588 ARG589 PHE590 GLU591 GLU592 LYS593 LEU594 GLN595 GLU596 LEU597 GLU598 SER599 VAL600 SER601 ARG602 ASP603 PRO604 SER605 ASN606 GLU607 ASN608 PRO609 LYS610 LEU611 GLU612 ASP613 LEU614 CYS615 PHE616 ILE617 LEU618 GLN619 GLU620 GLU621 TYR622 HIS623 LEU624 ASN625 PRO626 GLU627 THR628 ILE629 THR630 ILE631 LEU632 PHE633 VAL634 LYS635 THR636 ARG637 ALA638 LEU639 VAL640 ASP641 ALA642 LEU643 LYS644 ASN645 TRP646 ILE647 GLU648 GLY649 ASN650 PRO651 LYS652 LEU653 SER654 PHE655 LEU656 LYS657 PRO658 GLY659 ILE660 LEU661 HIS691 ASN692 ILE693 LEU694 ILE695 LEU696 THR697 SER698 VAL699 ALA700 ASP701 ALA707 GLN708 CYS709 ASN710 LEU711 VAL712 ILE713 LEU714 TYR715 GLU716 TYR717 VAL718 GLY719 ASN720 VAL721 ILE722 ALA733 ARG734 GLY735 SER736 LYS737 CYS738 PHE739 LEU740 LEU741 THR742 SER743 ASN744 ALA745 GLY746 VAL747 ILE748 GLU749 LYS750 GLU751 GLN752 ILE753 ASN754 MET755 TYR756 LYS757 GLU758 LYS759 MET760 MET761 ASN762 ASP763 SER764 ILE765 LEU766 ARG767 LEU768 GLN769 THR770 TRP771 ASP772 GLU773 ALA774 VAL775 PHE776 ARG777 GLU778 LYS779 ILE780 LEU781 HIS782 ILE783 GLN784 THR785 HIS786 GLU787 LYS788 PHE789 ILE790 ARG791 ASP792 SER793 GLN794 GLU795 LYS796 PRO797 LYS798 PRO799 VAL800 PRO801 ASP802 LYS803 GLU804 ASN805 LYS806 LYS807 LEU808 LEU809 CYS810 ARG811 LYS812 CYS813 LYS814 ALA815 LEU816 ALA817 CYS818 TYR819 THR820 ALA821 ASP822 VAL823 ARG824 VAL825 ILE826 GLU827 GLU828 CYS829 HIS830 TYR831 THR832 VAL833 LEU834 GLY835 ASP836 ALA837 PHE838 LYS839 GLU840 CYS841 PHE842 VAL843 SER844 ARG845 PRO846 HIS847 PRO848 LYS849 PRO850 LYS851 GLN852 PHE853 SER854 SER855 PHE856 GLU857 LYS858 ARG859 ALA860 LYS861 ILE862 PHE863 CYS864 ALA865 ARG866 GLN867 ASN868 CYS869 SER870 HIS871 ASP872 TRP873 GLY874 ILE875 HIS876 VAL877 LYS878 TYR879 LYS880 THR881 PHE882 GLU883 ILE884 PRO885 VAL886 ILE887 LYS888 ILE889 GLU890 SER891 PHE892 VAL893 VAL894 GLU895 ASP896 ILE897 ALA898 THR899 GLY900 VAL901 GLN902 THR903 LEU904 TYR905 SER906 LYS907 TRP908 LYS909 ASP910 PHE911 HIS912 PHE913 GLU914 LYS915 ILE916 PRO917 PHE918 ASP919 PRO920 ALA921
Nucleic acids
Unit 2 G1 C2 G3 C4 G5 C6 G7 C8 G9 C10
Unit 3 G1 C2 G3 C4 G5 C6 G7 C8 G9 C10
Ligands
Unit 4 ZN927
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany