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Sequence, Chains, Asymmetric and Biological Units

Title TIME-RESOLVED CRYSTAL STRUCTURE OF HINDIII WITH 230SEC SOAKI
Keywords FREEZE-TRAP, TIME-RESOLVED, TYPE IIP RESTRICTION ENDONUCLEAS RESTRICTION ENDONUCLEASE, HYDROLASE, NUCLEASE, HYDROLASE-DN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3WVK     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TYPE-2 RESTRICTION ENZYME HINDIII  A 298 2452 0
2  Protein   TYPE-2 RESTRICTION ENZYME HINDIII  B 298 2452 0
3  Protein   TYPE-2 RESTRICTION ENZYME HINDIII  C 298 2452 0
4  Protein   TYPE-2 RESTRICTION ENZYME HINDIII  D 298 2452 0
5  Other macromolecule    M 12 243 0
6  Other macromolecule    N 12 243 0
7  Other macromolecule    O 12 243 0
8  Other macromolecule    P 12 243 0
9  Other macromolecule   DNA (5'-D(*GP*CP*CP*A)-3')  E 4 78 0
10  Other macromolecule   DNA (5'-D(P*AP*GP*CP*TP*TP*GP*GP*C)-3')  F 8 166 0
11  Other macromolecule   DNA (5'-D(*GP*CP*CP*A)-3')  G 4 78 0
12  Other macromolecule   DNA (5'-D(P*AP*GP*CP*TP*TP*GP*GP*C)-3')  H 8 166 0
13  Other macromolecule   DNA (5'-D(*GP*CP*CP*A)-3')  I 4 78 0
14  Other macromolecule   DNA (5'-D(P*AP*GP*CP*TP*TP*GP*GP*C)-3')  J 8 166 0
15  Other macromolecule   DNA (5'-D(*GP*CP*CP*A)-3')  K 4 78 0
16  Other macromolecule   DNA (5'-D(P*AP*GP*CP*TP*TP*GP*GP*C)-3')  L 8 166 0
17  Ligand   TYPE-2 RESTRICTION ENZYME HINDIII  A 4 0 14
18  Ligand   TYPE-2 RESTRICTION ENZYME HINDIII  B 2 0 2
19  Ligand   TYPE-2 RESTRICTION ENZYME HINDIII  C 3 0 8
20  Ligand   TYPE-2 RESTRICTION ENZYME HINDIII  D 3 0 8
21 Water     449 0 451
total       1749 11756 483
Proteins
Unit 1 LYS2 SER3 ALA4 LEU5 GLU6 LYS7 LEU8 LEU9 SER10 LEU11 ILE12 GLU13 ASN14 LEU15 THR16 ASN17 GLN18 GLU19 PHE20 LYS21 GLN22 ALA23 THR24 ASN25 SER26 LEU27 ILE28 SER29 PHE30 ILE31 TYR32 LYS33 LEU34 ASN35 ARG36 ASN37 GLU38 VAL39 ILE40 GLU41 LEU42 VAL43 ARG44 SER45 ILE46 GLY47 ILE48 LEU49 PRO50 GLU51 ALA52 ILE53 LYS54 PRO55 SER56 SER57 THR58 GLN59 GLU60 LYS61 LEU62 PHE63 SER64 LYS65 ALA66 GLY67 ASP68 ILE69 VAL70 LEU71 ALA72 LYS73 ALA74 PHE75 GLN76 LEU77 LEU78 ASN79 LEU80 ASN81 SER82 LYS83 PRO84 LEU85 GLU86 GLN87 ARG88 GLY89 ASN90 ALA91 GLY92 ASP93 VAL94 ILE95 ALA96 LEU97 SER98 LYS99 GLU100 PHE101 ASN102 TYR103 GLY104 LEU105 VAL106 ALA107 ASP108 ALA109 LYS110 SER111 PHE112 ARG113 LEU114 SER115 ARG116 THR117 ALA118 LYS119 ASN120 GLN121 LYS122 ASP123 PHE124 LYS125 VAL126 LYS127 ALA128 LEU129 SER130 GLU131 TRP132 ARG133 GLU134 ASP135 LYS136 ASP137 TYR138 ALA139 VAL140 LEU141 THR142 ALA143 PRO144 PHE145 PHE146 GLN147 TYR148 PRO149 THR150 THR151 LYS152 SER153 GLN154 ILE155 PHE156 LYS157 GLN158 SER159 LEU160 ASP161 GLU162 ASN163 VAL164 LEU165 LEU166 PHE167 SER168 TRP169 GLU170 HIS171 LEU172 ALA173 ILE174 LEU175 LEU176 GLN177 LEU178 ASP179 LEU180 GLU181 GLU182 THR183 ASN184 ILE185 PHE186 SER187 PHE188 GLU189 GLN190 LEU191 TRP192 ASN193 PHE194 PRO195 LYS196 LYS197 GLN198 SER199 LYS200 LYS201 THR202 SER203 VAL204 SER205 ASP206 ALA207 GLU208 ASN209 ASN210 PHE211 MET212 ARG213 ASP214 PHE215 ASN216 LYS217 TYR218 PHE219 MET220 ASP221 LEU222 PHE223 LYS224 ILE225 ASP226 LYS227 ASP228 THR229 LEU230 ASN231 GLN232 LEU233 LEU234 GLN235 LYS236 GLU237 ILE238 ASN239 PHE240 ILE241 GLU242 GLU243 ARG244 SER245 LEU246 ILE247 GLU248 LYS249 GLU250 TYR251 TRP252 LYS253 LYS254 GLN255 ILE256 ASN257 ILE258 ILE259 LYS260 ASN261 PHE262 THR263 ARG264 GLU265 GLU266 ALA267 ILE268 GLU269 ALA270 LEU271 LEU272 LYS273 ASP274 ILE275 ASN276 MET277 SER278 SER279 LYS280 ILE281 GLU282 THR283 ILE284 ASP285 SER286 PHE287 ILE288 LYS289 GLY290 ILE291 LYS292 SER293 ASN294 ASP295 ARG296 LEU297 TYR298 LEU299
Unit 2 LYS2 SER3 ALA4 LEU5 GLU6 LYS7 LEU8 LEU9 SER10 LEU11 ILE12 GLU13 ASN14 LEU15 THR16 ASN17 GLN18 GLU19 PHE20 LYS21 GLN22 ALA23 THR24 ASN25 SER26 LEU27 ILE28 SER29 PHE30 ILE31 TYR32 LYS33 LEU34 ASN35 ARG36 ASN37 GLU38 VAL39 ILE40 GLU41 LEU42 VAL43 ARG44 SER45 ILE46 GLY47 ILE48 LEU49 PRO50 GLU51 ALA52 ILE53 LYS54 PRO55 SER56 SER57 THR58 GLN59 GLU60 LYS61 LEU62 PHE63 SER64 LYS65 ALA66 GLY67 ASP68 ILE69 VAL70 LEU71 ALA72 LYS73 ALA74 PHE75 GLN76 LEU77 LEU78 ASN79 LEU80 ASN81 SER82 LYS83 PRO84 LEU85 GLU86 GLN87 ARG88 GLY89 ASN90 ALA91 GLY92 ASP93 VAL94 ILE95 ALA96 LEU97 SER98 LYS99 GLU100 PHE101 ASN102 TYR103 GLY104 LEU105 VAL106 ALA107 ASP108 ALA109 LYS110 SER111 PHE112 ARG113 LEU114 SER115 ARG116 THR117 ALA118 LYS119 ASN120 GLN121 LYS122 ASP123 PHE124 LYS125 VAL126 LYS127 ALA128 LEU129 SER130 GLU131 TRP132 ARG133 GLU134 ASP135 LYS136 ASP137 TYR138 ALA139 VAL140 LEU141 THR142 ALA143 PRO144 PHE145 PHE146 GLN147 TYR148 PRO149 THR150 THR151 LYS152 SER153 GLN154 ILE155 PHE156 LYS157 GLN158 SER159 LEU160 ASP161 GLU162 ASN163 VAL164 LEU165 LEU166 PHE167 SER168 TRP169 GLU170 HIS171 LEU172 ALA173 ILE174 LEU175 LEU176 GLN177 LEU178 ASP179 LEU180 GLU181 GLU182 THR183 ASN184 ILE185 PHE186 SER187 PHE188 GLU189 GLN190 LEU191 TRP192 ASN193 PHE194 PRO195 LYS196 LYS197 GLN198 SER199 LYS200 LYS201 THR202 SER203 VAL204 SER205 ASP206 ALA207 GLU208 ASN209 ASN210 PHE211 MET212 ARG213 ASP214 PHE215 ASN216 LYS217 TYR218 PHE219 MET220 ASP221 LEU222 PHE223 LYS224 ILE225 ASP226 LYS227 ASP228 THR229 LEU230 ASN231 GLN232 LEU233 LEU234 GLN235 LYS236 GLU237 ILE238 ASN239 PHE240 ILE241 GLU242 GLU243 ARG244 SER245 LEU246 ILE247 GLU248 LYS249 GLU250 TYR251 TRP252 LYS253 LYS254 GLN255 ILE256 ASN257 ILE258 ILE259 LYS260 ASN261 PHE262 THR263 ARG264 GLU265 GLU266 ALA267 ILE268 GLU269 ALA270 LEU271 LEU272 LYS273 ASP274 ILE275 ASN276 MET277 SER278 SER279 LYS280 ILE281 GLU282 THR283 ILE284 ASP285 SER286 PHE287 ILE288 LYS289 GLY290 ILE291 LYS292 SER293 ASN294 ASP295 ARG296 LEU297 TYR298 LEU299
Unit 3 LYS2 SER3 ALA4 LEU5 GLU6 LYS7 LEU8 LEU9 SER10 LEU11 ILE12 GLU13 ASN14 LEU15 THR16 ASN17 GLN18 GLU19 PHE20 LYS21 GLN22 ALA23 THR24 ASN25 SER26 LEU27 ILE28 SER29 PHE30 ILE31 TYR32 LYS33 LEU34 ASN35 ARG36 ASN37 GLU38 VAL39 ILE40 GLU41 LEU42 VAL43 ARG44 SER45 ILE46 GLY47 ILE48 LEU49 PRO50 GLU51 ALA52 ILE53 LYS54 PRO55 SER56 SER57 THR58 GLN59 GLU60 LYS61 LEU62 PHE63 SER64 LYS65 ALA66 GLY67 ASP68 ILE69 VAL70 LEU71 ALA72 LYS73 ALA74 PHE75 GLN76 LEU77 LEU78 ASN79 LEU80 ASN81 SER82 LYS83 PRO84 LEU85 GLU86 GLN87 ARG88 GLY89 ASN90 ALA91 GLY92 ASP93 VAL94 ILE95 ALA96 LEU97 SER98 LYS99 GLU100 PHE101 ASN102 TYR103 GLY104 LEU105 VAL106 ALA107 ASP108 ALA109 LYS110 SER111 PHE112 ARG113 LEU114 SER115 ARG116 THR117 ALA118 LYS119 ASN120 GLN121 LYS122 ASP123 PHE124 LYS125 VAL126 LYS127 ALA128 LEU129 SER130 GLU131 TRP132 ARG133 GLU134 ASP135 LYS136 ASP137 TYR138 ALA139 VAL140 LEU141 THR142 ALA143 PRO144 PHE145 PHE146 GLN147 TYR148 PRO149 THR150 THR151 LYS152 SER153 GLN154 ILE155 PHE156 LYS157 GLN158 SER159 LEU160 ASP161 GLU162 ASN163 VAL164 LEU165 LEU166 PHE167 SER168 TRP169 GLU170 HIS171 LEU172 ALA173 ILE174 LEU175 LEU176 GLN177 LEU178 ASP179 LEU180 GLU181 GLU182 THR183 ASN184 ILE185 PHE186 SER187 PHE188 GLU189 GLN190 LEU191 TRP192 ASN193 PHE194 PRO195 LYS196 LYS197 GLN198 SER199 LYS200 LYS201 THR202 SER203 VAL204 SER205 ASP206 ALA207 GLU208 ASN209 ASN210 PHE211 MET212 ARG213 ASP214 PHE215 ASN216 LYS217 TYR218 PHE219 MET220 ASP221 LEU222 PHE223 LYS224 ILE225 ASP226 LYS227 ASP228 THR229 LEU230 ASN231 GLN232 LEU233 LEU234 GLN235 LYS236 GLU237 ILE238 ASN239 PHE240 ILE241 GLU242 GLU243 ARG244 SER245 LEU246 ILE247 GLU248 LYS249 GLU250 TYR251 TRP252 LYS253 LYS254 GLN255 ILE256 ASN257 ILE258 ILE259 LYS260 ASN261 PHE262 THR263 ARG264 GLU265 GLU266 ALA267 ILE268 GLU269 ALA270 LEU271 LEU272 LYS273 ASP274 ILE275 ASN276 MET277 SER278 SER279 LYS280 ILE281 GLU282 THR283 ILE284 ASP285 SER286 PHE287 ILE288 LYS289 GLY290 ILE291 LYS292 SER293 ASN294 ASP295 ARG296 LEU297 TYR298 LEU299
Unit 4 LYS2 SER3 ALA4 LEU5 GLU6 LYS7 LEU8 LEU9 SER10 LEU11 ILE12 GLU13 ASN14 LEU15 THR16 ASN17 GLN18 GLU19 PHE20 LYS21 GLN22 ALA23 THR24 ASN25 SER26 LEU27 ILE28 SER29 PHE30 ILE31 TYR32 LYS33 LEU34 ASN35 ARG36 ASN37 GLU38 VAL39 ILE40 GLU41 LEU42 VAL43 ARG44 SER45 ILE46 GLY47 ILE48 LEU49 PRO50 GLU51 ALA52 ILE53 LYS54 PRO55 SER56 SER57 THR58 GLN59 GLU60 LYS61 LEU62 PHE63 SER64 LYS65 ALA66 GLY67 ASP68 ILE69 VAL70 LEU71 ALA72 LYS73 ALA74 PHE75 GLN76 LEU77 LEU78 ASN79 LEU80 ASN81 SER82 LYS83 PRO84 LEU85 GLU86 GLN87 ARG88 GLY89 ASN90 ALA91 GLY92 ASP93 VAL94 ILE95 ALA96 LEU97 SER98 LYS99 GLU100 PHE101 ASN102 TYR103 GLY104 LEU105 VAL106 ALA107 ASP108 ALA109 LYS110 SER111 PHE112 ARG113 LEU114 SER115 ARG116 THR117 ALA118 LYS119 ASN120 GLN121 LYS122 ASP123 PHE124 LYS125 VAL126 LYS127 ALA128 LEU129 SER130 GLU131 TRP132 ARG133 GLU134 ASP135 LYS136 ASP137 TYR138 ALA139 VAL140 LEU141 THR142 ALA143 PRO144 PHE145 PHE146 GLN147 TYR148 PRO149 THR150 THR151 LYS152 SER153 GLN154 ILE155 PHE156 LYS157 GLN158 SER159 LEU160 ASP161 GLU162 ASN163 VAL164 LEU165 LEU166 PHE167 SER168 TRP169 GLU170 HIS171 LEU172 ALA173 ILE174 LEU175 LEU176 GLN177 LEU178 ASP179 LEU180 GLU181 GLU182 THR183 ASN184 ILE185 PHE186 SER187 PHE188 GLU189 GLN190 LEU191 TRP192 ASN193 PHE194 PRO195 LYS196 LYS197 GLN198 SER199 LYS200 LYS201 THR202 SER203 VAL204 SER205 ASP206 ALA207 GLU208 ASN209 ASN210 PHE211 MET212 ARG213 ASP214 PHE215 ASN216 LYS217 TYR218 PHE219 MET220 ASP221 LEU222 PHE223 LYS224 ILE225 ASP226 LYS227 ASP228 THR229 LEU230 ASN231 GLN232 LEU233 LEU234 GLN235 LYS236 GLU237 ILE238 ASN239 PHE240 ILE241 GLU242 GLU243 ARG244 SER245 LEU246 ILE247 GLU248 LYS249 GLU250 TYR251 TRP252 LYS253 LYS254 GLN255 ILE256 ASN257 ILE258 ILE259 LYS260 ASN261 PHE262 THR263 ARG264 GLU265 GLU266 ALA267 ILE268 GLU269 ALA270 LEU271 LEU272 LYS273 ASP274 ILE275 ASN276 MET277 SER278 SER279 LYS280 ILE281 GLU282 THR283 ILE284 ASP285 SER286 PHE287 ILE288 LYS289 GLY290 ILE291 LYS292 SER293 ASN294 ASP295 ARG296 LEU297 TYR298 LEU299
Other macromolecules
Unit 5 DG1 DC2 DC3 DA4 DA5 DG6 DC7 DT8 DT9 DG10 DG11 DC12
Unit 6 DG1 DC2 DC3 DA4 DA5 DG6 DC7 DT8 DT9 DG10 DG11 DC12
Unit 7 DG1 DC2 DC3 DA4 DA5 DG6 DC7 DT8 DT9 DG10 DG11 DC12
Unit 8 DG1 DC2 DC3 DA4 DA5 DG6 DC7 DT8 DT9 DG10 DG11 DC12
Unit 9 DG1 DC2 DC3 DA4
Unit 10 DA1 DG2 DC3 DT4 DT5 DG6 DG7 DC8
Unit 11 DG1 DC2 DC3 DA4
Unit 12 DA1 DG2 DC3 DT4 DT5 DG6 DG7 DC8
Unit 13 DG1 DC2 DC3 DA4
Unit 14 DA1 DG2 DC3 DT4 DT5 DG6 DG7 DC8
Unit 15 DG1 DC2 DC3 DA4
Unit 16 DA1 DG2 DC3 DT4 DT5 DG6 DG7 DC8
Ligands
Unit 17 GOL301 GOL302 MN303 MN304
Unit 18 MN301 MN302
Unit 19 GOL301 MN302 MN303
Unit 20 GOL301 MN302 MN303
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany