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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF ARCHAEOGLOBUS FULGIDUS ALANYL-TRNA SYNT COMPLEX WITH A TRNA(ALA) VARIANT HAVING A3.U70
Keywords AMINOACYL-TRNA SYNTHETASES, PROTEIN-RNA COMPLEX, HOMODIMER, ALANYLADENYLATE ANALOGUE, LIGASE-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3WQZ     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ALANINE--TRNA LIGASE  A 905 7209 0
2  Protein   ALANINE--TRNA LIGASE  B 904 7203 0
3  RNA    C 75 1608 0
4  Ligand   ALANINE--TRNA LIGASE  A 2 0 29
5  Ligand   ALANINE--TRNA LIGASE  B 2 0 29
total       1888 16020 58
Proteins
Unit 1 THR2 LEU3 ASP4 GLU5 GLU6 TYR7 LEU8 ASP9 ILE10 THR11 PHE12 LEU13 THR14 GLU15 ASN16 GLY17 PHE18 VAL19 ARG20 LYS21 ARG22 CYS23 PRO24 LYS25 CYS26 GLY27 LYS28 HIS29 PHE30 TRP31 THR32 ALA33 ASP34 PRO35 GLU36 ARG37 GLU38 ILE39 CYS40 GLY41 ASP42 PRO43 PRO44 CYS45 GLU46 SER47 TYR48 SER49 PHE50 ILE51 GLY52 ASN53 PRO54 VAL55 PHE56 LYS57 LYS58 PRO59 PHE60 GLU61 LEU62 ASP63 GLU64 MET65 ARG66 GLU67 TYR68 TYR69 LEU70 ASN71 PHE72 PHE73 GLU74 ARG75 ARG76 GLY77 HIS78 GLY79 ARG80 ILE81 GLU82 ARG83 TYR84 PRO85 VAL86 VAL87 ALA88 ARG89 TRP90 ARG91 THR92 ASP93 ILE94 TYR95 LEU96 THR97 ILE98 ALA99 SER100 ILE101 ALA102 ASP103 PHE104 GLN105 PRO106 PHE107 VAL108 THR109 SER110 GLY111 VAL112 ALA113 PRO114 PRO115 PRO116 ALA117 ASN118 PRO119 LEU120 THR121 ILE122 SER123 GLN124 PRO125 CYS126 ILE127 ARG128 LEU129 ASP130 ASP131 LEU132 ASP133 SER134 VAL135 GLY136 ARG137 THR138 GLY139 ARG140 HIS141 LEU142 THR143 LEU144 PHE145 GLU146 MET147 MET148 ALA149 HIS150 HIS151 ALA152 PHE153 ASN154 TYR155 PRO156 GLY157 LYS158 GLU159 ILE160 TYR161 TRP162 LYS163 ASN164 GLU165 THR166 VAL167 ALA168 TYR169 CYS170 THR171 GLU172 LEU173 LEU174 ASN175 GLU176 LEU177 GLY178 VAL179 LYS180 LYS181 GLU182 ASP183 ILE184 VAL185 TYR186 LYS187 GLU188 GLU189 PRO190 TRP191 ALA192 GLY193 GLY194 GLY195 ASN196 ALA197 GLY198 PRO199 CYS200 LEU201 GLU202 ALA203 ILE204 VAL205 GLY206 GLY207 LEU208 GLU209 VAL210 ALA211 THR212 LEU213 VAL214 PHE215 MET216 ASN217 LEU218 GLU219 GLU220 HIS221 PRO222 GLU223 GLY224 ASP225 ILE226 GLU227 ILE228 LYS229 GLY230 ALA231 ARG232 TYR233 ARG234 LYS235 MET236 ASP237 ASN238 TYR239 ILE240 VAL241 ASP242 THR243 GLY244 TYR245 GLY246 LEU247 GLU248 ARG249 PHE250 VAL251 TRP252 ALA253 SER254 LYS255 GLY256 THR257 PRO258 THR259 VAL260 TYR261 ASP262 ALA263 ILE264 PHE265 PRO266 GLU267 VAL268 VAL269 ASP270 THR271 ILE272 ILE273 ASP274 ASN275 SER276 ASN277 VAL278 SER279 PHE280 ASN281 ARG282 GLU283 ASP284 GLU285 ARG286 VAL287 ARG288 ARG289 ILE290 VAL291 ALA292 GLU293 SER294 SER295 LYS296 LEU297 ALA298 GLY299 ILE300 MET301 GLY302 GLU303 LEU304 ARG305 GLY306 GLU307 ARG308 LEU309 ASN310 GLN311 LEU312 ARG313 LYS314 SER315 VAL316 ALA317 ASP318 THR319 VAL320 GLY321 VAL322 SER323 VAL324 GLU325 GLU326 LEU327 GLU328 GLY329 ILE330 VAL331 VAL332 PRO333 LEU334 GLU335 LYS336 VAL337 TYR338 SER339 LEU340 ALA341 ASP342 HIS343 THR344 ARG345 CYS346 ILE347 LEU348 PHE349 MET350 LEU351 GLY352 ASP353 GLY354 LEU355 VAL356 PRO357 SER358 ASN359 ALA360 GLY361 ALA362 GLY363 TYR364 LEU365 ALA366 ARG367 LEU368 MET369 ILE370 ARG371 ARG372 SER373 LEU374 ARG375 LEU376 ALA377 GLU378 GLU379 LEU380 GLU381 LEU382 GLY383 LEU384 ASP385 LEU386 TYR387 ASP388 LEU389 VAL390 GLU391 MET392 HIS393 LYS394 LYS395 ILE396 LEU397 GLY398 PHE399 GLU400 PHE401 ASP402 VAL403 PRO404 LEU405 SER406 THR407 VAL408 GLN409 GLU410 ILE411 LEU412 GLU413 LEU414 GLU415 LYS416 GLU417 ARG418 TYR419 ARG420 THR421 THR422 VAL423 SER424 LYS425 GLY426 THR427 ARG428 LEU429 VAL430 GLU431 ARG432 LEU433 VAL434 GLU435 ARG436 LYS437 LYS438 LYS439 LEU440 GLU441 LYS442 ASP443 ASP444 LEU445 ILE446 GLU447 LEU448 TYR449 ASP450 SER451 HIS452 GLY453 ILE454 PRO455 VAL456 GLU457 LEU458 ALA459 VAL460 GLY461 ILE462 ALA463 ALA464 GLU465 LYS466 GLY467 ALA468 GLU469 VAL470 GLU471 MET472 PRO473 LYS474 ASP475 ILE476 TYR477 ALA478 GLU479 LEU480 ALA481 LYS482 ARG483 HIS484 SER485 LYS486 ALA487 GLU488 LYS489 VAL490 GLN491 GLU492 LYS493 LYS494 ILE495 THR496 LEU497 GLN498 ASN499 GLU500 TYR501 PRO502 ALA503 THR504 GLU505 LYS506 LEU507 TYR508 TYR509 ASP510 ASP511 PRO512 THR513 LEU514 LEU515 GLU516 PHE517 GLU518 ALA519 GLU520 VAL521 ILE522 GLY523 VAL524 GLU525 GLY526 ASP527 PHE528 VAL529 ILE530 LEU531 ASN532 ARG533 SER534 ALA535 PHE536 TYR537 PRO538 GLU539 SER540 GLY541 GLY542 GLN543 ASP544 ASN545 ASP546 VAL547 GLY548 TYR549 LEU550 ILE551 ALA552 ASN553 GLY554 GLY555 LYS556 PHE557 GLU558 VAL559 VAL560 ASP561 VAL562 LEU563 GLU564 ALA565 ASP566 GLY567 VAL568 VAL569 LEU570 HIS571 VAL572 VAL573 LYS574 GLY575 ALA576 LYS577 PRO578 GLU579 VAL580 GLY581 THR582 LYS583 VAL584 LYS585 GLY586 VAL587 ILE588 ASP589 SER590 ASP591 VAL592 ARG593 TRP594 ARG595 HIS596 MET597 ARG598 HIS599 HIS600 SER601 ALA602 THR603 HIS604 VAL605 LEU606 LEU607 TYR608 SER609 LEU610 GLN611 LYS612 VAL613 LEU614 GLY615 ASN616 HIS617 VAL618 TRP619 GLN620 ALA621 GLY622 ALA623 ARG624 LYS625 GLU626 PHE627 SER628 LYS629 ALA630 ARG631 LEU632 ASP633 VAL634 THR635 HIS636 PHE637 ARG638 ARG639 PRO640 SER641 GLU642 GLU643 GLU644 ILE645 LYS646 GLU647 ILE648 GLU649 MET650 LEU651 ALA652 ASN653 ARG654 GLU655 ILE656 LEU657 ALA658 ASN659 LYS660 PRO661 ILE662 LYS663 TRP664 GLU665 TRP666 MET667 ASP668 ARG669 ILE670 GLU671 ALA672 GLU673 ARG674 LYS675 PHE676 GLY677 PHE678 ARG679 LEU680 TYR681 GLN682 GLY683 GLY684 VAL685 PRO686 PRO687 GLY688 ARG689 LYS690 ILE691 ARG692 VAL693 VAL694 GLN695 VAL696 GLY697 ASP698 ASP699 VAL700 GLN701 ALA702 CYS703 GLY704 GLY705 THR706 HIS707 CYS708 ARG709 SER710 THR711 GLY712 GLU713 ILE714 GLY715 MET716 LEU717 LYS718 ILE719 LEU720 LYS721 VAL722 GLU723 SER724 ILE725 GLN726 ASP727 GLY728 VAL729 ILE730 ARG731 PHE732 GLU733 PHE734 ALA735 ALA736 GLY737 GLU738 ALA739 ALA740 ILE741 GLU742 ALA743 VAL744 GLU745 GLU746 MET747 GLU748 ARG749 LEU750 LEU751 ARG752 GLU753 ALA754 SER755 SER756 ILE757 LEU758 ARG759 VAL760 GLU761 PRO762 ALA763 LYS764 LEU765 PRO766 LYS767 THR768 VAL769 GLU770 ARG771 PHE772 PHE773 GLU774 GLU775 TRP776 LYS777 ASP778 GLN779 ARG780 LYS781 GLU782 ILE783 GLU784 ARG785 LEU786 LYS787 SER788 VAL789 ILE790 ALA791 ASP792 LEU793 TRP794 ALA795 ASP796 ILE797 LEU798 MET799 GLU800 ARG801 ALA802 GLU803 GLU804 PHE805 ASP806 SER807 MET808 LYS809 VAL810 VAL811 ALA812 GLU813 VAL814 VAL815 ASP816 ALA817 ASP818 MET819 GLN820 ALA821 LEU822 GLN823 LYS824 LEU825 ALA826 GLU827 ARG828 LEU829 ALA830 GLU831 LYS832 GLY833 ALA834 VAL835 GLY836 CYS837 LEU838 MET839 ALA840 LYS841 GLY842 GLU843 GLY844 LYS845 VAL846 PHE847 VAL848 VAL849 THR850 PHE851 SER852 GLY853 GLN854 LYS855 TYR856 ASP857 ALA858 ARG859 GLU860 LEU861 LEU862 ARG863 GLU864 ILE865 GLY866 ARG867 VAL868 ALA869 LYS870 GLY871 SER872 GLY873 GLY874 GLY875 ARG876 LYS877 ASP878 VAL879 ALA880 GLN881 GLY882 ALA883 VAL884 GLN885 GLN886 LEU887 LEU888 ASP889 ARG890 GLU891 GLU892 MET893 LEU894 ASP895 VAL896 ILE897 PHE898 ARG899 PHE900 LEU901 SER902 GLU903 HIS904 GLU905 GLY906
Unit 2 MET1 THR2 LEU3 ASP4 GLU5 GLU6 TYR7 LEU8 ASP9 ILE10 THR11 PHE12 LEU13 THR14 GLU15 ASN16 GLY17 PHE18 VAL19 ARG20 LYS21 ARG22 CYS23 PRO24 LYS25 CYS26 GLY27 LYS28 HIS29 PHE30 TRP31 THR32 ALA33 ASP34 PRO35 GLU36 ARG37 GLU38 ILE39 CYS40 GLY41 ASP42 PRO43 PRO44 CYS45 GLU46 SER47 TYR48 SER49 PHE50 ILE51 GLY52 ASN53 PRO54 VAL55 PHE56 LYS57 LYS58 PRO59 PHE60 GLU61 LEU62 ASP63 GLU64 MET65 ARG66 GLU67 TYR68 TYR69 LEU70 ASN71 PHE72 PHE73 GLU74 ARG75 ARG76 GLY77 HIS78 GLY79 ARG80 ILE81 GLU82 ARG83 TYR84 PRO85 VAL86 VAL87 ALA88 ARG89 TRP90 ARG91 THR92 ASP93 ILE94 TYR95 LEU96 THR97 ILE98 ALA99 SER100 ILE101 ALA102 ASP103 PHE104 GLN105 PRO106 PHE107 VAL108 THR109 SER110 GLY111 VAL112 ALA113 PRO114 PRO115 PRO116 ALA117 ASN118 PRO119 LEU120 THR121 ILE122 SER123 GLN124 PRO125 CYS126 ILE127 ARG128 LEU129 ASP130 ASP131 LEU132 ASP133 SER134 VAL135 GLY136 ARG137 THR138 GLY139 ARG140 HIS141 LEU142 THR143 LEU144 PHE145 GLU146 MET147 MET148 ALA149 HIS150 HIS151 ALA152 PHE153 ASN154 TYR155 PRO156 GLY157 LYS158 GLU159 ILE160 TYR161 TRP162 LYS163 ASN164 GLU165 THR166 VAL167 ALA168 TYR169 CYS170 THR171 GLU172 LEU173 LEU174 ASN175 GLU176 LEU177 GLY178 VAL179 LYS180 LYS181 GLU182 ASP183 ILE184 VAL185 TYR186 LYS187 GLU188 GLU189 PRO190 TRP191 ALA192 GLY193 GLY194 GLY195 ASN196 ALA197 GLY198 PRO199 CYS200 LEU201 GLU202 ALA203 ILE204 VAL205 GLY206 GLY207 LEU208 GLU209 VAL210 ALA211 THR212 LEU213 VAL214 PHE215 MET216 ASN217 LEU218 GLU219 GLU220 HIS221 PRO222 GLU223 GLY224 ASP225 ILE226 GLU227 ILE228 LYS229 GLY230 ALA231 ARG232 TYR233 ARG234 LYS235 MET236 ASP237 ASN238 TYR239 ILE240 VAL241 ASP242 THR243 GLY244 TYR245 GLY246 LEU247 GLU248 ARG249 PHE250 VAL251 TRP252 ALA253 SER254 LYS255 GLY256 THR257 PRO258 THR259 VAL260 TYR261 ASP262 ALA263 ILE264 PHE265 PRO266 GLU267 VAL268 VAL269 ASP270 THR271 ILE272 ILE273 ASP274 ASN275 SER276 ASN277 VAL278 SER279 PHE280 ASN281 ARG282 GLU283 ASP284 GLU285 ARG286 VAL287 ARG288 ARG289 ILE290 VAL291 ALA292 GLU293 SER294 SER295 LYS296 LEU297 ALA298 GLY299 ILE300 MET301 GLY302 GLU303 LEU304 ARG305 GLY306 GLU307 ARG308 LEU309 ASN310 GLN311 LEU312 ARG313 LYS314 SER315 VAL316 ALA317 ASP318 THR319 VAL320 GLY321 VAL322 SER323 VAL324 GLU325 GLU326 LEU327 GLU328 GLY329 ILE330 VAL331 VAL332 PRO333 LEU334 GLU335 LYS336 VAL337 TYR338 SER339 LEU340 ALA341 ASP342 HIS343 THR344 ARG345 CYS346 ILE347 LEU348 PHE349 MET350 LEU351 GLY352 ASP353 GLY354 LEU355 VAL356 PRO357 SER358 ASN359 ALA360 GLY361 ALA362 GLY363 TYR364 LEU365 ALA366 ARG367 LEU368 MET369 ILE370 ARG371 ARG372 SER373 LEU374 ARG375 LEU376 ALA377 GLU378 GLU379 LEU380 GLU381 LEU382 GLY383 LEU384 ASP385 LEU386 TYR387 ASP388 LEU389 VAL390 GLU391 MET392 HIS393 LYS394 LYS395 ILE396 LEU397 GLY398 PHE399 GLU400 PHE401 ASP402 VAL403 PRO404 LEU405 SER406 THR407 VAL408 GLN409 GLU410 ILE411 LEU412 GLU413 LEU414 GLU415 LYS416 GLU417 ARG418 TYR419 ARG420 THR421 THR422 VAL423 SER424 LYS425 GLY426 THR427 ARG428 LEU429 VAL430 GLU431 ARG432 LEU433 VAL434 GLU435 ARG436 LYS437 LYS438 LYS439 LEU440 GLU441 LYS442 ASP443 ASP444 LEU445 ILE446 GLU447 LEU448 TYR449 ASP450 SER451 HIS452 GLY453 ILE454 PRO455 VAL456 GLU457 LEU458 ALA459 VAL460 GLY461 ILE462 ALA463 ALA464 GLU465 LYS466 GLY467 ALA468 GLU469 VAL470 GLU471 MET472 PRO473 LYS474 ASP475 ILE476 TYR477 ALA478 GLU479 LEU480 ALA481 LYS482 ARG483 HIS484 SER485 LYS486 ALA487 GLU488 LYS489 VAL490 GLN491 GLU492 LYS493 LYS494 ILE495 THR496 LEU497 GLN498 ASN499 GLU500 TYR501 PRO502 ALA503 THR504 GLU505 LYS506 LEU507 TYR508 TYR509 ASP510 ASP511 PRO512 THR513 LEU514 LEU515 GLU516 PHE517 GLU518 ALA519 GLU520 VAL521 ILE522 GLY523 VAL524 GLU525 GLY526 ASP527 PHE528 VAL529 ILE530 LEU531 ASN532 ARG533 SER534 ALA535 PHE536 TYR537 PRO538 GLU539 SER540 GLY541 GLY542 GLN543 ASP544 ASN545 ASP546 VAL547 GLY548 TYR549 LEU550 ILE551 ALA552 ASN553 GLY554 GLY555 LYS556 PHE557 GLU558 VAL559 VAL560 ASP561 VAL562 LEU563 GLU564 ALA565 ASP566 GLY567 VAL568 VAL569 LEU570 HIS571 VAL572 VAL573 LYS574 GLY575 ALA576 LYS577 PRO578 GLU579 VAL580 GLY581 THR582 LYS583 VAL584 LYS585 GLY586 VAL587 ILE588 ASP589 SER590 ASP591 VAL592 ARG593 TRP594 ARG595 HIS596 MET597 ARG598 HIS599 HIS600 SER601 ALA602 THR603 HIS604 VAL605 LEU606 LEU607 TYR608 SER609 LEU610 GLN611 LYS612 VAL613 LEU614 GLY615 ASN616 HIS617 VAL618 TRP619 GLN620 ALA621 GLY622 ALA623 ARG624 LYS625 GLU626 PHE627 SER628 LYS629 ALA630 ARG631 LEU632 ASP633 VAL634 THR635 HIS636 PHE637 ARG638 ARG639 PRO640 SER641 GLU642 GLU643 GLU644 ILE645 LYS646 GLU647 ILE648 GLU649 MET650 LEU651 ALA652 ASN653 ARG654 GLU655 ILE656 LEU657 ALA658 ASN659 LYS660 PRO661 ILE662 LYS663 TRP664 GLU665 TRP666 MET667 ASP668 ARG669 ILE670 GLU671 ALA672 GLU673 ARG674 LYS675 PHE676 GLY677 PHE678 ARG679 LEU680 TYR681 GLN682 GLY683 GLY684 VAL685 PRO686 PRO687 GLY688 ARG689 LYS690 ILE691 ARG692 VAL693 VAL694 GLN695 VAL696 GLY697 ASP698 ASP699 VAL700 GLN701 ALA702 CYS703 GLY704 GLY705 THR706 HIS707 CYS708 ARG709 SER710 THR711 GLY712 GLU713 ILE714 GLY715 MET716 LEU717 LYS718 ILE719 LEU720 LYS721 VAL722 GLU723 SER724 ILE725 GLN726 ASP727 GLY728 VAL729 ILE730 ARG731 PHE732 GLU733 PHE734 ALA735 ALA736 GLY737 GLU738 ALA739 ALA740 ILE741 GLU742 ALA743 VAL744 GLU745 GLU746 MET747 GLU748 ARG749 LEU750 LEU751 ARG752 GLU753 ALA754 SER755 SER756 ILE757 LEU758 ARG759 VAL760 GLU761 PRO762 ALA763 LYS764 LEU765 PRO766 LYS767 THR768 VAL769 GLU770 ARG771 PHE772 PHE773 GLU774 GLU775 TRP776 LYS777 ASP778 GLN779 ARG780 LYS781 GLU782 ILE783 GLU784 ARG785 LEU786 LYS787 SER788 VAL789 ILE790 ALA791 ASP792 LEU793 TRP794 ALA795 ASP796 ILE797 LEU798 MET799 GLU800 ARG801 ALA802 GLU803 GLU804 PHE805 ASP806 SER807 MET808 LYS809 VAL810 VAL811 ALA812 GLU813 VAL814 VAL815 ASP816 ALA817 ASP818 MET819 GLN820 ALA821 LEU822 GLN823 LYS824 LEU825 ALA826 GLU827 ARG828 LEU829 ALA830 GLU831 LYS832 GLY833 ALA834 VAL835 GLY836 CYS837 LEU838 MET839 ALA840 LYS841 GLY842 GLU843 GLY844 LYS845 VAL846 PHE847 VAL848 VAL849 THR850 PHE851 SER852 GLY853 GLN854 LYS855 TYR856 ASP857 ALA858 ARG859 GLU860 LEU861 LEU862 ARG863 GLU864 ILE865 GLY866 ARG867 VAL868 ALA869 LYS870 GLY871 SER872 GLY873 GLY874 GLY875 ARG876 LYS877 ASP878 VAL879 ALA880 GLN881 GLY882 ALA883 VAL884 GLN885 GLN886 LEU887 LEU888 ASP889 ARG890 GLU891 GLU892 MET893 LEU894 ASP895 VAL896 ILE897 PHE898 ARG899 PHE900 LEU901 SER902 GLU903 HIS904
Nucleic acids
Unit 3 G1601 G1602 A1603 C1604 U1605 C1606 G1607 U1608 A1609 G1610 C1611 U1612 C1613 A1614 G1615 C1616 G1618 G1619 G1620 A1621 G1622 A1623 G1624 C1625 G1626 C1627 C1628 G1629 C1630 C1631 U1632 U1633 U1634 G1635 C1636 G1637 A1638 G1639 G1640 C1641 G1642 G1643 A1644 G1645 G1646 C1647 C1648 G1649 C1650 G1651 G1652 G1653 U1654 U1655 C1656 A1657 A1658 A1659 U1660 C1661 C1662 C1663 G1664 C1665 C1666 G1667 A1668 G1669 U1670 C1671 C1672 A1673 C1674 C1675 A1676
Ligands
Unit 4 A5A1001 ZN1002
Unit 5 A5A1001 ZN1002
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany