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Sequence, Chains, Asymmetric and Biological Units

Title CYCLIC HEXAPEPTIDE PKIDNP IN COMPLEX WITH HIV-1 INTEGRASE
Keywords DNA INTEGRATION, AIDS, INTEGRASE, ENDONUCLEASE, DNA BINDING, PROTEIN, LEDGF, LENS EPITHELIUM-DERIVED GROWTH FACTOR, RNAS NUCLEOTIDYL TRANSFERASE, VIRAL PROTEIN-PEPTIDE COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3WNG     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   GAG-POL POLYPROTEIN  A 138 1054 0
2  Protein   GAG-POL POLYPROTEIN  B 136 1047 0
3  Protein   PKIDN(DPR) PEPTIDE  C 6 40 7
4  Protein   PKIDN(DPR) PEPTIDE  D 6 40 7
5  Ligand   GAG-POL POLYPROTEIN  A 6 0 18
6  Ligand   GAG-POL POLYPROTEIN  B 6 0 18
7 Water     154 0 154
total       452 2181 204

Proteins
Unit 1 SER57 PRO58 GLY59 ILE60 TRP61 GLN62 LEU63 ASP64 CYS65 THR66 HIS67 LEU68 GLU69 GLY70 LYS71 VAL72 ILE73 LEU74 VAL75 ALA76 VAL77 HIS78 VAL79 ALA80 SER81 GLY82 TYR83 ILE84 GLU85 ALA86 GLU87 VAL88 ILE89 PRO90 ALA91 GLU92 THR93 GLY94 GLN95 GLU96 THR97 ALA98 TYR99 PHE100 LEU101 LEU102 LYS103 LEU104 ALA105 GLY106 ARG107 TRP108 PRO109 VAL110 LYS111 THR112 VAL113 HIS114 THR115 ASP116 ASN117 GLY118 SER119 ASN120 PHE121 THR122 GLY123 ALA124 THR125 VAL126 ARG127 ALA128 ALA129 CYS130 ASP131 TRP132 ALA133 GLY134 ILE135 LYS136 GLN137 ILE151 GLU152 SER153 MET154 ASN155 LYS156 GLU157 LEU158 LYS159 LYS160 ILE161 ILE162 GLY163 GLN164 VAL165 ARG166 ASP167 GLN168 ALA169 GLU170 HIS171 LEU172 LYS173 THR174 ALA175 VAL176 GLN177 MET178 ALA179 VAL180 PHE181 ILE182 HIS183 ASN184 HIS185 LYS186 ARG187 LYS188 GLY189 GLY192 GLY193 TYR194 SER195 ALA196 GLY197 GLU198 ARG199 ILE200 VAL201 ASP202 ILE203 ILE204 ALA205 THR206 ASP207 ILE208 GLN209
Unit 2 SER56 SER57 PRO58 GLY59 ILE60 TRP61 GLN62 LEU63 ASP64 CYS65 THR66 HIS67 LEU68 GLU69 GLY70 LYS71 VAL72 ILE73 LEU74 VAL75 ALA76 VAL77 HIS78 VAL79 ALA80 SER81 GLY82 TYR83 ILE84 GLU85 ALA86 GLU87 VAL88 ILE89 PRO90 ALA91 GLU92 THR93 GLY94 GLN95 GLU96 THR97 ALA98 TYR99 PHE100 LEU101 LEU102 LYS103 LEU104 ALA105 GLY106 ARG107 TRP108 PRO109 VAL110 LYS111 THR112 VAL113 HIS114 THR115 ASP116 ASN117 GLY118 SER119 ASN120 PHE121 THR122 GLY123 ALA124 THR125 VAL126 ARG127 ALA128 ALA129 CYS130 ASP131 TRP132 ALA133 GLY134 ILE135 LYS136 GLN137 GLU152 SER153 MET154 ASN155 LYS156 GLU157 LEU158 LYS159 LYS160 ILE161 ILE162 GLY163 GLN164 VAL165 ARG166 ASP167 GLN168 ALA169 GLU170 HIS171 LEU172 LYS173 THR174 ALA175 VAL176 GLN177 MET178 ALA179 VAL180 PHE181 ILE182 HIS183 ASN184 HIS185 LYS186 ARG187 LYS188 GLY193 TYR194 SER195 ALA196 GLY197 GLU198 ARG199 ILE200 VAL201 ASP202 ILE203 ILE204 ALA205 THR206 ASP207 ILE208 GLN209
Unit 3 PRO1 LYS2 ILE3 ASP4 ASN5 DPR6
Unit 4 PRO1 LYS2 ILE3 ASP4 ASN5 DPR6

Ligands
Unit 5 CD1001 CD1002 CL1003 SO41004 SO41005 SO41006
Unit 6 CD301 CD302 CL303 SO4304 SO4305 SO4306

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany