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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF MNMC2 FROM AQUIFEX AEOLICUS
Keywords TRNA WOBBLE URIDINE, MODIFICATION ENZYME, GENETIC CODE, 5- METHYLAMINOMETHYL-2-THIOURIDINE, METHYLTRANSFERASE, 2-CODON STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN ST AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMI INITIATIVE, RSGI, TRANSFERASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3VYW     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   MNMC2  A 303 2486 16
2  Protein   MNMC2  B 305 2504 16
3  Protein   MNMC2  C 305 2504 16
4  Protein   MNMC2  D 306 2510 16
5  Ligand   MNMC2  A 1 0 27
6  Ligand   MNMC2  B 2 0 36
7  Ligand   MNMC2  C 2 0 36
8  Ligand   MNMC2  D 1 0 27
9 Water     146 0 146
total       1371 10004 336
Proteins
Unit 1 LYS2 ARG3 GLU4 GLU5 TYR6 LEU7 LYS8 ASN9 TYR10 LEU11 GLU12 SER13 TYR14 LEU15 ARG16 LYS17 LYS18 GLU19 VAL20 SER21 LEU22 THR23 GLU24 GLU25 GLU26 PHE27 ASN28 VAL29 ILE30 LEU31 ARG32 GLU33 PHE34 LEU35 ARG36 PHE37 ALA38 TYR39 ASN40 PRO41 GLU42 GLU43 SER44 GLY45 GLN46 GLU47 ILE48 ALA49 ASP50 THR51 ALA52 ASP53 GLY54 SER55 LYS56 THR57 LEU58 ILE59 HIS60 LYS61 THR62 TYR63 GLY64 GLU65 PRO66 TYR67 HIS68 SER69 GLN70 THR71 ALA72 GLY73 ALA74 ILE75 ARG76 GLU77 SER78 LEU79 TYR80 LYS81 PHE82 VAL83 ARG84 PRO85 SER86 ARG87 ILE88 LEU89 GLU90 LYS91 ALA92 LYS93 GLU94 ARG95 LYS96 VAL97 ILE98 ARG99 ILE100 LEU101 ASP102 VAL103 GLY104 PHE105 GLY106 LEU107 GLY108 TYR109 ASN110 LEU111 ALA112 VAL113 ALA114 LEU115 LYS116 HIS117 LEU118 TRP119 GLU120 VAL121 ASN122 PRO123 LYS124 LEU125 ARG126 VAL127 GLU128 ILE129 ILE130 SER131 PHE132 GLU133 LYS134 GLU135 LEU136 LEU137 LYS138 GLU139 PHE140 PRO141 ILE142 LEU143 PRO144 GLU145 PRO146 TYR147 ARG148 GLU149 ILE150 HIS151 GLU152 PHE153 LEU154 LEU155 GLU156 ARG157 VAL158 PRO159 GLU160 TYR161 GLU162 GLY163 GLU164 ARG165 LEU166 SER167 LEU168 LYS169 VAL170 LEU171 LEU172 GLY173 ASP174 ALA175 ARG176 LYS177 ARG178 ILE179 LYS180 GLU181 VAL182 GLU183 ASN184 PHE185 LYS186 ALA187 ASP188 ALA189 VAL190 PHE191 HIS192 ASP193 ALA194 PHE195 SER196 PRO197 TYR198 LYS199 ASN200 PRO201 GLU202 LEU203 TRP204 THR205 LEU206 ASP207 PHE208 LEU209 SER210 LEU211 ILE212 LYS213 GLU214 ARG215 ILE216 ASP217 GLU218 LYS219 GLY220 TYR221 TRP222 VAL223 SER224 TYR225 SER226 SER227 SER228 LEU229 SER230 VAL231 ARG232 LYS233 SER234 LEU235 LEU236 THR237 LEU238 GLY239 PHE240 LYS241 VAL242 GLY243 SER244 SER245 ARG246 GLU247 ILE248 ARG252 LYS253 GLY254 THR255 VAL256 ALA257 SER258 LEU259 LYS260 ALA261 PRO262 VAL263 PRO264 PRO265 MSE266 GLU267 GLU268 ASN269 GLU270 VAL271 ARG272 LYS273 LEU274 VAL275 LEU276 SER277 PRO278 PHE279 ALA280 VAL281 PRO282 MSE283 ARG284 ASP285 GLU286 LYS287 LEU288 ASP289 LYS290 GLU291 PRO292 LEU293 GLU294 ILE295 LEU296 ILE297 ASP298 TYR299 LEU300 LEU301 LYS302 VAL303 TYR304 LYS305 ILE306 SER307
Unit 2 LYS2 ARG3 GLU4 GLU5 TYR6 LEU7 LYS8 ASN9 TYR10 LEU11 GLU12 SER13 TYR14 LEU15 ARG16 LYS17 LYS18 GLU19 VAL20 SER21 LEU22 THR23 GLU24 GLU25 GLU26 PHE27 ASN28 VAL29 ILE30 LEU31 ARG32 GLU33 PHE34 LEU35 ARG36 PHE37 ALA38 TYR39 ASN40 PRO41 GLU42 GLU43 SER44 GLY45 GLN46 GLU47 ILE48 ALA49 ASP50 THR51 ALA52 ASP53 GLY54 SER55 LYS56 THR57 LEU58 ILE59 HIS60 LYS61 THR62 TYR63 GLY64 GLU65 PRO66 TYR67 HIS68 SER69 GLN70 THR71 ALA72 GLY73 ALA74 ILE75 ARG76 GLU77 SER78 LEU79 TYR80 LYS81 PHE82 VAL83 ARG84 PRO85 SER86 ARG87 ILE88 LEU89 GLU90 LYS91 ALA92 LYS93 GLU94 ARG95 LYS96 VAL97 ILE98 ARG99 ILE100 LEU101 ASP102 VAL103 GLY104 PHE105 GLY106 LEU107 GLY108 TYR109 ASN110 LEU111 ALA112 VAL113 ALA114 LEU115 LYS116 HIS117 LEU118 TRP119 GLU120 VAL121 ASN122 PRO123 LYS124 LEU125 ARG126 VAL127 GLU128 ILE129 ILE130 SER131 PHE132 GLU133 LYS134 GLU135 LEU136 LEU137 LYS138 GLU139 PHE140 PRO141 ILE142 LEU143 PRO144 GLU145 PRO146 TYR147 ARG148 GLU149 ILE150 HIS151 GLU152 PHE153 LEU154 LEU155 GLU156 ARG157 VAL158 PRO159 GLU160 TYR161 GLU162 GLY163 GLU164 ARG165 LEU166 SER167 LEU168 LYS169 VAL170 LEU171 LEU172 GLY173 ASP174 ALA175 ARG176 LYS177 ARG178 ILE179 LYS180 GLU181 VAL182 GLU183 ASN184 PHE185 LYS186 ALA187 ASP188 ALA189 VAL190 PHE191 HIS192 ASP193 ALA194 PHE195 SER196 PRO197 TYR198 LYS199 ASN200 PRO201 GLU202 LEU203 TRP204 THR205 LEU206 ASP207 PHE208 LEU209 SER210 LEU211 ILE212 LYS213 GLU214 ARG215 ILE216 ASP217 GLU218 LYS219 GLY220 TYR221 TRP222 VAL223 SER224 TYR225 SER226 SER227 SER228 LEU229 SER230 VAL231 ARG232 LYS233 SER234 LEU235 LEU236 THR237 LEU238 GLY239 PHE240 LYS241 VAL242 GLY243 SER244 SER245 ARG246 GLU247 ILE248 GLY249 ARG250 LYS251 ARG252 LYS253 GLY254 THR255 VAL256 ALA257 SER258 LEU259 LYS260 ALA261 PRO262 VAL263 PRO264 PRO265 MSE266 GLU267 GLU268 ASN269 GLU270 VAL271 ARG272 LYS273 LEU274 VAL275 LEU276 SER277 PRO278 PHE279 ALA280 VAL281 PRO282 MSE283 ARG284 ASP285 GLU286 LYS287 LEU288 ASP289 LYS290 GLU291 PRO292 LEU293 GLU294 ILE295 LEU296 ILE297 ASP298 TYR299 LEU300 LEU301 LYS302 VAL303 TYR304 LYS305 ILE306
Unit 3 LYS2 ARG3 GLU4 GLU5 TYR6 LEU7 LYS8 ASN9 TYR10 LEU11 GLU12 SER13 TYR14 LEU15 ARG16 LYS17 LYS18 GLU19 VAL20 SER21 LEU22 THR23 GLU24 GLU25 GLU26 PHE27 ASN28 VAL29 ILE30 LEU31 ARG32 GLU33 PHE34 LEU35 ARG36 PHE37 ALA38 TYR39 ASN40 PRO41 GLU42 GLU43 SER44 GLY45 GLN46 GLU47 ILE48 ALA49 ASP50 THR51 ALA52 ASP53 GLY54 SER55 LYS56 THR57 LEU58 ILE59 HIS60 LYS61 THR62 TYR63 GLY64 GLU65 PRO66 TYR67 HIS68 SER69 GLN70 THR71 ALA72 GLY73 ALA74 ILE75 ARG76 GLU77 SER78 LEU79 TYR80 LYS81 PHE82 VAL83 ARG84 PRO85 SER86 ARG87 ILE88 LEU89 GLU90 LYS91 ALA92 LYS93 GLU94 ARG95 LYS96 VAL97 ILE98 ARG99 ILE100 LEU101 ASP102 VAL103 GLY104 PHE105 GLY106 LEU107 GLY108 TYR109 ASN110 LEU111 ALA112 VAL113 ALA114 LEU115 LYS116 HIS117 LEU118 TRP119 GLU120 VAL121 ASN122 PRO123 LYS124 LEU125 ARG126 VAL127 GLU128 ILE129 ILE130 SER131 PHE132 GLU133 LYS134 GLU135 LEU136 LEU137 LYS138 GLU139 PHE140 PRO141 ILE142 LEU143 PRO144 GLU145 PRO146 TYR147 ARG148 GLU149 ILE150 HIS151 GLU152 PHE153 LEU154 LEU155 GLU156 ARG157 VAL158 PRO159 GLU160 TYR161 GLU162 GLY163 GLU164 ARG165 LEU166 SER167 LEU168 LYS169 VAL170 LEU171 LEU172 GLY173 ASP174 ALA175 ARG176 LYS177 ARG178 ILE179 LYS180 GLU181 VAL182 GLU183 ASN184 PHE185 LYS186 ALA187 ASP188 ALA189 VAL190 PHE191 HIS192 ASP193 ALA194 PHE195 SER196 PRO197 TYR198 LYS199 ASN200 PRO201 GLU202 LEU203 TRP204 THR205 LEU206 ASP207 PHE208 LEU209 SER210 LEU211 ILE212 LYS213 GLU214 ARG215 ILE216 ASP217 GLU218 LYS219 GLY220 TYR221 TRP222 VAL223 SER224 TYR225 SER226 SER227 SER228 LEU229 SER230 VAL231 ARG232 LYS233 SER234 LEU235 LEU236 THR237 LEU238 GLY239 PHE240 LYS241 VAL242 GLY243 SER244 SER245 ARG246 GLU247 ILE248 GLY249 ARG250 LYS251 ARG252 LYS253 GLY254 THR255 VAL256 ALA257 SER258 LEU259 LYS260 ALA261 PRO262 VAL263 PRO264 PRO265 MSE266 GLU267 GLU268 ASN269 GLU270 VAL271 ARG272 LYS273 LEU274 VAL275 LEU276 SER277 PRO278 PHE279 ALA280 VAL281 PRO282 MSE283 ARG284 ASP285 GLU286 LYS287 LEU288 ASP289 LYS290 GLU291 PRO292 LEU293 GLU294 ILE295 LEU296 ILE297 ASP298 TYR299 LEU300 LEU301 LYS302 VAL303 TYR304 LYS305 ILE306
Unit 4 LYS2 ARG3 GLU4 GLU5 TYR6 LEU7 LYS8 ASN9 TYR10 LEU11 GLU12 SER13 TYR14 LEU15 ARG16 LYS17 LYS18 GLU19 VAL20 SER21 LEU22 THR23 GLU24 GLU25 GLU26 PHE27 ASN28 VAL29 ILE30 LEU31 ARG32 GLU33 PHE34 LEU35 ARG36 PHE37 ALA38 TYR39 ASN40 PRO41 GLU42 GLU43 SER44 GLY45 GLN46 GLU47 ILE48 ALA49 ASP50 THR51 ALA52 ASP53 GLY54 SER55 LYS56 THR57 LEU58 ILE59 HIS60 LYS61 THR62 TYR63 GLY64 GLU65 PRO66 TYR67 HIS68 SER69 GLN70 THR71 ALA72 GLY73 ALA74 ILE75 ARG76 GLU77 SER78 LEU79 TYR80 LYS81 PHE82 VAL83 ARG84 PRO85 SER86 ARG87 ILE88 LEU89 GLU90 LYS91 ALA92 LYS93 GLU94 ARG95 LYS96 VAL97 ILE98 ARG99 ILE100 LEU101 ASP102 VAL103 GLY104 PHE105 GLY106 LEU107 GLY108 TYR109 ASN110 LEU111 ALA112 VAL113 ALA114 LEU115 LYS116 HIS117 LEU118 TRP119 GLU120 VAL121 ASN122 PRO123 LYS124 LEU125 ARG126 VAL127 GLU128 ILE129 ILE130 SER131 PHE132 GLU133 LYS134 GLU135 LEU136 LEU137 LYS138 GLU139 PHE140 PRO141 ILE142 LEU143 PRO144 GLU145 PRO146 TYR147 ARG148 GLU149 ILE150 HIS151 GLU152 PHE153 LEU154 LEU155 GLU156 ARG157 VAL158 PRO159 GLU160 TYR161 GLU162 GLY163 GLU164 ARG165 LEU166 SER167 LEU168 LYS169 VAL170 LEU171 LEU172 GLY173 ASP174 ALA175 ARG176 LYS177 ARG178 ILE179 LYS180 GLU181 VAL182 GLU183 ASN184 PHE185 LYS186 ALA187 ASP188 ALA189 VAL190 PHE191 HIS192 ASP193 ALA194 PHE195 SER196 PRO197 TYR198 LYS199 ASN200 PRO201 GLU202 LEU203 TRP204 THR205 LEU206 ASP207 PHE208 LEU209 SER210 LEU211 ILE212 LYS213 GLU214 ARG215 ILE216 ASP217 GLU218 LYS219 GLY220 TYR221 TRP222 VAL223 SER224 TYR225 SER226 SER227 SER228 LEU229 SER230 VAL231 ARG232 LYS233 SER234 LEU235 LEU236 THR237 LEU238 GLY239 PHE240 LYS241 VAL242 GLY243 SER244 SER245 ARG246 GLU247 ILE248 GLY249 ARG250 LYS251 ARG252 LYS253 GLY254 THR255 VAL256 ALA257 SER258 LEU259 LYS260 ALA261 PRO262 VAL263 PRO264 PRO265 MSE266 GLU267 GLU268 ASN269 GLU270 VAL271 ARG272 LYS273 LEU274 VAL275 LEU276 SER277 PRO278 PHE279 ALA280 VAL281 PRO282 MSE283 ARG284 ASP285 GLU286 LYS287 LEU288 ASP289 LYS290 GLU291 PRO292 LEU293 GLU294 ILE295 LEU296 ILE297 ASP298 TYR299 LEU300 LEU301 LYS302 VAL303 TYR304 LYS305 ILE306 SER307
Ligands
Unit 5 SAM501
Unit 6 SAM401 BEN402
Unit 7 SAM401 BEN402
Unit 8 SAM401
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany