3VYT - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE HYPC-HYPD-HYPE COMPLEX (FORM I INWA
• Keywords: [NIFE] HYDROGENASE MATURATION, METAL BINDING PROTEIN-TRANSFE COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3VYT	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	HYDROGENASE EXPRESSION/FORMATION PROTEIN HYPC	A	52	387	0
2	Protein	HYDROGENASE EXPRESSION/FORMATION PROTEIN HYPD	B	368	2834	0
3	Protein	HYDROGENASE EXPRESSION/FORMATION PROTEIN HYPE	C	336	2452	0
4	Ligand	HYDROGENASE EXPRESSION/FORMATION PROTEIN HYPD	B	1	0	8
5	Ligand	HYDROGENASE EXPRESSION/FORMATION PROTEIN HYPE	C	6	0	6
6	Water			153	0	153
total				916	5673	167

Proteins

Unit 1	LEU 3 ALA 4 VAL 5 PRO 6 GLY 7 LYS 8 VAL 9 ILE 10 GLU 11 VAL 12 ASN 13 GLY 14 PRO 15 VAL 16 ALA 17 VAL 18 VAL 19 ASP 20 PHE 21 GLY 22 GLY 23 VAL 24 LYS 25 ARG 26 GLU 27 VAL 28 ARG 29 LEU 30 ASP 31 LEU 32 MET 33 PRO 34 ASP 35 THR 36 LYS 37 PRO 38 GLY 39 ASP 40 TRP 41 VAL 42 ILE 43 VAL 44 HIS 45 THR 46 GLY 47 PHE 48 ALA 49 ILE 50 GLU 51 LYS 52 LEU 53 ASP 54
Unit 2	PRO 4 PHE 5 GLU 6 ALA 7 TYR 8 ARG 9 SER 10 ARG 11 GLU 12 VAL 13 ALA 14 MET 15 LYS 16 LEU 17 VAL 18 GLU 19 LYS 20 ILE 21 ARG 22 GLU 23 GLU 24 ALA 25 LYS 26 THR 27 LEU 28 ASP 29 GLY 30 GLU 31 ILE 32 ARG 33 ILE 34 MET 35 HIS 36 VAL 37 CYS 38 GLY 39 THR 40 HIS 41 GLU 42 ASP 43 THR 44 VAL 45 THR 46 ARG 47 HIS 48 GLY 49 ILE 50 ARG 51 SER 52 LEU 53 LEU 54 PRO 55 GLU 56 ASN 57 VAL 58 LYS 59 VAL 60 VAL 61 SER 62 GLY 63 PRO 64 GLY 65 CYS 66 PRO 67 VAL 68 CYS 69 ILE 70 THR 71 PRO 72 VAL 73 GLU 74 ASP 75 ILE 76 VAL 77 ALA 78 MET 79 GLN 80 LEU 81 ILE 82 MET 83 ARG 84 LYS 85 ALA 86 ARG 87 GLU 88 GLU 89 GLY 90 GLU 91 GLU 92 ILE 93 ILE 94 LEU 95 THR 96 THR 97 PHE 98 GLY 99 ASP 100 MET 101 TYR 102 LYS 103 ILE 104 PRO 105 THR 106 PRO 107 MET 108 GLY 109 SER 110 PHE 111 ALA 112 ASP 113 LEU 114 LYS 115 SER 116 GLU 117 GLY 118 PHE 119 ASP 120 VAL 121 ARG 122 ILE 123 VAL 124 TYR 125 GLY 126 ILE 127 PHE 128 ASP 129 THR 130 TYR 131 ARG 132 ILE 133 ALA 134 LYS 135 GLU 136 ASN 137 PRO 138 ASP 139 LYS 140 THR 141 VAL 142 VAL 143 HIS 144 PHE 145 SER 146 PRO 147 GLY 148 PHE 149 GLU 150 THR 151 THR 152 THR 153 ALA 154 PRO 155 ALA 156 ALA 157 GLY 158 MET 159 LEU 160 ASN 161 VAL 162 ALA 163 ALA 164 GLN 165 GLU 166 GLU 167 LEU 168 GLU 169 ASN 170 PHE 171 LYS 172 ILE 173 TYR 174 SER 175 VAL 176 HIS 177 ARG 178 LEU 179 THR 180 PRO 181 PRO 182 ALA 183 VAL 184 GLU 185 VAL 186 LEU 187 LEU 188 LYS 189 GLN 190 GLY 191 THR 192 VAL 193 PHE 194 GLN 195 GLY 196 LEU 197 ILE 198 ALA 199 PRO 200 GLY 201 HIS 202 VAL 203 SER 204 THR 205 ILE 206 ILE 207 GLY 208 VAL 209 LYS 210 GLY 211 TRP 212 GLU 213 TYR 214 LEU 215 THR 216 GLU 217 LYS 218 TYR 219 GLY 220 ILE 221 PRO 222 GLN 223 VAL 224 VAL 225 ALA 226 GLY 227 PHE 228 GLU 229 PRO 230 ASN 231 ASP 232 VAL 233 LEU 234 MET 235 ALA 236 ILE 237 LEU 238 MET 239 LEU 240 ILE 241 ARG 242 MET 243 TYR 244 LYS 245 GLU 246 GLY 247 GLU 248 ALA 249 ARG 250 ILE 251 ILE 252 ASN 253 GLU 254 TYR 255 GLU 256 ARG 257 ALA 258 VAL 259 LYS 260 TYR 261 GLU 262 GLY 263 ASN 264 VAL 265 VAL 266 ALA 267 GLN 268 LYS 269 MET 270 ILE 271 ASP 272 LYS 273 PHE 274 PHE 275 GLU 276 VAL 277 VAL 278 ASP 279 ALA 280 LYS 281 TRP 282 ARG 283 ALA 284 LEU 285 GLY 286 VAL 287 PHE 288 PRO 289 LYS 290 SER 291 GLY 292 LEU 293 GLU 294 LEU 295 ARG 296 LYS 297 GLU 298 TRP 299 LYS 300 ASP 301 PHE 302 GLU 303 ILE 304 ARG 305 SER 306 PHE 307 TYR 308 LYS 309 VAL 310 GLU 311 VAL 312 PRO 313 LYS 314 ASN 315 LEU 316 PRO 317 ASP 318 LEU 319 GLU 320 LYS 321 GLY 322 CYS 323 ARG 324 CYS 325 GLY 326 ALA 327 VAL 328 LEU 329 ARG 330 GLY 331 LEU 332 ALA 333 LEU 334 PRO 335 THR 336 ASP 337 CYS 338 PRO 339 LEU 340 PHE 341 GLY 342 LYS 343 THR 344 CYS 345 THR 346 PRO 347 ARG 348 HIS 349 PRO 350 VAL 351 GLY 352 PRO 353 CYS 354 MET 355 VAL 356 SER 357 TYR 358 GLU 359 GLY 360 THR 361 CYS 362 GLN 363 ILE 364 PHE 365 TYR 366 LYS 367 TYR 368 GLY 369 VAL 370 LEU 371
Unit 3	GLU 3 LYS 4 ILE 5 LYS 6 LEU 7 GLU 8 HIS 9 GLY 10 ALA 11 GLY 12 GLY 13 GLU 14 ILE 15 MET 16 GLU 17 GLU 18 LEU 19 LEU 20 ARG 21 ASP 22 VAL 23 ILE 24 LEU 25 LYS 26 THR 27 LEU 28 THR 29 LEU 30 LYS 31 SER 32 ALA 33 GLY 34 GLY 35 ILE 36 GLY 37 LEU 38 ASP 39 ALA 40 LEU 41 ASP 42 ASP 43 GLY 44 ALA 45 THR 46 ILE 47 PRO 48 PHE 49 GLY 50 ASP 51 LYS 52 HIS 53 ILE 54 VAL 55 PHE 56 THR 57 ILE 58 ASP 59 GLY 60 HIS 61 THR 62 VAL 63 LYS 64 PRO 65 LEU 66 PHE 67 PHE 68 PRO 69 GLY 70 GLY 71 ASP 72 ILE 73 GLY 74 ARG 75 LEU 76 ALA 77 VAL 78 SER 79 GLY 80 THR 81 VAL 82 ASN 83 ASP 84 LEU 85 ALA 86 VAL 87 MET 88 GLY 89 ALA 90 GLU 91 PRO 92 ILE 93 ALA 94 LEU 95 ALA 96 ASN 97 SER 98 MET 99 ILE 100 ILE 101 GLY 102 GLU 103 GLY 104 LEU 105 ASP 106 MET 107 GLU 108 VAL 109 LEU 110 LYS 111 ARG 112 VAL 113 LEU 114 LYS 115 SER 116 MET 117 ASP 118 GLU 119 THR 120 ALA 121 ARG 122 GLU 123 VAL 124 PRO 125 VAL 126 PRO 127 ILE 128 VAL 129 THR 130 GLY 131 ASP 132 THR 133 LYS 134 VAL 135 VAL 136 GLU 137 ASP 138 LYS 139 ILE 140 GLU 141 MET 142 PHE 143 VAL 144 ILE 145 THR 146 ALA 147 GLY 148 ILE 149 GLY 150 ILE 151 ALA 152 GLU 153 HIS 154 PRO 155 VAL 156 SER 157 ASP 158 ALA 159 GLY 160 ALA 161 LYS 162 VAL 163 GLY 164 ASP 165 ALA 166 VAL 167 LEU 168 VAL 169 SER 170 GLY 171 THR 172 ILE 173 GLY 174 ASP 175 HIS 176 GLY 177 ILE 178 ALA 179 LEU 180 MET 181 SER 182 HIS 183 ARG 184 GLU 185 GLY 186 ILE 187 ALA 188 PHE 189 GLU 190 THR 191 GLU 192 LEU 193 LYS 194 SER 195 ASP 196 VAL 197 ALA 198 PRO 199 ILE 200 TRP 201 ASP 202 VAL 203 VAL 204 LYS 205 ALA 206 VAL 207 ALA 208 GLU 209 THR 210 ILE 211 GLY 212 TRP 213 GLU 214 ASN 215 ILE 216 HIS 217 ALA 218 MET 219 LYS 220 ASP 221 PRO 222 THR 223 ARG 224 ALA 225 GLY 226 LEU 227 SER 228 ASN 229 ALA 230 LEU 231 ASN 232 GLU 233 ILE 234 ALA 235 ARG 236 LYS 237 SER 238 ASN 239 VAL 240 GLY 241 ILE 242 LEU 243 VAL 244 ARG 245 GLU 246 ALA 247 ASP 248 ILE 249 PRO 250 ILE 251 ARG 252 PRO 253 GLU 254 VAL 255 ARG 256 ALA 257 ALA 258 SER 259 GLU 260 MET 261 LEU 262 GLY 263 ILE 264 SER 265 PRO 266 TYR 267 ASP 268 VAL 269 ALA 270 ASN 271 GLU 272 GLY 273 LYS 274 VAL 275 VAL 276 MET 277 VAL 278 VAL 279 ALA 280 ARG 281 GLU 282 TYR 283 ALA 284 GLU 285 GLU 286 ALA 287 LEU 288 GLU 289 ALA 290 MET 291 ARG 292 LYS 293 THR 294 GLU 295 LYS 296 GLY 297 ARG 298 ASN 299 ALA 300 ALA 301 ILE 302 ILE 303 GLY 304 GLU 305 VAL 306 ILE 307 ALA 308 ASP 309 TYR 310 ARG 311 GLY 312 LYS 313 VAL 314 LEU 315 LEU 316 GLU 317 THR 318 GLY 319 ILE 320 GLY 321 GLY 322 LYS 323 ARG 324 PHE 325 MET 326 GLU 327 PRO 328 PRO 329 GLU 330 GLY 331 ASP 332 PRO 333 VAL 334 PRO 335 ARG 336 ILE 337 CYS 338

Ligands

Unit 4	SF4 501
Unit 5	MG 601 MG 602 MG 603 CL 604 MG 605 MG 606