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Sequence, Chains, Asymmetric and Biological Units

Title THE COMPLEX BETWEEN T36-5 TCR AND HLA-A24 BOUND TO HIV-1 NEF PEPTIDE
Keywords HIV-1, NEF, IMMUNE SYSTEM, HLA-A24, T CELL RECEPTOR, MHC CLA IMMUNOGLOBURIN DOMAIN, TCR, MHC, IMMUNE RESPONSE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3VXU     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    A 274 2222 0
2  Protein   BETA-2-MICROGLOBULIN  B 99 829 0
3  Protein   10-MER PEPTIDE FROM PROTEIN NEF  C 10 91 0
4  Protein   T36-5 TCR ALPHA CHAIN  D 199 1553 0
5  Protein   T36-5 TCR BETA CHAIN  E 241 1933 0
6  Protein    F 274 2222 0
7  Protein   BETA-2-MICROGLOBULIN  G 99 829 0
8  Protein   10-MER PEPTIDE FROM PROTEIN NEF  H 10 91 0
9  Protein   T36-5 TCR ALPHA CHAIN  I 199 1553 0
10  Protein   T36-5 TCR BETA CHAIN  J 241 1933 0
total       1646 13256 0
Proteins
Unit 1 GLY1 SER2 HIS3 SER4 MET5 ARG6 TYR7 PHE8 SER9 THR10 SER11 VAL12 SER13 ARG14 PRO15 GLY16 ARG17 GLY18 GLU19 PRO20 ARG21 PHE22 ILE23 ALA24 VAL25 GLY26 TYR27 VAL28 ASP29 ASP30 THR31 GLN32 PHE33 VAL34 ARG35 PHE36 ASP37 SER38 ASP39 ALA40 ALA41 SER42 GLN43 ARG44 MET45 GLU46 PRO47 ARG48 ALA49 PRO50 TRP51 ILE52 GLU53 GLN54 GLU55 GLY56 PRO57 GLU58 TYR59 TRP60 ASP61 GLU62 GLU63 THR64 GLY65 LYS66 VAL67 LYS68 ALA69 HIS70 SER71 GLN72 THR73 ASP74 ARG75 GLU76 ASN77 LEU78 ARG79 ILE80 ALA81 LEU82 ARG83 TYR84 TYR85 ASN86 GLN87 SER88 GLU89 ALA90 GLY91 SER92 HIS93 THR94 LEU95 GLN96 MET97 MET98 PHE99 GLY100 CYS101 ASP102 VAL103 GLY104 SER105 ASP106 GLY107 ARG108 PHE109 LEU110 ARG111 GLY112 TYR113 HIS114 GLN115 TYR116 ALA117 TYR118 ASP119 GLY120 LYS121 ASP122 TYR123 ILE124 ALA125 LEU126 LYS127 GLU128 ASP129 LEU130 ARG131 SER132 TRP133 THR134 ALA135 ALA136 ASP137 MET138 ALA139 ALA140 GLN141 ILE142 THR143 LYS144 ARG145 LYS146 TRP147 GLU148 ALA149 ALA150 HIS151 VAL152 ALA153 GLU154 GLN155 GLN156 ARG157 ALA158 TYR159 LEU160 GLU161 GLY162 THR163 CYS164 VAL165 ASP166 GLY167 LEU168 ARG169 ARG170 TYR171 LEU172 GLU173 ASN174 GLY175 LYS176 GLU177 THR178 LEU179 GLN180 ARG181 THR182 ASP183 PRO184 PRO185 LYS186 THR187 HIS188 MET189 THR190 HIS191 HIS192 PRO193 ILE194 SER195 ASP196 HIS197 GLU198 ALA199 THR200 LEU201 ARG202 CYS203 TRP204 ALA205 LEU206 GLY207 PHE208 TYR209 PRO210 ALA211 GLU212 ILE213 THR214 LEU215 THR216 TRP217 GLN218 ARG219 ASP220 GLY221 GLU222 ASP223 GLN224 THR225 GLN226 ASP227 THR228 GLU229 LEU230 VAL231 GLU232 THR233 ARG234 PRO235 ALA236 GLY237 ASP238 GLY239 THR240 PHE241 GLN242 LYS243 TRP244 ALA245 ALA246 VAL247 VAL248 VAL249 PRO250 SER251 GLY252 GLU253 GLU254 GLN255 ARG256 TYR257 THR258 CYS259 HIS260 VAL261 GLN262 HIS263 GLU264 GLY265 LEU266 PRO267 LYS268 PRO269 LEU270 THR271 LEU272 ARG273 TRP274
Unit 2 ILE1 GLN2 ARG3 THR4 PRO5 LYS6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 ALA15 GLU16 ASN17 GLY18 LYS19 SER20 ASN21 PHE22 LEU23 ASN24 CYS25 TYR26 VAL27 SER28 GLY29 PHE30 HIS31 PRO32 SER33 ASP34 ILE35 GLU36 VAL37 ASP38 LEU39 LEU40 LYS41 ASN42 GLY43 GLU44 ARG45 ILE46 GLU47 LYS48 VAL49 GLU50 HIS51 SER52 ASP53 LEU54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 LEU64 LEU65 TYR66 TYR67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 LYS75 ASP76 GLU77 TYR78 ALA79 CYS80 ARG81 VAL82 ASN83 HIS84 VAL85 THR86 LEU87 SER88 GLN89 PRO90 LYS91 ILE92 VAL93 LYS94 TRP95 ASP96 ARG97 ASP98 MET99
Unit 3 ARG1 PHE2 PRO3 LEU4 THR5 PHE6 GLY7 TRP8 CYS9 PHE10
Unit 4 LYS2 GLU3 VAL4 GLU5 GLN6 ASN7 SER8 GLY9 PRO10 LEU11 SER12 VAL13 PRO14 GLU15 GLY16 ALA17 ILE18 ALA19 SER20 LEU21 ASN22 CYS23 THR24 TYR25 SER26 ASP27 ARG28 GLY29 SER30 GLN31 SER32 PHE33 PHE34 TRP35 TYR36 ARG37 GLN38 TYR39 SER40 GLY41 LYS42 SER43 PRO44 GLU45 LEU46 ILE47 MET48 SER49 ILE50 TYR51 SER52 ASN53 GLY54 ASP55 LYS56 GLU57 ASP58 GLY59 ARG60 PHE61 THR62 ALA63 GLN64 LEU65 ASN66 LYS67 ALA68 SER69 GLN70 TYR71 VAL72 SER73 LEU74 LEU75 ILE76 ARG77 ASP78 SER79 GLN80 PRO81 SER82 ASP83 SER84 ALA85 THR86 TYR87 LEU88 TRP89 GLY90 THR91 TYR92 ASN93 GLN94 GLY95 GLY96 LYS97 LEU98 ILE99 PHE100 GLY101 GLN102 GLY103 THR104 GLU105 LEU106 SER107 VAL108 LYS109 PRO110 ASN111 ILE112 GLN113 ASN114 PRO115 ASP116 PRO117 ALA118 VAL119 TYR120 GLN121 LEU122 ARG123 ASP124 SER125 LYS126 SER127 SER128 ASP129 LYS130 SER131 VAL132 CYS133 LEU134 PHE135 THR136 ASP137 PHE138 ASP139 SER140 GLN141 THR142 ASN143 VAL144 SER145 GLN146 SER147 LYS148 ASP149 SER150 ASP151 VAL152 TYR153 ILE154 THR155 ASP156 LYS157 CYS158 VAL159 LEU160 ASP161 MET162 ARG163 SER164 MET165 ASP166 PHE167 LYS168 SER169 ASN170 SER171 ALA172 VAL173 ALA174 TRP175 SER176 ASN177 LYS178 SER179 ASP180 PHE181 ALA182 CYS183 ALA184 ASN185 ALA186 PHE187 ASN188 ASN189 SER190 ILE191 ILE192 PRO193 GLU194 ASP195 THR196 PHE197 PHE198 PRO199 SER200
Unit 5 GLU1 ALA2 GLN3 VAL4 THR5 GLN6 ASN7 PRO8 ARG9 TYR10 LEU11 ILE12 THR13 VAL14 THR15 GLY16 LYS17 LYS18 LEU19 THR20 VAL21 THR22 CYS23 SER24 GLN25 ASN26 MET27 ASN28 HIS29 GLU30 TYR31 MET32 SER33 TRP34 TYR35 ARG36 GLN37 ASP38 PRO39 GLY40 LEU41 GLY42 LEU43 ARG44 GLN45 ILE46 TYR47 TYR48 SER49 MET50 ASN51 VAL52 GLU53 VAL54 THR55 ASP56 LYS57 GLY58 ASP59 VAL60 PRO61 GLU62 GLY63 TYR64 LYS65 VAL66 SER67 ARG68 LYS69 GLU70 LYS71 ARG72 ASN73 PHE74 PRO75 LEU76 ILE77 LEU78 GLU79 SER80 PRO81 SER82 PRO83 ASN84 GLN85 THR86 SER87 LEU88 TYR89 PHE90 CYS91 ALA92 SER93 SER94 GLY95 ALA96 SER97 HIS98 GLU99 GLN100 TYR101 PHE102 GLY103 PRO104 GLY105 THR106 ARG107 LEU108 THR109 VAL110 THR111 GLU112 ASP113 LEU114 LYS115 ASN116 VAL117 PHE118 PRO119 PRO120 GLU121 VAL122 ALA123 VAL124 PHE125 GLU126 PRO127 SER128 GLU129 ALA130 GLU131 ILE132 SER133 HIS134 THR135 GLN136 LYS137 ALA138 THR139 LEU140 VAL141 CYS142 LEU143 ALA144 THR145 GLY146 PHE147 TYR148 PRO149 ASP150 HIS151 VAL152 GLU153 LEU154 SER155 TRP156 TRP157 VAL158 ASN159 GLY160 LYS161 GLU162 VAL163 HIS164 SER165 GLY166 VAL167 CYS168 THR169 ASP170 PRO171 GLN172 PRO173 LEU174 LYS175 GLU176 GLN177 PRO178 ALA179 LEU180 ASN181 ASP182 SER183 ARG184 TYR185 ALA186 LEU187 SER188 SER189 ARG190 LEU191 ARG192 VAL193 SER194 ALA195 THR196 PHE197 TRP198 GLN199 ASN200 PRO201 ARG202 ASN203 HIS204 PHE205 ARG206 CYS207 GLN208 VAL209 GLN210 PHE211 TYR212 GLY213 LEU214 SER215 GLU216 ASN217 ASP218 GLU219 TRP220 THR221 GLN222 ASP223 ARG224 ALA225 LYS226 PRO227 VAL228 THR229 GLN230 ILE231 VAL232 SER233 ALA234 GLU235 ALA236 TRP237 GLY238 ARG239 ALA240 ASP241
Unit 6 GLY1 SER2 HIS3 SER4 MET5 ARG6 TYR7 PHE8 SER9 THR10 SER11 VAL12 SER13 ARG14 PRO15 GLY16 ARG17 GLY18 GLU19 PRO20 ARG21 PHE22 ILE23 ALA24 VAL25 GLY26 TYR27 VAL28 ASP29 ASP30 THR31 GLN32 PHE33 VAL34 ARG35 PHE36 ASP37 SER38 ASP39 ALA40 ALA41 SER42 GLN43 ARG44 MET45 GLU46 PRO47 ARG48 ALA49 PRO50 TRP51 ILE52 GLU53 GLN54 GLU55 GLY56 PRO57 GLU58 TYR59 TRP60 ASP61 GLU62 GLU63 THR64 GLY65 LYS66 VAL67 LYS68 ALA69 HIS70 SER71 GLN72 THR73 ASP74 ARG75 GLU76 ASN77 LEU78 ARG79 ILE80 ALA81 LEU82 ARG83 TYR84 TYR85 ASN86 GLN87 SER88 GLU89 ALA90 GLY91 SER92 HIS93 THR94 LEU95 GLN96 MET97 MET98 PHE99 GLY100 CYS101 ASP102 VAL103 GLY104 SER105 ASP106 GLY107 ARG108 PHE109 LEU110 ARG111 GLY112 TYR113 HIS114 GLN115 TYR116 ALA117 TYR118 ASP119 GLY120 LYS121 ASP122 TYR123 ILE124 ALA125 LEU126 LYS127 GLU128 ASP129 LEU130 ARG131 SER132 TRP133 THR134 ALA135 ALA136 ASP137 MET138 ALA139 ALA140 GLN141 ILE142 THR143 LYS144 ARG145 LYS146 TRP147 GLU148 ALA149 ALA150 HIS151 VAL152 ALA153 GLU154 GLN155 GLN156 ARG157 ALA158 TYR159 LEU160 GLU161 GLY162 THR163 CYS164 VAL165 ASP166 GLY167 LEU168 ARG169 ARG170 TYR171 LEU172 GLU173 ASN174 GLY175 LYS176 GLU177 THR178 LEU179 GLN180 ARG181 THR182 ASP183 PRO184 PRO185 LYS186 THR187 HIS188 MET189 THR190 HIS191 HIS192 PRO193 ILE194 SER195 ASP196 HIS197 GLU198 ALA199 THR200 LEU201 ARG202 CYS203 TRP204 ALA205 LEU206 GLY207 PHE208 TYR209 PRO210 ALA211 GLU212 ILE213 THR214 LEU215 THR216 TRP217 GLN218 ARG219 ASP220 GLY221 GLU222 ASP223 GLN224 THR225 GLN226 ASP227 THR228 GLU229 LEU230 VAL231 GLU232 THR233 ARG234 PRO235 ALA236 GLY237 ASP238 GLY239 THR240 PHE241 GLN242 LYS243 TRP244 ALA245 ALA246 VAL247 VAL248 VAL249 PRO250 SER251 GLY252 GLU253 GLU254 GLN255 ARG256 TYR257 THR258 CYS259 HIS260 VAL261 GLN262 HIS263 GLU264 GLY265 LEU266 PRO267 LYS268 PRO269 LEU270 THR271 LEU272 ARG273 TRP274
Unit 7 ILE1 GLN2 ARG3 THR4 PRO5 LYS6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 ALA15 GLU16 ASN17 GLY18 LYS19 SER20 ASN21 PHE22 LEU23 ASN24 CYS25 TYR26 VAL27 SER28 GLY29 PHE30 HIS31 PRO32 SER33 ASP34 ILE35 GLU36 VAL37 ASP38 LEU39 LEU40 LYS41 ASN42 GLY43 GLU44 ARG45 ILE46 GLU47 LYS48 VAL49 GLU50 HIS51 SER52 ASP53 LEU54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 LEU64 LEU65 TYR66 TYR67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 LYS75 ASP76 GLU77 TYR78 ALA79 CYS80 ARG81 VAL82 ASN83 HIS84 VAL85 THR86 LEU87 SER88 GLN89 PRO90 LYS91 ILE92 VAL93 LYS94 TRP95 ASP96 ARG97 ASP98 MET99
Unit 8 ARG1 PHE2 PRO3 LEU4 THR5 PHE6 GLY7 TRP8 CYS9 PHE10
Unit 9 LYS2 GLU3 VAL4 GLU5 GLN6 ASN7 SER8 GLY9 PRO10 LEU11 SER12 VAL13 PRO14 GLU15 GLY16 ALA17 ILE18 ALA19 SER20 LEU21 ASN22 CYS23 THR24 TYR25 SER26 ASP27 ARG28 GLY29 SER30 GLN31 SER32 PHE33 PHE34 TRP35 TYR36 ARG37 GLN38 TYR39 SER40 GLY41 LYS42 SER43 PRO44 GLU45 LEU46 ILE47 MET48 SER49 ILE50 TYR51 SER52 ASN53 GLY54 ASP55 LYS56 GLU57 ASP58 GLY59 ARG60 PHE61 THR62 ALA63 GLN64 LEU65 ASN66 LYS67 ALA68 SER69 GLN70 TYR71 VAL72 SER73 LEU74 LEU75 ILE76 ARG77 ASP78 SER79 GLN80 PRO81 SER82 ASP83 SER84 ALA85 THR86 TYR87 LEU88 TRP89 GLY90 THR91 TYR92 ASN93 GLN94 GLY95 GLY96 LYS97 LEU98 ILE99 PHE100 GLY101 GLN102 GLY103 THR104 GLU105 LEU106 SER107 VAL108 LYS109 PRO110 ASN111 ILE112 GLN113 ASN114 PRO115 ASP116 PRO117 ALA118 VAL119 TYR120 GLN121 LEU122 ARG123 ASP124 SER125 LYS126 SER127 SER128 ASP129 LYS130 SER131 VAL132 CYS133 LEU134 PHE135 THR136 ASP137 PHE138 ASP139 SER140 GLN141 THR142 ASN143 VAL144 SER145 GLN146 SER147 LYS148 ASP149 SER150 ASP151 VAL152 TYR153 ILE154 THR155 ASP156 LYS157 CYS158 VAL159 LEU160 ASP161 MET162 ARG163 SER164 MET165 ASP166 PHE167 LYS168 SER169 ASN170 SER171 ALA172 VAL173 ALA174 TRP175 SER176 ASN177 LYS178 SER179 ASP180 PHE181 ALA182 CYS183 ALA184 ASN185 ALA186 PHE187 ASN188 ASN189 SER190 ILE191 ILE192 PRO193 GLU194 ASP195 THR196 PHE197 PHE198 PRO199 SER200
Unit 10 GLU1 ALA2 GLN3 VAL4 THR5 GLN6 ASN7 PRO8 ARG9 TYR10 LEU11 ILE12 THR13 VAL14 THR15 GLY16 LYS17 LYS18 LEU19 THR20 VAL21 THR22 CYS23 SER24 GLN25 ASN26 MET27 ASN28 HIS29 GLU30 TYR31 MET32 SER33 TRP34 TYR35 ARG36 GLN37 ASP38 PRO39 GLY40 LEU41 GLY42 LEU43 ARG44 GLN45 ILE46 TYR47 TYR48 SER49 MET50 ASN51 VAL52 GLU53 VAL54 THR55 ASP56 LYS57 GLY58 ASP59 VAL60 PRO61 GLU62 GLY63 TYR64 LYS65 VAL66 SER67 ARG68 LYS69 GLU70 LYS71 ARG72 ASN73 PHE74 PRO75 LEU76 ILE77 LEU78 GLU79 SER80 PRO81 SER82 PRO83 ASN84 GLN85 THR86 SER87 LEU88 TYR89 PHE90 CYS91 ALA92 SER93 SER94 GLY95 ALA96 SER97 HIS98 GLU99 GLN100 TYR101 PHE102 GLY103 PRO104 GLY105 THR106 ARG107 LEU108 THR109 VAL110 THR111 GLU112 ASP113 LEU114 LYS115 ASN116 VAL117 PHE118 PRO119 PRO120 GLU121 VAL122 ALA123 VAL124 PHE125 GLU126 PRO127 SER128 GLU129 ALA130 GLU131 ILE132 SER133 HIS134 THR135 GLN136 LYS137 ALA138 THR139 LEU140 VAL141 CYS142 LEU143 ALA144 THR145 GLY146 PHE147 TYR148 PRO149 ASP150 HIS151 VAL152 GLU153 LEU154 SER155 TRP156 TRP157 VAL158 ASN159 GLY160 LYS161 GLU162 VAL163 HIS164 SER165 GLY166 VAL167 CYS168 THR169 ASP170 PRO171 GLN172 PRO173 LEU174 LYS175 GLU176 GLN177 PRO178 ALA179 LEU180 ASN181 ASP182 SER183 ARG184 TYR185 ALA186 LEU187 SER188 SER189 ARG190 LEU191 ARG192 VAL193 SER194 ALA195 THR196 PHE197 TRP198 GLN199 ASN200 PRO201 ARG202 ASN203 HIS204 PHE205 ARG206 CYS207 GLN208 VAL209 GLN210 PHE211 TYR212 GLY213 LEU214 SER215 GLU216 ASN217 ASP218 GLU219 TRP220 THR221 GLN222 ASP223 ARG224 ALA225 LYS226 PRO227 VAL228 THR229 GLN230 ILE231 VAL232 SER233 ALA234 GLU235 ALA236 TRP237 GLY238 ARG239 ALA240 ASP241
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany