3VWJ - Sequence, Chains, Asymmetric and Biological Units

• Title: TERNARY CRYSTAL STRUCTURE OF THE HUMAN NKT TCR-CD1D-C20:2 CO
• Keywords: CD1D, NKT T CELL RECEPTOR, ALPHA-GALACTOSYLCERAMIDE, PROTEIN COMPLEX, CELL MEMBRANE, DISULFIDE BOND, ENDOSOME, GLYCOPROT HOST-VIRUS INTERACTION, IMMUNE RESPONSE, IMMUNOGLOBULIN DOM INNATE IMMUNITY, LYSOSOME, MEMBRANE, TRANSMEMBRANE, DISEASE MUTATION, GLYCATION, MHC I, PYRROLIDONE CARBOXYLIC ACID, SE IMMUNE SYSTEM
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3VWJ	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	ANTIGEN-PRESENTING GLYCOPROTEIN CD1D	A	252	1880	0
2	Protein	BETA-2-MICROGLOBULIN	B	97	769	0
3	Protein	NKT15 T CELL RECEPTOR ALPHA-CHAIN	C	193	1416	0
4	Protein	NKT15 T CELL RECEPTOR BETA-CHAIN	D	241	1804	0
5	Ligand	ANTIGEN-PRESENTING GLYCOPROTEIN CD1D	A	3	0	82
6	Ligand	NKT15 T CELL RECEPTOR BETA-CHAIN	D	1	0	1
7	Water			17	0	17
total				804	5869	100

Proteins

Unit 1	PHE 8 PRO 9 LEU 10 ARG 11 CYS 12 LEU 13 GLN 14 ILE 15 SER 16 SER 17 PHE 18 ALA 19 ASN 20 SER 21 SER 22 TRP 23 THR 24 ARG 25 THR 26 ASP 27 GLY 28 LEU 29 ALA 30 TRP 31 LEU 32 GLY 33 GLU 34 LEU 35 GLN 36 THR 37 HIS 38 SER 39 TRP 40 SER 41 ASN 42 ASP 43 SER 44 ASP 45 THR 46 VAL 47 ARG 48 SER 49 LEU 50 LYS 51 PRO 52 TRP 53 SER 54 GLN 55 GLY 56 THR 57 PHE 58 SER 59 ASP 60 GLN 61 GLN 62 TRP 63 GLU 64 THR 65 LEU 66 GLN 67 HIS 68 ILE 69 PHE 70 ARG 71 VAL 72 TYR 73 ARG 74 SER 75 SER 76 PHE 77 THR 78 ARG 79 ASP 80 VAL 81 LYS 82 GLU 83 PHE 84 ALA 85 LYS 86 MET 87 LEU 88 ARG 89 LEU 90 SER 91 TYR 92 PRO 93 LEU 94 GLU 95 LEU 96 GLN 97 VAL 98 SER 99 ALA 100 GLY 101 CYS 102 GLU 103 VAL 104 SER 110 ASN 111 ASN 112 PHE 113 PHE 114 HIS 115 VAL 116 ALA 117 PHE 118 GLN 119 GLY 120 LYS 121 ASP 122 ILE 123 LEU 124 SER 125 PHE 126 GLN 127 GLY 128 THR 129 SER 130 TRP 131 GLU 132 PRO 133 THR 134 GLN 135 GLU 136 ALA 137 PRO 138 LEU 139 TRP 140 VAL 141 ASN 142 LEU 143 ALA 144 ILE 145 GLN 146 VAL 147 LEU 148 ASN 149 GLN 150 ASP 151 LYS 152 TRP 153 THR 154 ARG 155 GLU 156 THR 157 VAL 158 GLN 159 TRP 160 LEU 161 LEU 162 ASN 163 GLY 164 THR 165 CYS 166 PRO 167 GLN 168 PHE 169 VAL 170 SER 171 GLY 172 LEU 173 LEU 174 GLU 175 SER 176 GLY 177 LYS 178 SER 179 GLU 180 LEU 181 LYS 182 LYS 183 GLN 184 VAL 185 LYS 186 PRO 187 LYS 188 ALA 189 TRP 190 LEU 191 SER 192 ARG 193 GLY 194 PRO 195 SER 196 PRO 197 GLY 200 ARG 201 LEU 202 LEU 203 LEU 204 VAL 205 CYS 206 HIS 207 VAL 208 SER 209 GLY 210 PHE 211 TYR 212 PRO 213 LYS 214 PRO 215 VAL 216 TRP 217 VAL 218 LYS 219 TRP 220 MET 221 GLU 226 GLN 227 GLN 228 GLY 229 THR 230 GLN 231 PRO 232 GLY 233 ASP 234 ILE 235 LEU 236 PRO 237 ASN 238 ALA 239 ASP 240 GLU 241 THR 242 TRP 243 TYR 244 LEU 245 ARG 246 ALA 247 THR 248 LEU 249 ASP 250 VAL 251 SER 260 CYS 261 ARG 262 VAL 263 LYS 264 HIS 265 SER 266 SER 267 LEU 268 GLU 269 GLY 270 GLN 271 ASP 272 ILE 273 VAL 274 LEU 275 TYR 276 TRP 277 HIS 278
Unit 2	ILE 1 GLN 2 ARG 3 THR 4 PRO 5 LYS 6 ILE 7 GLN 8 VAL 9 TYR 10 SER 11 ARG 12 HIS 13 PRO 14 ALA 15 GLU 16 ASN 17 GLY 18 LYS 19 SER 20 ASN 21 PHE 22 LEU 23 ASN 24 CYS 25 TYR 26 VAL 27 SER 28 GLY 29 PHE 30 HIS 31 PRO 32 SER 33 ASP 34 ILE 35 GLU 36 VAL 37 ASP 38 LEU 39 LEU 40 LYS 41 ASN 42 GLY 43 GLU 44 ARG 45 ILE 46 GLU 47 LYS 48 VAL 49 GLU 50 HIS 51 SER 52 ASP 53 LEU 54 SER 55 PHE 56 SER 57 LYS 58 ASP 59 TRP 60 SER 61 PHE 62 TYR 63 LEU 64 LEU 65 TYR 66 TYR 67 THR 68 GLU 69 PHE 70 THR 71 PRO 72 THR 73 GLU 74 LYS 75 ASP 76 GLU 77 TYR 78 ALA 79 CYS 80 ARG 81 VAL 82 ASN 83 HIS 84 VAL 85 THR 86 LEU 87 SER 88 GLN 89 PRO 90 LYS 91 ILE 92 VAL 93 LYS 94 TRP 95 ASP 96 ARG 97
Unit 3	ASN 1 GLN 2 VAL 3 GLU 4 GLN 5 SER 6 PRO 7 GLN 8 SER 9 LEU 10 ILE 11 ILE 12 LEU 13 GLU 14 GLY 15 LYS 16 ASN 17 CYS 18 THR 19 LEU 20 GLN 21 CYS 22 ASN 23 TYR 24 THR 25 VAL 26 SER 27 PRO 28 PHE 29 SER 30 ASN 31 LEU 32 ARG 33 TRP 34 TYR 35 LYS 36 GLN 37 ASP 38 THR 39 GLY 40 ARG 41 GLY 42 PRO 43 VAL 44 SER 45 LEU 46 THR 47 ILE 48 MET 49 THR 50 PHE 51 SER 52 GLU 53 ASN 54 THR 55 LYS 56 SER 57 ASN 58 GLY 59 ARG 60 TYR 62 THR 63 ALA 64 THR 65 LEU 66 ASP 67 ALA 68 ASP 69 THR 70 LYS 71 GLN 72 SER 73 SER 74 LEU 75 HIS 76 ILE 77 THR 78 ALA 79 SER 80 GLN 81 LEU 82 SER 83 ASP 84 SER 85 ALA 86 SER 87 TYR 88 ILE 89 CYS 90 VAL 91 VAL 92 SER 93 ASP 94 ARG 95 GLY 96 SER 97 THR 98 LEU 99 GLY 100 ARG 103 LEU 104 TYR 105 PHE 106 GLY 107 ARG 108 GLY 109 THR 110 GLN 111 LEU 112 THR 113 VAL 114 TRP 115 PRO 116 ASP 117 ILE 118 ASN 120 PRO 121 ASP 122 PRO 123 ALA 124 VAL 125 TYR 126 GLN 127 LEU 128 ARG 129 ASP 130 SER 131 SER 137 VAL 138 CYS 139 LEU 140 PHE 141 THR 142 ASP 143 PHE 144 ASP 145 SER 146 GLN 147 THR 148 ASN 149 VAL 150 SER 151 GLN 152 SER 153 LYS 154 SER 156 ASP 157 VAL 158 TYR 159 ILE 160 THR 161 ASP 162 LYS 163 CYS 164 VAL 165 LEU 166 ASP 167 MET 168 ARG 169 SER 170 MET 171 ASP 172 PHE 173 LYS 174 SER 175 ASN 176 SER 177 ALA 178 VAL 179 ALA 180 TRP 181 SER 182 ASP 186 PHE 187 ALA 188 CYS 189 ALA 190 ASN 191 ALA 192 PHE 193 ASN 194 ASN 195 SER 196 ILE 197 ILE 198 PRO 199 GLU 200 ASP 201 THR 202 PHE 203 PHE 204 PRO 205 SER 206
Unit 4	ASP 3 ILE 4 TYR 5 GLN 6 THR 7 PRO 8 ARG 9 TYR 10 LEU 11 VAL 12 ILE 13 GLY 14 THR 15 GLY 16 LYS 17 LYS 18 ILE 19 THR 20 LEU 21 GLU 22 CYS 23 SER 24 GLN 25 THR 26 MET 27 GLY 28 HIS 29 ASP 30 LYS 31 MET 32 TYR 33 TRP 34 TYR 35 GLN 36 GLN 37 ASP 38 PRO 39 GLY 40 MET 41 GLU 42 LEU 43 HIS 44 LEU 45 ILE 46 HIS 47 TYR 48 SER 49 TYR 50 GLY 51 VAL 52 ASN 53 SER 54 THR 55 GLU 56 LYS 57 GLY 58 ASP 59 LEU 60 SER 61 SER 62 GLU 63 SER 65 THR 66 VAL 67 SER 68 ARG 69 ILE 70 ARG 71 THR 72 GLU 73 HIS 74 PHE 75 PRO 76 LEU 77 THR 78 LEU 79 GLU 80 SER 81 ALA 82 ARG 83 PRO 84 SER 85 HIS 86 THR 87 SER 88 GLN 89 TYR 90 LEU 91 CYS 92 ALA 93 SER 94 SER 95 GLY 96 LEU 97 ARG 98 ASP 99 ARG 100 GLY 101 LEU 102 TYR 103 GLU 105 GLN 106 TYR 107 PHE 108 GLY 109 PRO 110 GLY 111 THR 112 ARG 113 LEU 114 THR 115 VAL 116 THR 117 GLU 118 ASP 119 LEU 120 LYS 121 ASN 122 VAL 123 PHE 124 PRO 125 PRO 126 GLU 127 VAL 128 ALA 129 VAL 130 PHE 131 GLU 132 PRO 133 SER 134 GLU 135 ALA 136 GLU 137 ILE 138 SER 139 HIS 140 THR 141 GLN 142 LYS 143 ALA 144 THR 145 LEU 146 VAL 147 CYS 148 LEU 149 ALA 150 THR 151 GLY 152 PHE 153 TYR 154 PRO 155 ASP 156 HIS 157 VAL 158 GLU 159 LEU 160 SER 161 TRP 162 TRP 163 VAL 164 ASN 165 LYS 167 GLU 168 VAL 169 HIS 170 SER 171 GLY 172 VAL 173 CYS 174 THR 175 ASP 176 PRO 177 GLN 178 PRO 179 LEU 180 LYS 181 GLU 182 GLN 183 PRO 184 ALA 185 LEU 186 ASN 187 ASP 188 SER 189 ARG 190 TYR 191 ALA 192 LEU 193 SER 194 SER 195 ARG 196 LEU 197 ARG 198 VAL 199 SER 200 ALA 201 THR 202 PHE 203 TRP 204 GLN 205 ASN 206 PRO 207 ARG 208 ASN 209 HIS 210 PHE 211 ARG 212 CYS 213 GLN 214 VAL 215 GLN 216 PHE 217 TYR 218 GLY 219 LEU 220 SER 221 GLU 222 ASN 223 ASP 224 GLU 225 TRP 226 THR 227 GLN 228 ASP 229 ARG 230 ALA 231 LYS 232 PRO 233 VAL 234 THR 235 GLN 236 ILE 237 VAL 238 SER 239 ALA 240 GLU 241 ALA 242 TRP 243 GLY 244 ARG 245 ALA 246

Ligands

Unit 5	NAG 301 NAG 302 DB3 303
Unit 6	MG 301