3VPS - Sequence, Chains, Asymmetric and Biological Units

• Title: STRUCTURE OF A NOVEL NAD DEPENDENT-NDP-HEXOSAMINE 5,6-DEHYDR TUNA, INVOLVED IN TUNICAMYCIN BIOSYNTHESIS
• Keywords: TUNICAMYCINS, BIOSYNTHESIS, EXO-GLYCAL, DEHYDRATASE, ROSSMAN TRANSFERASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3VPS	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	NAD-DEPENDENT EPIMERASE/DEHYDRATASE	A	303	2315	0
2	Protein	NAD-DEPENDENT EPIMERASE/DEHYDRATASE	B	301	2303	0
3	Ligand	NAD-DEPENDENT EPIMERASE/DEHYDRATASE	A	2	0	83
4	Ligand	NAD-DEPENDENT EPIMERASE/DEHYDRATASE	B	2	0	83
5	Water			219	0	219
total				827	4618	385

Proteins

Unit 1

LYS 7 HIS 8 ARG 9 ILE 10 LEU 11 ILE 12 THR 13 GLY 14 GLY 15 ALA 16 GLY 17 PHE 18 ILE 19 GLY 20 GLY 21 HIS 22 LEU 23 ALA 24 ARG 25 ALA 26 LEU 27 VAL 28 ALA 29 SER 30 GLY 31 GLU 32 GLU 33 VAL 34 THR 35 VAL 36 LEU 37 ASP 38 ASP 39 LEU 40 ARG 41 VAL 42 PRO 43 PRO 44 MET 45 ILE 46 PRO 47 PRO 48 GLU 49 GLY 50 THR 51 GLY 52 LYS 53 PHE 54 LEU 55 GLU 56 LYS 57 PRO 58 VAL 59 LEU 60 GLU 61 LEU 62 GLU 63 GLU 64 ARG 65 ASP 66 LEU 67 SER 68 ASP 69 VAL 70 ARG 71 LEU 72 VAL 73 TYR 74 HIS 75 LEU 76 ALA 77 SER 78 HIS 79 LYS 80 SER 81 VAL 82 PRO 83 ARG 84 SER 85 PHE 86 LYS 87 GLN 88 PRO 89 LEU 90 ASP 91 TYR 92 LEU 93 ASP 94 ASN 95 VAL 96 ASP 97 SER 98 GLY 99 ARG 100 HIS 101 LEU 102 LEU 103 ALA 104 LEU 105 CYS 106 THR 107 SER 108 VAL 109 GLY 110 VAL 111 PRO 112 LYS 113 VAL 114 VAL 115 VAL 116 GLY 117 SER 118 THR 119 CYS 120 GLU 121 VAL 122 TYR 123 GLY 124 GLN 125 ALA 126 ASP 127 THR 128 LEU 129 PRO 130 THR 131 PRO 132 GLU 133 ASP 134 SER 135 PRO 136 LEU 137 SER 138 PRO 139 ARG 140 SER 141 PRO 142 TYR 143 ALA 144 ALA 145 SER 146 LYS 147 VAL 148 GLY 149 LEU 150 GLU 151 MET 152 VAL 153 ALA 154 GLY 155 ALA 156 HIS 157 GLN 158 ARG 159 ALA 160 SER 161 VAL 162 ALA 163 PRO 164 GLU 165 VAL 166 GLY 167 ILE 168 VAL 169 ARG 170 PHE 171 PHE 172 ASN 173 VAL 174 TYR 175 GLY 176 PRO 177 GLY 178 GLU 179 ARG 180 PRO 181 ASP 182 ALA 183 LEU 184 VAL 185 PRO 186 ARG 187 LEU 188 CYS 189 ALA 190 ASN 191 LEU 192 LEU 193 THR 194 ARG 195 ASN 196 GLU 197 LEU 198 PRO 199 VAL 200 GLU 201 GLY 202 ASP 203 GLY 204 GLU 205 GLN 206 ARG 207 ARG 208 ASP 209 PHE 210 THR 211 TYR 212 ILE 213 THR 214 ASP 215 VAL 216 VAL 217 ASP 218 LYS 219 LEU 220 VAL 221 ALA 222 LEU 223 ALA 224 ASN 225 ARG 226 PRO 227 LEU 228 PRO 229 SER 230 VAL 231 VAL 232 ASN 233 PHE 234 GLY 235 SER 236 GLY 237 GLN 238 SER 239 LEU 240 SER 241 VAL 242 ASN 243 ASP 244 VAL 245 ILE 246 ARG 247 ILE 248 LEU 249 GLN 250 ALA 251 THR 252 SER 253 PRO 254 ALA 255 ALA 256 GLU 257 VAL 258 ALA 259 ARG 260 LYS 261 GLN 262 PRO 263 ARG 264 PRO 265 ASN 266 GLU 267 ILE 268 THR 269 GLU 270 PHE 271 ARG 272 ALA 273 ASP 274 THR 275 ALA 276 LEU 277 GLN 278 THR 279 ARG 280 GLN 281 ILE 282 GLY 283 GLU 284 ARG 285 SER 286 GLY 287 GLY 288 ILE 289 GLY 290 ILE 291 GLU 292 GLU 293 GLY 294 ILE 295 ARG 296 LEU 297 THR 298 LEU 299 GLU 300 TRP 301 TRP 302 GLN 303 SER 304 ARG 305 ASP 306 LEU 307 ASP 308 ASP 309

Unit 2

HIS 8 ARG 9 ILE 10 LEU 11 ILE 12 THR 13 GLY 14 GLY 15 ALA 16 GLY 17 PHE 18 ILE 19 GLY 20 GLY 21 HIS 22 LEU 23 ALA 24 ARG 25 ALA 26 LEU 27 VAL 28 ALA 29 SER 30 GLY 31 GLU 32 GLU 33 VAL 34 THR 35 VAL 36 LEU 37 ASP 38 ASP 39 LEU 40 ARG 41 VAL 42 PRO 43 PRO 44 MET 45 ILE 46 PRO 47 PRO 48 GLU 49 GLY 50 THR 51 GLY 52 LYS 53 PHE 54 LEU 55 GLU 56 LYS 57 PRO 58 VAL 59 LEU 60 GLU 61 LEU 62 GLU 63 GLU 64 ARG 65 ASP 66 LEU 67 SER 68 ASP 69 VAL 70 ARG 71 LEU 72 VAL 73 TYR 74 HIS 75 LEU 76 ALA 77 SER 78 HIS 79 LYS 80 SER 81 VAL 82 PRO 83 ARG 84 SER 85 PHE 86 LYS 87 GLN 88 PRO 89 LEU 90 ASP 91 TYR 92 LEU 93 ASP 94 ASN 95 VAL 96 ASP 97 SER 98 GLY 99 ARG 100 HIS 101 LEU 102 LEU 103 ALA 104 LEU 105 CYS 106 THR 107 SER 108 VAL 109 GLY 110 VAL 111 PRO 112 LYS 113 VAL 114 VAL 115 VAL 116 GLY 117 SER 118 THR 119 CYS 120 GLU 121 VAL 122 TYR 123 GLY 124 GLN 125 ALA 126 ASP 127 THR 128 LEU 129 PRO 130 THR 131 PRO 132 GLU 133 ASP 134 SER 135 PRO 136 LEU 137 SER 138 PRO 139 ARG 140 SER 141 PRO 142 TYR 143 ALA 144 ALA 145 SER 146 LYS 147 VAL 148 GLY 149 LEU 150 GLU 151 MET 152 VAL 153 ALA 154 GLY 155 ALA 156 HIS 157 GLN 158 ARG 159 ALA 160 SER 161 VAL 162 ALA 163 PRO 164 GLU 165 VAL 166 GLY 167 ILE 168 VAL 169 ARG 170 PHE 171 PHE 172 ASN 173 VAL 174 TYR 175 GLY 176 PRO 177 GLY 178 GLU 179 ARG 180 PRO 181 ASP 182 ALA 183 LEU 184 VAL 185 PRO 186 ARG 187 LEU 188 CYS 189 ALA 190 ASN 191 LEU 192 LEU 193 THR 194 ARG 195 ASN 196 GLU 197 LEU 198 PRO 199 VAL 200 GLU 201 GLY 202 ASP 203 GLY 204 GLU 205 GLN 206 ARG 207 ARG 208 ASP 209 PHE 210 THR 211 TYR 212 ILE 213 THR 214 ASP 215 VAL 216 VAL 217 ASP 218 LYS 219 LEU 220 VAL 221 ALA 222 LEU 223 ALA 224 ASN 225 ARG 226 PRO 227 LEU 228 PRO 229 SER 230 VAL 231 VAL 232 ASN 233 PHE 234 GLY 235 SER 236 GLY 237 GLN 238 SER 239 LEU 240 SER 241 VAL 242 ASN 243 ASP 244 VAL 245 ILE 246 ARG 247 ILE 248 LEU 249 GLN 250 ALA 251 THR 252 SER 253 PRO 254 ALA 255 ALA 256 GLU 257 VAL 258 ALA 259 ARG 260 LYS 261 GLN 262 PRO 263 ARG 264 PRO 265 ASN 266 GLU 267 ILE 268 THR 269 GLU 270 PHE 271 ARG 272 ALA 273 ASP 274 THR 275 ALA 276 LEU 277 GLN 278 THR 279 ARG 280 GLN 281 ILE 282 GLY 283 GLU 284 GLY 287 GLY 288 ILE 289 GLY 290 ILE 291 GLU 292 GLU 293 GLY 294 ILE 295 ARG 296 LEU 297 THR 298 LEU 299 GLU 300 TRP 301 TRP 302 GLN 303 SER 304 ARG 305 ASP 306 LEU 307 ASP 308 ASP 309 ILE 310

Ligands

Unit 3	UD1 400 NAD 401
Unit 4	UD1 400 NAD 401