3VM5 - Sequence, Chains, Asymmetric and Biological Units

• Title: RECOMBINANT MEDAKA FISH ALPHA-AMYLASE EXPRESSED IN YEAST PIC PASTORIS
• Keywords: (ALPHA/BETA)8 BARREL FOLD, STARCH HYDROLYSIS, HYDROLASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3VM5	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	ALPHA-AMYLASE	A	499	3938	0
2	Ligand	ALPHA-AMYLASE	A	2	0	2
3	Water			47	0	47
total				548	3938	49

Proteins

Unit 1

GLN 1 HIS 2 ASN 3 PRO 4 ASN 5 THR 6 ARG 7 ASP 8 GLY 9 ARG 10 THR 11 ALA 12 ILE 13 VAL 14 HIS 15 LEU 16 PHE 17 GLU 18 TRP 19 ARG 20 TRP 21 ALA 22 ASP 23 ILE 24 ALA 25 ALA 26 GLU 27 CYS 28 GLU 29 ARG 30 PHE 31 LEU 32 GLY 33 PRO 34 LYS 35 GLY 36 PHE 37 ALA 38 GLY 39 VAL 40 GLN 41 ILE 42 SER 43 PRO 44 PRO 45 ASN 46 GLU 47 HIS 48 ILE 49 LEU 50 VAL 51 SER 52 SER 53 PRO 54 TRP 55 ARG 56 PRO 57 TRP 58 TRP 59 GLN 60 ARG 61 TYR 62 GLN 63 PRO 64 ILE 65 SER 66 TYR 67 ASN 68 LEU 69 CYS 70 SER 71 ARG 72 SER 73 GLY 74 GLY 75 GLU 76 ASN 77 GLU 78 LEU 79 ARG 80 ASP 81 MET 82 ILE 83 THR 84 ARG 85 CYS 86 ASN 87 ASN 88 VAL 89 GLY 90 VAL 91 ASN 92 VAL 93 TYR 94 VAL 95 ASP 96 ALA 97 VAL 98 ILE 99 ASN 100 HIS 101 MET 102 CYS 103 GLY 104 ALA 105 GLY 106 GLY 107 GLY 108 GLU 109 GLY 110 THR 111 HIS 112 SER 113 SER 114 CYS 115 GLY 116 SER 117 TRP 118 PHE 119 ASN 120 ALA 121 ASN 122 ASN 123 LYS 124 ASP 125 PHE 126 PRO 127 SER 128 VAL 129 PRO 130 TYR 131 SER 132 ASN 133 LEU 134 ASP 135 PHE 136 ASN 137 ASP 138 GLY 139 LYS 140 CYS 141 LYS 142 THR 143 GLY 144 SER 145 GLY 146 ASN 147 ILE 148 GLU 149 ASN 150 TYR 151 GLY 152 ASP 153 PRO 154 TYR 155 GLN 156 VAL 157 ARG 158 ASP 159 CYS 160 ARG 161 LEU 162 VAL 163 GLY 164 LEU 165 LEU 166 ASP 167 LEU 168 ALA 169 LEU 170 GLU 171 LYS 172 ASP 173 TYR 174 VAL 175 ARG 176 GLY 177 LYS 178 VAL 179 ALA 180 ASP 181 PHE 182 MET 183 ASN 184 LYS 185 LEU 186 ILE 187 ASP 188 MET 189 GLY 190 VAL 191 ALA 192 GLY 193 PHE 194 ARG 195 VAL 196 ASP 197 ALA 198 CYS 199 LYS 200 HIS 201 MET 202 TRP 203 PRO 204 GLY 205 ASP 206 LEU 207 ASP 208 ASN 209 VAL 210 TYR 211 ARG 212 ARG 213 LEU 214 ASN 215 ASN 216 LEU 217 ASN 218 THR 219 LYS 220 TRP 221 PHE 222 PRO 223 GLY 224 GLY 225 SER 226 ARG 227 PRO 228 PHE 229 ILE 230 PHE 231 GLN 232 GLU 233 VAL 234 ILE 235 ASP 236 LEU 237 GLY 238 GLY 239 GLU 240 PRO 241 ILE 242 THR 243 THR 244 GLY 245 GLU 246 TYR 247 VAL 248 GLY 249 LEU 250 GLY 251 ARG 252 VAL 253 THR 254 GLU 255 PHE 256 LYS 257 TYR 258 GLY 259 ALA 260 ARG 261 LEU 262 GLY 263 GLU 264 LEU 265 PHE 266 ARG 267 LYS 268 TRP 269 ASN 270 GLY 271 GLN 272 LYS 273 LEU 274 SER 275 TYR 276 THR 277 LYS 278 ASN 279 TRP 280 GLY 281 GLU 282 GLY 283 TRP 284 GLY 285 PHE 286 MET 287 ALA 288 ASP 289 GLY 290 ASN 291 ALA 292 VAL 293 VAL 294 PHE 295 THR 296 ASP 297 ASN 298 HIS 299 ASP 300 ASN 301 GLN 302 ARG 303 GLY 304 HIS 305 GLY 306 ALA 307 GLY 308 GLY 309 ALA 310 SER 311 ILE 312 LEU 313 THR 314 PHE 315 TRP 316 ASP 317 PRO 318 ARG 319 LEU 320 TYR 321 LYS 322 MET 323 ALA 324 VAL 325 GLY 326 TYR 327 MET 328 LEU 329 ALA 330 HIS 331 PRO 332 TYR 333 GLY 334 PHE 335 THR 336 ARG 337 VAL 338 MET 339 SER 340 SER 341 TYR 342 SER 343 TRP 344 ASP 345 ARG 346 ASN 347 PHE 348 VAL 349 ASN 350 GLY 351 LYS 352 ASP 353 GLU 354 ASN 355 ASP 356 TRP 357 ILE 358 GLY 359 PRO 360 PRO 361 SER 362 ASN 363 GLY 364 ASP 365 GLY 366 SER 367 THR 368 LYS 369 PRO 370 VAL 371 PRO 372 ILE 373 ASN 374 PRO 375 ASP 376 GLN 377 THR 378 CYS 379 GLY 380 ASP 381 GLY 382 TRP 383 VAL 384 CYS 385 GLU 386 HIS 387 ARG 388 TRP 389 ARG 390 GLN 391 ILE 392 MET 393 ASN 394 MET 395 VAL 396 GLN 397 PHE 398 ARG 399 ASN 400 VAL 401 VAL 402 ASN 403 GLY 404 GLN 405 PRO 406 HIS 407 ALA 408 ASN 409 TRP 410 TRP 411 ASP 412 ASN 413 GLY 414 ASN 415 ASN 416 GLN 417 VAL 418 ALA 419 PHE 420 GLY 421 ARG 422 GLY 423 ASN 424 ARG 425 GLY 426 PHE 427 ILE 428 VAL 429 PHE 430 ASN 431 ASN 432 ASP 433 ASP 434 TRP 435 ALA 436 LEU 437 ASP 438 VAL 439 THR 440 LEU 441 ASN 442 THR 443 GLY 444 LEU 445 PRO 446 GLY 447 GLY 448 THR 449 TYR 450 CYS 451 ASP 452 VAL 453 ILE 454 SER 455 GLY 456 ASN 457 LYS 458 ASP 459 GLY 460 GLY 461 SER 462 CYS 463 THR 464 GLY 465 LYS 466 GLN 467 ILE 468 THR 469 VAL 470 GLY 471 GLY 472 ASP 473 GLY 474 ARG 475 ALA 476 HIS 477 PHE 478 TYR 479 ILE 480 ASN 481 ASN 482 SER 483 GLU 484 GLU 485 ASP 486 PRO 487 PHE 488 ILE 489 ALA 490 ILE 491 HIS 492 ALA 493 ASP 494 SER 495 LYS 496 LEU 497 HIS 498 HIS 499

Ligands

Unit 2

CA 506 CL 507