3VK8 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF DNA-GLYCOSYLASE BOUND TO DNA CONTAINING GLYCOL
• Keywords: DNA GLYCOSYLASE, HNEIL1 ORTHOLOG, DNA LESION, THYMINE GLYCOL ZINCLESS FINGER, DNA BINDING, HYDROLASE-DNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3VK8	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PROBABLE FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE	A	288	2370	0
2	Protein	PROBABLE FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE	B	288	2362	0
3	Other macromolecule		C	13	267	0
4	Other macromolecule		D	13	238	22
5	Other macromolecule		E	13	267	0
6	Other macromolecule		F	13	238	22
7	Ligand	PROBABLE FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE	A	1	0	6
8	Water			444	0	444
total				1073	5742	494

Proteins

Unit 1

PRO 2 GLN 3 GLY 4 PRO 5 GLU 6 VAL 7 ALA 8 LEU 9 THR 10 ALA 11 ASP 12 ILE 13 LEU 14 GLU 15 LYS 16 TYR 17 PHE 18 LYS 19 GLY 20 LYS 21 THR 22 LEU 23 GLU 24 TYR 25 ILE 26 ASP 27 PHE 28 ILE 29 SER 30 GLY 31 ARG 32 TYR 33 SER 34 LYS 35 SER 36 GLU 37 PRO 38 GLU 39 GLY 40 TYR 41 ASP 42 ASP 43 PHE 44 ILE 45 ALA 46 ASN 47 LEU 48 PRO 49 LEU 50 LYS 51 VAL 52 SER 53 ASN 54 VAL 55 ASP 56 THR 57 LYS 58 GLY 59 LYS 60 PHE 61 LEU 62 TRP 63 PHE 64 GLU 65 LEU 66 PHE 67 ASP 68 PRO 69 ASN 70 ASP 71 LYS 72 SER 73 ASN 74 LYS 75 TRP 76 TYR 77 ILE 78 TRP 79 ASN 80 THR 81 PHE 82 GLY 83 LEU 84 THR 85 GLY 86 MET 87 TRP 88 SER 89 LEU 90 PHE 91 GLU 92 ALA 93 LYS 94 TYR 95 THR 96 ARG 97 ALA 98 VAL 99 LEU 100 SER 101 PHE 102 ASP 103 ASN 104 GLU 105 LEU 106 MET 107 ALA 108 TYR 109 PHE 110 SER 111 ASP 112 MET 113 ARG 114 ASN 115 PHE 116 GLY 117 THR 118 PHE 119 LYS 120 PHE 121 SER 122 ASN 123 SER 124 GLU 125 LYS 126 GLU 127 LEU 128 LYS 129 ARG 130 LYS 131 LEU 132 ASN 133 GLU 134 LEU 135 GLY 136 PRO 137 ASP 138 PHE 139 LEU 140 LYS 141 ASN 142 ASP 143 ASP 144 ILE 145 ASP 146 ILE 147 SER 148 LYS 149 ILE 150 LYS 151 LYS 152 TYR 153 LYS 154 GLN 155 PRO 156 ILE 157 VAL 158 ALA 159 LEU 160 LEU 161 MET 162 ASP 163 GLN 164 LYS 165 LYS 166 ILE 167 GLY 168 SER 169 GLY 170 LEU 171 GLY 172 ASN 173 TYR 174 LEU 175 VAL 176 ALA 177 GLU 178 ILE 179 LEU 180 TYR 181 ARG 182 ALA 183 LYS 184 ILE 185 ASP 186 PRO 187 HIS 188 LYS 189 LEU 190 GLY 191 SER 192 ASN 193 LEU 194 THR 195 ASP 196 GLN 197 GLU 198 ILE 199 GLU 200 ASN 201 LEU 202 TRP 203 TYR 204 TRP 205 ILE 206 LYS 207 TYR 208 GLU 209 THR 210 LYS 211 LEU 212 ALA 213 TYR 214 ASP 215 SER 216 ASN 217 HIS 218 ILE 219 GLY 220 TYR 221 MET 222 VAL 223 ASN 224 LEU 225 GLU 226 ASN 227 GLU 228 SER 229 SER 230 LYS 231 ILE 232 GLY 233 ARG 234 LYS 235 ASN 236 TYR 237 HIS 238 PRO 239 ASN 240 ILE 241 HIS 242 PRO 243 THR 244 GLU 245 LYS 246 GLU 247 PHE 248 ASP 249 PHE 250 LEU 251 VAL 252 TYR 253 ARG 254 LYS 255 LYS 256 LYS 257 ASP 258 PRO 259 ASN 260 GLY 261 ASN 262 LYS 263 VAL 264 ILE 265 ALA 266 ASP 267 LYS 268 ILE 269 ILE 270 GLY 271 SER 272 GLY 273 LYS 274 ASN 275 LYS 276 ARG 277 THR 278 THR 279 TYR 280 TRP 281 ALA 282 PRO 283 ALA 284 ILE 285 GLN 286 LYS 287 LEU 288 GLU 289

Unit 2

PRO 2 GLN 3 GLY 4 PRO 5 GLU 6 VAL 7 ALA 8 LEU 9 THR 10 ALA 11 ASP 12 ILE 13 LEU 14 GLU 15 LYS 16 TYR 17 PHE 18 LYS 19 GLY 20 LYS 21 THR 22 LEU 23 GLU 24 TYR 25 ILE 26 ASP 27 PHE 28 ILE 29 SER 30 GLY 31 ARG 32 TYR 33 SER 34 LYS 35 SER 36 GLU 37 PRO 38 GLU 39 GLY 40 TYR 41 ASP 42 ASP 43 PHE 44 ILE 45 ALA 46 ASN 47 LEU 48 PRO 49 LEU 50 LYS 51 VAL 52 SER 53 ASN 54 VAL 55 ASP 56 THR 57 LYS 58 GLY 59 LYS 60 PHE 61 LEU 62 TRP 63 PHE 64 GLU 65 LEU 66 PHE 67 ASP 68 PRO 69 ASN 70 ASP 71 LYS 72 SER 73 ASN 74 LYS 75 TRP 76 TYR 77 ILE 78 TRP 79 ASN 80 THR 81 PHE 82 GLY 83 LEU 84 THR 85 GLY 86 MET 87 TRP 88 SER 89 LEU 90 PHE 91 GLU 92 ALA 93 LYS 94 TYR 95 THR 96 ARG 97 ALA 98 VAL 99 LEU 100 SER 101 PHE 102 ASP 103 ASN 104 GLU 105 LEU 106 MET 107 ALA 108 TYR 109 PHE 110 SER 111 ASP 112 MET 113 ARG 114 ASN 115 PHE 116 GLY 117 THR 118 PHE 119 LYS 120 PHE 121 SER 122 ASN 123 SER 124 GLU 125 LYS 126 GLU 127 LEU 128 LYS 129 ARG 130 LYS 131 LEU 132 ASN 133 GLU 134 LEU 135 GLY 136 PRO 137 ASP 138 PHE 139 LEU 140 LYS 141 ASN 142 ASP 143 ASP 144 ILE 145 ASP 146 ILE 147 SER 148 LYS 149 ILE 150 LYS 151 LYS 152 TYR 153 LYS 154 GLN 155 PRO 156 ILE 157 VAL 158 ALA 159 LEU 160 LEU 161 MET 162 ASP 163 GLN 164 LYS 165 LYS 166 ILE 167 GLY 168 SER 169 GLY 170 LEU 171 GLY 172 ASN 173 TYR 174 LEU 175 VAL 176 ALA 177 GLU 178 ILE 179 LEU 180 TYR 181 ARG 182 ALA 183 LYS 184 ILE 185 ASP 186 PRO 187 HIS 188 LYS 189 LEU 190 GLY 191 SER 192 ASN 193 LEU 194 THR 195 ASP 196 GLN 197 GLU 198 ILE 199 GLU 200 ASN 201 LEU 202 TRP 203 TYR 204 TRP 205 ILE 206 LYS 207 TYR 208 GLU 209 THR 210 LYS 211 LEU 212 ALA 213 TYR 214 ASP 215 SER 216 ASN 217 HIS 218 ILE 219 GLY 220 TYR 221 MET 222 VAL 223 ASN 224 LEU 225 GLU 226 ASN 227 GLU 228 SER 229 SER 230 LYS 231 ILE 232 GLY 233 ARG 234 LYS 235 ASN 236 TYR 237 HIS 238 PRO 239 ASN 240 ILE 241 HIS 242 PRO 243 THR 244 GLU 245 LYS 246 GLU 247 PHE 248 ASP 249 PHE 250 LEU 251 VAL 252 TYR 253 ARG 254 LYS 255 LYS 256 LYS 257 ASP 258 PRO 259 ASN 260 GLY 261 ASN 262 LYS 263 VAL 264 ILE 265 ALA 266 ASP 267 LYS 268 ILE 269 ILE 270 GLY 271 SER 272 GLY 273 LYS 274 ASN 275 LYS 276 ARG 277 THR 278 THR 279 TYR 280 TRP 281 ALA 282 PRO 283 ALA 284 ILE 285 GLN 286 LYS 287 LEU 288 GLU 289

Other macromolecules

Unit 3	DG 1 DT 2 DA 3 DG 4 DA 5 DC 6 DC 7 DT 8 DG 9 DG 10 DA 11 DC 12 DG 13
Unit 4	DC 14 DG 15 DT 16 DC 17 DC 18 DA 19 CTG 20 DG 21 DT 22 DC 23 DT 24 DA 25 DC 26
Unit 5	DG 1 DT 2 DA 3 DG 4 DA 5 DC 6 DC 7 DT 8 DG 9 DG 10 DA 11 DC 12 DG 13
Unit 6	DC 14 DG 15 DT 16 DC 17 DC 18 DA 19 CTG 20 DG 21 DT 22 DC 23 DT 24 DA 25 DC 26

Ligands

Unit 7

GOL 3001