3VK2 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF L-METHIONINE GAMMA-LYASE FROM PSEUDOMON C116H MUTANT.
• Keywords: PLP-DEPENDENT ENZYME, PLP, LYASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3VK2	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	METHIONINE GAMMA-LYASE	A	393	2955	24
2	Protein	METHIONINE GAMMA-LYASE	B	396	2973	24
3	Protein	METHIONINE GAMMA-LYASE	C	392	2946	24
4	Protein	METHIONINE GAMMA-LYASE	D	393	2955	24
5	Ligand	METHIONINE GAMMA-LYASE	A	1	0	5
6	Ligand	METHIONINE GAMMA-LYASE	B	1	0	5
7	Ligand	METHIONINE GAMMA-LYASE	C	1	0	5
8	Ligand	METHIONINE GAMMA-LYASE	D	1	0	5
9	Water			405	0	405
total				1983	11829	521

Proteins

Unit 1	LYS 6 LEU 7 PRO 8 GLY 9 PHE 10 ALA 11 THR 12 ARG 13 ALA 14 ILE 15 HIS 16 HIS 17 GLY 18 TYR 19 ASP 20 PRO 21 GLN 22 ASP 23 HIS 24 GLY 25 GLY 26 ALA 27 LEU 28 VAL 29 PRO 30 PRO 31 VAL 32 TYR 33 GLN 34 THR 35 ALA 36 THR 37 PHE 38 THR 39 PHE 40 PRO 41 THR 42 VAL 43 GLU 44 TYR 45 GLY 46 ALA 47 ALA 48 CYS 49 PHE 50 ALA 51 GLY 52 GLU 53 GLN 54 ALA 55 GLY 56 HIS 57 PHE 58 TYR 59 SER 60 ARG 61 ILE 62 SER 63 ASN 64 PRO 65 THR 66 LEU 67 ASN 68 LEU 69 LEU 70 GLU 71 ALA 72 ARG 73 MET 74 ALA 75 SER 76 LEU 77 GLU 78 GLY 79 GLY 80 GLU 81 ALA 82 GLY 83 LEU 84 ALA 85 LEU 86 ALA 87 SER 88 GLY 89 MET 90 GLY 91 ALA 92 ILE 93 THR 94 SER 95 THR 96 LEU 97 TRP 98 THR 99 LEU 100 LEU 101 ARG 102 PRO 103 GLY 104 ASP 105 GLU 106 VAL 107 LEU 108 LEU 109 GLY 110 ASN 111 THR 112 LEU 113 TYR 114 GLY 115 HIS 116 THR 117 PHE 118 ALA 119 PHE 120 LEU 121 HIS 122 HIS 123 GLY 124 ILE 125 GLY 126 GLU 127 PHE 128 GLY 129 VAL 130 LYS 131 LEU 132 ARG 133 HIS 134 VAL 135 ASP 136 MET 137 ALA 138 ASP 139 LEU 140 GLN 141 ALA 142 LEU 143 GLU 144 ALA 145 ALA 146 MET 147 THR 148 PRO 149 ALA 150 THR 151 ARG 152 VAL 153 ILE 154 TYR 155 PHE 156 GLU 157 SER 158 PRO 159 ALA 160 ASN 161 PRO 162 ASN 163 MET 164 HIS 165 MET 166 ALA 167 ASP 168 ILE 169 ALA 170 GLY 171 VAL 172 ALA 173 LYS 174 ILE 175 ALA 176 ARG 177 LYS 178 HIS 179 GLY 180 ALA 181 THR 182 VAL 183 VAL 184 VAL 185 ASP 186 ASN 187 THR 188 TYR 189 CYS 190 THR 191 PRO 192 TYR 193 LEU 194 GLN 195 ARG 196 PRO 197 LEU 198 GLU 199 LEU 200 GLY 201 ALA 202 ASP 203 LEU 204 VAL 205 VAL 206 HIS 207 SER 208 ALA 209 THR 210 LLP 211 TYR 212 LEU 213 SER 214 GLY 215 HIS 216 GLY 217 ASP 218 ILE 219 THR 220 ALA 221 GLY 222 ILE 223 VAL 224 VAL 225 GLY 226 SER 227 GLN 228 ALA 229 LEU 230 VAL 231 ASP 232 ARG 233 ILE 234 ARG 235 LEU 236 GLN 237 GLY 238 LEU 239 LYS 240 ASP 241 MET 242 THR 243 GLY 244 ALA 245 VAL 246 LEU 247 SER 248 PRO 249 HIS 250 ASP 251 ALA 252 ALA 253 LEU 254 LEU 255 MET 256 ARG 257 GLY 258 ILE 259 LYS 260 THR 261 LEU 262 ASN 263 LEU 264 ARG 265 MET 266 ASP 267 ARG 268 HIS 269 CYS 270 ALA 271 ASN 272 ALA 273 GLN 274 VAL 275 LEU 276 ALA 277 GLU 278 PHE 279 LEU 280 ALA 281 ARG 282 GLN 283 PRO 284 GLN 285 VAL 286 GLU 287 LEU 288 ILE 289 HIS 290 TYR 291 PRO 292 GLY 293 LEU 294 ALA 295 SER 296 PHE 297 PRO 298 GLN 299 TYR 300 THR 301 LEU 302 ALA 303 ARG 304 GLN 305 GLN 306 MET 307 SER 308 GLN 309 PRO 310 GLY 311 GLY 312 MET 313 ILE 314 ALA 315 PHE 316 GLU 317 LEU 318 LYS 319 GLY 320 GLY 321 ILE 322 GLY 323 ALA 324 GLY 325 ARG 326 ARG 327 PHE 328 MET 329 ASN 330 ALA 331 LEU 332 GLN 333 LEU 334 PHE 335 SER 336 ARG 337 ALA 338 VAL 339 SER 340 LEU 341 GLY 342 ASP 343 ALA 344 GLU 345 SER 346 LEU 347 ALA 348 GLN 349 HIS 350 PRO 351 ALA 352 SER 353 MET 354 THR 355 HIS 356 SER 357 SER 358 TYR 359 THR 360 PRO 361 GLU 362 GLU 363 ARG 364 ALA 365 HIS 366 TYR 367 GLY 368 ILE 369 SER 370 GLU 371 GLY 372 LEU 373 VAL 374 ARG 375 LEU 376 SER 377 VAL 378 GLY 379 LEU 380 GLU 381 ASP 382 ILE 383 ASP 384 ASP 385 LEU 386 LEU 387 ALA 388 ASP 389 VAL 390 GLN 391 GLN 392 ALA 393 LEU 394 LYS 395 ALA 396 SER 397 ALA 398
Unit 2	GLY 3 SER 4 ASN 5 LYS 6 LEU 7 PRO 8 GLY 9 PHE 10 ALA 11 THR 12 ARG 13 ALA 14 ILE 15 HIS 16 HIS 17 GLY 18 TYR 19 ASP 20 PRO 21 GLN 22 ASP 23 HIS 24 GLY 25 GLY 26 ALA 27 LEU 28 VAL 29 PRO 30 PRO 31 VAL 32 TYR 33 GLN 34 THR 35 ALA 36 THR 37 PHE 38 THR 39 PHE 40 PRO 41 THR 42 VAL 43 GLU 44 TYR 45 GLY 46 ALA 47 ALA 48 CYS 49 PHE 50 ALA 51 GLY 52 GLU 53 GLN 54 ALA 55 GLY 56 HIS 57 PHE 58 TYR 59 SER 60 ARG 61 ILE 62 SER 63 ASN 64 PRO 65 THR 66 LEU 67 ASN 68 LEU 69 LEU 70 GLU 71 ALA 72 ARG 73 MET 74 ALA 75 SER 76 LEU 77 GLU 78 GLY 79 GLY 80 GLU 81 ALA 82 GLY 83 LEU 84 ALA 85 LEU 86 ALA 87 SER 88 GLY 89 MET 90 GLY 91 ALA 92 ILE 93 THR 94 SER 95 THR 96 LEU 97 TRP 98 THR 99 LEU 100 LEU 101 ARG 102 PRO 103 GLY 104 ASP 105 GLU 106 VAL 107 LEU 108 LEU 109 GLY 110 ASN 111 THR 112 LEU 113 TYR 114 GLY 115 HIS 116 THR 117 PHE 118 ALA 119 PHE 120 LEU 121 HIS 122 HIS 123 GLY 124 ILE 125 GLY 126 GLU 127 PHE 128 GLY 129 VAL 130 LYS 131 LEU 132 ARG 133 HIS 134 VAL 135 ASP 136 MET 137 ALA 138 ASP 139 LEU 140 GLN 141 ALA 142 LEU 143 GLU 144 ALA 145 ALA 146 MET 147 THR 148 PRO 149 ALA 150 THR 151 ARG 152 VAL 153 ILE 154 TYR 155 PHE 156 GLU 157 SER 158 PRO 159 ALA 160 ASN 161 PRO 162 ASN 163 MET 164 HIS 165 MET 166 ALA 167 ASP 168 ILE 169 ALA 170 GLY 171 VAL 172 ALA 173 LYS 174 ILE 175 ALA 176 ARG 177 LYS 178 HIS 179 GLY 180 ALA 181 THR 182 VAL 183 VAL 184 VAL 185 ASP 186 ASN 187 THR 188 TYR 189 CYS 190 THR 191 PRO 192 TYR 193 LEU 194 GLN 195 ARG 196 PRO 197 LEU 198 GLU 199 LEU 200 GLY 201 ALA 202 ASP 203 LEU 204 VAL 205 VAL 206 HIS 207 SER 208 ALA 209 THR 210 LLP 211 TYR 212 LEU 213 SER 214 GLY 215 HIS 216 GLY 217 ASP 218 ILE 219 THR 220 ALA 221 GLY 222 ILE 223 VAL 224 VAL 225 GLY 226 SER 227 GLN 228 ALA 229 LEU 230 VAL 231 ASP 232 ARG 233 ILE 234 ARG 235 LEU 236 GLN 237 GLY 238 LEU 239 LYS 240 ASP 241 MET 242 THR 243 GLY 244 ALA 245 VAL 246 LEU 247 SER 248 PRO 249 HIS 250 ASP 251 ALA 252 ALA 253 LEU 254 LEU 255 MET 256 ARG 257 GLY 258 ILE 259 LYS 260 THR 261 LEU 262 ASN 263 LEU 264 ARG 265 MET 266 ASP 267 ARG 268 HIS 269 CYS 270 ALA 271 ASN 272 ALA 273 GLN 274 VAL 275 LEU 276 ALA 277 GLU 278 PHE 279 LEU 280 ALA 281 ARG 282 GLN 283 PRO 284 GLN 285 VAL 286 GLU 287 LEU 288 ILE 289 HIS 290 TYR 291 PRO 292 GLY 293 LEU 294 ALA 295 SER 296 PHE 297 PRO 298 GLN 299 TYR 300 THR 301 LEU 302 ALA 303 ARG 304 GLN 305 GLN 306 MET 307 SER 308 GLN 309 PRO 310 GLY 311 GLY 312 MET 313 ILE 314 ALA 315 PHE 316 GLU 317 LEU 318 LYS 319 GLY 320 GLY 321 ILE 322 GLY 323 ALA 324 GLY 325 ARG 326 ARG 327 PHE 328 MET 329 ASN 330 ALA 331 LEU 332 GLN 333 LEU 334 PHE 335 SER 336 ARG 337 ALA 338 VAL 339 SER 340 LEU 341 GLY 342 ASP 343 ALA 344 GLU 345 SER 346 LEU 347 ALA 348 GLN 349 HIS 350 PRO 351 ALA 352 SER 353 MET 354 THR 355 HIS 356 SER 357 SER 358 TYR 359 THR 360 PRO 361 GLU 362 GLU 363 ARG 364 ALA 365 HIS 366 TYR 367 GLY 368 ILE 369 SER 370 GLU 371 GLY 372 LEU 373 VAL 374 ARG 375 LEU 376 SER 377 VAL 378 GLY 379 LEU 380 GLU 381 ASP 382 ILE 383 ASP 384 ASP 385 LEU 386 LEU 387 ALA 388 ASP 389 VAL 390 GLN 391 GLN 392 ALA 393 LEU 394 LYS 395 ALA 396 SER 397 ALA 398
Unit 3	LEU 7 PRO 8 GLY 9 PHE 10 ALA 11 THR 12 ARG 13 ALA 14 ILE 15 HIS 16 HIS 17 GLY 18 TYR 19 ASP 20 PRO 21 GLN 22 ASP 23 HIS 24 GLY 25 GLY 26 ALA 27 LEU 28 VAL 29 PRO 30 PRO 31 VAL 32 TYR 33 GLN 34 THR 35 ALA 36 THR 37 PHE 38 THR 39 PHE 40 PRO 41 THR 42 VAL 43 GLU 44 TYR 45 GLY 46 ALA 47 ALA 48 CYS 49 PHE 50 ALA 51 GLY 52 GLU 53 GLN 54 ALA 55 GLY 56 HIS 57 PHE 58 TYR 59 SER 60 ARG 61 ILE 62 SER 63 ASN 64 PRO 65 THR 66 LEU 67 ASN 68 LEU 69 LEU 70 GLU 71 ALA 72 ARG 73 MET 74 ALA 75 SER 76 LEU 77 GLU 78 GLY 79 GLY 80 GLU 81 ALA 82 GLY 83 LEU 84 ALA 85 LEU 86 ALA 87 SER 88 GLY 89 MET 90 GLY 91 ALA 92 ILE 93 THR 94 SER 95 THR 96 LEU 97 TRP 98 THR 99 LEU 100 LEU 101 ARG 102 PRO 103 GLY 104 ASP 105 GLU 106 VAL 107 LEU 108 LEU 109 GLY 110 ASN 111 THR 112 LEU 113 TYR 114 GLY 115 HIS 116 THR 117 PHE 118 ALA 119 PHE 120 LEU 121 HIS 122 HIS 123 GLY 124 ILE 125 GLY 126 GLU 127 PHE 128 GLY 129 VAL 130 LYS 131 LEU 132 ARG 133 HIS 134 VAL 135 ASP 136 MET 137 ALA 138 ASP 139 LEU 140 GLN 141 ALA 142 LEU 143 GLU 144 ALA 145 ALA 146 MET 147 THR 148 PRO 149 ALA 150 THR 151 ARG 152 VAL 153 ILE 154 TYR 155 PHE 156 GLU 157 SER 158 PRO 159 ALA 160 ASN 161 PRO 162 ASN 163 MET 164 HIS 165 MET 166 ALA 167 ASP 168 ILE 169 ALA 170 GLY 171 VAL 172 ALA 173 LYS 174 ILE 175 ALA 176 ARG 177 LYS 178 HIS 179 GLY 180 ALA 181 THR 182 VAL 183 VAL 184 VAL 185 ASP 186 ASN 187 THR 188 TYR 189 CYS 190 THR 191 PRO 192 TYR 193 LEU 194 GLN 195 ARG 196 PRO 197 LEU 198 GLU 199 LEU 200 GLY 201 ALA 202 ASP 203 LEU 204 VAL 205 VAL 206 HIS 207 SER 208 ALA 209 THR 210 LLP 211 TYR 212 LEU 213 SER 214 GLY 215 HIS 216 GLY 217 ASP 218 ILE 219 THR 220 ALA 221 GLY 222 ILE 223 VAL 224 VAL 225 GLY 226 SER 227 GLN 228 ALA 229 LEU 230 VAL 231 ASP 232 ARG 233 ILE 234 ARG 235 LEU 236 GLN 237 GLY 238 LEU 239 LYS 240 ASP 241 MET 242 THR 243 GLY 244 ALA 245 VAL 246 LEU 247 SER 248 PRO 249 HIS 250 ASP 251 ALA 252 ALA 253 LEU 254 LEU 255 MET 256 ARG 257 GLY 258 ILE 259 LYS 260 THR 261 LEU 262 ASN 263 LEU 264 ARG 265 MET 266 ASP 267 ARG 268 HIS 269 CYS 270 ALA 271 ASN 272 ALA 273 GLN 274 VAL 275 LEU 276 ALA 277 GLU 278 PHE 279 LEU 280 ALA 281 ARG 282 GLN 283 PRO 284 GLN 285 VAL 286 GLU 287 LEU 288 ILE 289 HIS 290 TYR 291 PRO 292 GLY 293 LEU 294 ALA 295 SER 296 PHE 297 PRO 298 GLN 299 TYR 300 THR 301 LEU 302 ALA 303 ARG 304 GLN 305 GLN 306 MET 307 SER 308 GLN 309 PRO 310 GLY 311 GLY 312 MET 313 ILE 314 ALA 315 PHE 316 GLU 317 LEU 318 LYS 319 GLY 320 GLY 321 ILE 322 GLY 323 ALA 324 GLY 325 ARG 326 ARG 327 PHE 328 MET 329 ASN 330 ALA 331 LEU 332 GLN 333 LEU 334 PHE 335 SER 336 ARG 337 ALA 338 VAL 339 SER 340 LEU 341 GLY 342 ASP 343 ALA 344 GLU 345 SER 346 LEU 347 ALA 348 GLN 349 HIS 350 PRO 351 ALA 352 SER 353 MET 354 THR 355 HIS 356 SER 357 SER 358 TYR 359 THR 360 PRO 361 GLU 362 GLU 363 ARG 364 ALA 365 HIS 366 TYR 367 GLY 368 ILE 369 SER 370 GLU 371 GLY 372 LEU 373 VAL 374 ARG 375 LEU 376 SER 377 VAL 378 GLY 379 LEU 380 GLU 381 ASP 382 ILE 383 ASP 384 ASP 385 LEU 386 LEU 387 ALA 388 ASP 389 VAL 390 GLN 391 GLN 392 ALA 393 LEU 394 LYS 395 ALA 396 SER 397 ALA 398
Unit 4	LYS 6 LEU 7 PRO 8 GLY 9 PHE 10 ALA 11 THR 12 ARG 13 ALA 14 ILE 15 HIS 16 HIS 17 GLY 18 TYR 19 ASP 20 PRO 21 GLN 22 ASP 23 HIS 24 GLY 25 GLY 26 ALA 27 LEU 28 VAL 29 PRO 30 PRO 31 VAL 32 TYR 33 GLN 34 THR 35 ALA 36 THR 37 PHE 38 THR 39 PHE 40 PRO 41 THR 42 VAL 43 GLU 44 TYR 45 GLY 46 ALA 47 ALA 48 CYS 49 PHE 50 ALA 51 GLY 52 GLU 53 GLN 54 ALA 55 GLY 56 HIS 57 PHE 58 TYR 59 SER 60 ARG 61 ILE 62 SER 63 ASN 64 PRO 65 THR 66 LEU 67 ASN 68 LEU 69 LEU 70 GLU 71 ALA 72 ARG 73 MET 74 ALA 75 SER 76 LEU 77 GLU 78 GLY 79 GLY 80 GLU 81 ALA 82 GLY 83 LEU 84 ALA 85 LEU 86 ALA 87 SER 88 GLY 89 MET 90 GLY 91 ALA 92 ILE 93 THR 94 SER 95 THR 96 LEU 97 TRP 98 THR 99 LEU 100 LEU 101 ARG 102 PRO 103 GLY 104 ASP 105 GLU 106 VAL 107 LEU 108 LEU 109 GLY 110 ASN 111 THR 112 LEU 113 TYR 114 GLY 115 HIS 116 THR 117 PHE 118 ALA 119 PHE 120 LEU 121 HIS 122 HIS 123 GLY 124 ILE 125 GLY 126 GLU 127 PHE 128 GLY 129 VAL 130 LYS 131 LEU 132 ARG 133 HIS 134 VAL 135 ASP 136 MET 137 ALA 138 ASP 139 LEU 140 GLN 141 ALA 142 LEU 143 GLU 144 ALA 145 ALA 146 MET 147 THR 148 PRO 149 ALA 150 THR 151 ARG 152 VAL 153 ILE 154 TYR 155 PHE 156 GLU 157 SER 158 PRO 159 ALA 160 ASN 161 PRO 162 ASN 163 MET 164 HIS 165 MET 166 ALA 167 ASP 168 ILE 169 ALA 170 GLY 171 VAL 172 ALA 173 LYS 174 ILE 175 ALA 176 ARG 177 LYS 178 HIS 179 GLY 180 ALA 181 THR 182 VAL 183 VAL 184 VAL 185 ASP 186 ASN 187 THR 188 TYR 189 CYS 190 THR 191 PRO 192 TYR 193 LEU 194 GLN 195 ARG 196 PRO 197 LEU 198 GLU 199 LEU 200 GLY 201 ALA 202 ASP 203 LEU 204 VAL 205 VAL 206 HIS 207 SER 208 ALA 209 THR 210 LLP 211 TYR 212 LEU 213 SER 214 GLY 215 HIS 216 GLY 217 ASP 218 ILE 219 THR 220 ALA 221 GLY 222 ILE 223 VAL 224 VAL 225 GLY 226 SER 227 GLN 228 ALA 229 LEU 230 VAL 231 ASP 232 ARG 233 ILE 234 ARG 235 LEU 236 GLN 237 GLY 238 LEU 239 LYS 240 ASP 241 MET 242 THR 243 GLY 244 ALA 245 VAL 246 LEU 247 SER 248 PRO 249 HIS 250 ASP 251 ALA 252 ALA 253 LEU 254 LEU 255 MET 256 ARG 257 GLY 258 ILE 259 LYS 260 THR 261 LEU 262 ASN 263 LEU 264 ARG 265 MET 266 ASP 267 ARG 268 HIS 269 CYS 270 ALA 271 ASN 272 ALA 273 GLN 274 VAL 275 LEU 276 ALA 277 GLU 278 PHE 279 LEU 280 ALA 281 ARG 282 GLN 283 PRO 284 GLN 285 VAL 286 GLU 287 LEU 288 ILE 289 HIS 290 TYR 291 PRO 292 GLY 293 LEU 294 ALA 295 SER 296 PHE 297 PRO 298 GLN 299 TYR 300 THR 301 LEU 302 ALA 303 ARG 304 GLN 305 GLN 306 MET 307 SER 308 GLN 309 PRO 310 GLY 311 GLY 312 MET 313 ILE 314 ALA 315 PHE 316 GLU 317 LEU 318 LYS 319 GLY 320 GLY 321 ILE 322 GLY 323 ALA 324 GLY 325 ARG 326 ARG 327 PHE 328 MET 329 ASN 330 ALA 331 LEU 332 GLN 333 LEU 334 PHE 335 SER 336 ARG 337 ALA 338 VAL 339 SER 340 LEU 341 GLY 342 ASP 343 ALA 344 GLU 345 SER 346 LEU 347 ALA 348 GLN 349 HIS 350 PRO 351 ALA 352 SER 353 MET 354 THR 355 HIS 356 SER 357 SER 358 TYR 359 THR 360 PRO 361 GLU 362 GLU 363 ARG 364 ALA 365 HIS 366 TYR 367 GLY 368 ILE 369 SER 370 GLU 371 GLY 372 LEU 373 VAL 374 ARG 375 LEU 376 SER 377 VAL 378 GLY 379 LEU 380 GLU 381 ASP 382 ILE 383 ASP 384 ASP 385 LEU 386 LEU 387 ALA 388 ASP 389 VAL 390 GLN 391 GLN 392 ALA 393 LEU 394 LYS 395 ALA 396 SER 397 ALA 398

Ligands

Unit 5	SO4 501
Unit 6	SO4 501
Unit 7	SO4 501
Unit 8	SO4 501