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Title | CRYSTAL STRUCTURE OF PEPTIDYL-TRNA HYDROLASE FROM ESCHERICHI COMPLEX WITH THE CCA-ACCEPTOR-T[PSI]C DOMAIN OF TRNA | |
Keywords | PEPTIDYL-TRNA HYDROLASE, CCA-ACCEPTOR-T[PSI]C DOMAIN, SEVEN STRANDS FORM, HYDROLASE-RNA COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3VJR | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | PEPTIDYL-TRNA HYDROLASE | A | 193 | 1480 | 0 |
2 | RNA | B | 36 | 766 | 0 | |
3 | Protein | PEPTIDYL-TRNA HYDROLASE | C | 193 | 1480 | 0 |
4 | RNA | D | 36 | 766 | 0 | |
5 | Water | 139 | 0 | 139 | ||
total | 597 | 4492 | 139 |
Unit 1 | THR5 ILE6 LYS7 LEU8 ILE9 VAL10 GLY11 LEU12 ALA13 ASN14 PRO15 GLY16 ALA17 GLU18 TYR19 ALA20 ALA21 THR22 ARG23 HIS24 ASN25 ALA26 GLY27 ALA28 TRP29 PHE30 VAL31 ASP32 LEU33 LEU34 ALA35 GLU36 ARG37 LEU38 ARG39 ALA40 PRO41 LEU42 ARG43 GLU44 GLU45 ALA46 LYS47 PHE48 PHE49 GLY50 TYR51 THR52 SER53 ARG54 VAL55 THR56 LEU57 GLY58 GLY59 GLU60 ASP61 VAL62 ARG63 LEU64 LEU65 VAL66 PRO67 THR68 THR69 PHE70 MET71 ASN72 LEU73 SER74 GLY75 LYS76 ALA77 VAL78 ALA79 ALA80 MET81 ALA82 SER83 PHE84 PHE85 ARG86 ILE87 ASN88 PRO89 ASP90 GLU91 ILE92 LEU93 VAL94 ALA95 HIS96 ASP97 GLU98 LEU99 ASP100 LEU101 PRO102 PRO103 GLY104 VAL105 ALA106 LYS107 PHE108 LYS109 LEU110 GLY111 GLY112 GLY113 HIS114 GLY115 GLY116 HIS117 ASN118 GLY119 LEU120 LYS121 ASP122 ILE123 ILE124 SER125 LYS126 LEU127 GLY128 ASN129 ASN130 PRO131 ASN132 PHE133 HIS134 ARG135 LEU136 ARG137 ILE138 GLY139 ILE140 GLY141 HIS142 PRO143 GLY144 ASP145 LYS146 ASN147 LYS148 VAL149 VAL150 GLY151 PHE152 VAL153 LEU154 GLY155 LYS156 PRO157 PRO158 VAL159 SER160 GLU161 GLN162 LYS163 LEU164 ILE165 ASP166 GLU167 ALA168 ILE169 ASP170 GLU171 ALA172 ALA173 ARG174 CYS175 THR176 GLU177 MET178 TRP179 PHE180 THR181 ASP182 GLY183 LEU184 THR185 LYS186 ALA187 THR188 ASN189 ARG190 LEU191 HIS192 ALA193 PHE194 LYS195 ALA196 GLN197 |
Unit 3 | THR5 ILE6 LYS7 LEU8 ILE9 VAL10 GLY11 LEU12 ALA13 ASN14 PRO15 GLY16 ALA17 GLU18 TYR19 ALA20 ALA21 THR22 ARG23 HIS24 ASN25 ALA26 GLY27 ALA28 TRP29 PHE30 VAL31 ASP32 LEU33 LEU34 ALA35 GLU36 ARG37 LEU38 ARG39 ALA40 PRO41 LEU42 ARG43 GLU44 GLU45 ALA46 LYS47 PHE48 PHE49 GLY50 TYR51 THR52 SER53 ARG54 VAL55 THR56 LEU57 GLY58 GLY59 GLU60 ASP61 VAL62 ARG63 LEU64 LEU65 VAL66 PRO67 THR68 THR69 PHE70 MET71 ASN72 LEU73 SER74 GLY75 LYS76 ALA77 VAL78 ALA79 ALA80 MET81 ALA82 SER83 PHE84 PHE85 ARG86 ILE87 ASN88 PRO89 ASP90 GLU91 ILE92 LEU93 VAL94 ALA95 HIS96 ASP97 GLU98 LEU99 ASP100 LEU101 PRO102 PRO103 GLY104 VAL105 ALA106 LYS107 PHE108 LYS109 LEU110 GLY111 GLY112 GLY113 HIS114 GLY115 GLY116 HIS117 ASN118 GLY119 LEU120 LYS121 ASP122 ILE123 ILE124 SER125 LYS126 LEU127 GLY128 ASN129 ASN130 PRO131 ASN132 PHE133 HIS134 ARG135 LEU136 ARG137 ILE138 GLY139 ILE140 GLY141 HIS142 PRO143 GLY144 ASP145 LYS146 ASN147 LYS148 VAL149 VAL150 GLY151 PHE152 VAL153 LEU154 GLY155 LYS156 PRO157 PRO158 VAL159 SER160 GLU161 GLN162 LYS163 LEU164 ILE165 ASP166 GLU167 ALA168 ILE169 ASP170 GLU171 ALA172 ALA173 ARG174 CYS175 THR176 GLU177 MET178 TRP179 PHE180 THR181 ASP182 GLY183 LEU184 THR185 LYS186 ALA187 THR188 ASN189 ARG190 LEU191 HIS192 ALA193 PHE194 LYS195 ALA196 GLN197 |
Unit 2 | G1 G2 G3 G4 G5 C6 U7 A8 A9 G10 C11 G12 G13 U14 U15 C16 G17 A18 U19 C20 C21 C22 G23 C24 U25 U26 A27 G28 C29 U30 C31 C32 A33 C34 C35 A36 |
Unit 4 | G1 G2 G3 G4 G5 C6 U7 A8 A9 G10 C11 G12 G13 U14 U15 C16 G17 A18 U19 C20 C21 C22 G23 C24 U25 U26 A27 G28 C29 U30 C31 C32 A33 C34 C35 A36 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |