3VEF - Sequence, Chains, Asymmetric and Biological Units

• Title: RHODOCOCCUS JOSTII RHA1 DYPB N246H VARIANT IN COMPLEX WITH H
• Keywords: PEROXIDASE, LIGNAN, DYP, OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3VEF	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	DYPB	A	308	2339	0
2	Protein	DYPB	B	310	2351	0
3	Protein	DYPB	C	308	2339	0
4	Ligand	DYPB	A	2	0	44
5	Ligand	DYPB	B	2	0	44
6	Ligand	DYPB	C	2	0	44
7	Water			291	0	291
total				1223	7029	423

Proteins

Unit 1	ALA 6 ARG 7 LEU 8 ALA 9 PRO 10 GLN 11 ALA 12 VAL 13 LEU 14 THR 15 PRO 16 PRO 17 SER 18 ALA 19 ALA 20 SER 21 LEU 22 PHE 23 LEU 24 VAL 25 LEU 26 VAL 27 ALA 28 GLY 29 ASP 30 SER 31 ASP 32 ASP 33 ASP 34 ARG 35 ALA 36 THR 37 VAL 38 CYS 39 ASP 40 VAL 41 ILE 42 SER 43 GLY 44 ILE 45 ASP 46 GLY 47 PRO 48 LEU 49 LYS 50 ALA 51 VAL 52 GLY 53 PHE 54 ARG 55 GLU 56 LEU 57 ALA 58 GLY 59 SER 60 LEU 61 SER 62 CYS 63 VAL 64 VAL 65 GLY 66 VAL 67 GLY 68 ALA 69 GLN 70 PHE 71 TRP 72 ASP 73 ARG 74 VAL 75 SER 76 ALA 77 SER 78 SER 79 LYS 80 PRO 81 ALA 82 HIS 83 LEU 84 HIS 85 PRO 86 PHE 87 VAL 88 PRO 89 LEU 90 SER 91 GLY 92 PRO 93 VAL 94 HIS 95 SER 96 ALA 97 PRO 98 SER 99 THR 100 PRO 101 GLY 102 ASP 103 LEU 104 LEU 105 PHE 106 HIS 107 ILE 108 LYS 109 ALA 110 ALA 111 ARG 112 LYS 113 ASP 114 LEU 115 CYS 116 PHE 117 GLU 118 LEU 119 GLY 120 ARG 121 GLN 122 ILE 123 VAL 124 SER 125 ALA 126 LEU 127 GLY 128 SER 129 ALA 130 ALA 131 THR 132 VAL 133 VAL 134 ASP 135 GLU 136 VAL 137 HIS 138 GLY 139 PHE 140 ARG 141 TYR 142 PHE 143 ASP 144 SER 145 ARG 146 ASP 147 LEU 148 LEU 149 GLY 150 PHE 151 VAL 152 ASP 153 GLY 154 THR 155 GLU 156 ASN 157 PRO 158 THR 159 ASP 160 ASP 161 ASP 162 ALA 163 ALA 164 ASP 165 SER 166 ALA 167 LEU 168 ILE 169 GLY 170 ASP 171 GLU 172 ASP 173 PRO 174 ASP 175 PHE 176 ARG 177 GLY 178 GLY 179 SER 180 TYR 181 VAL 182 ILE 183 VAL 184 GLN 185 LYS 186 TYR 187 LEU 188 HIS 189 ASP 190 MET 191 SER 192 ALA 193 TRP 194 ASN 195 THR 196 LEU 197 SER 198 THR 199 GLU 200 GLU 201 GLN 202 GLU 203 ARG 204 VAL 205 ILE 206 GLY 207 ARG 208 THR 209 LYS 210 LEU 211 GLU 212 ASN 213 VAL 214 GLU 215 LEU 216 ASP 217 ASP 218 ASP 219 ALA 220 GLN 221 PRO 222 SER 223 ASN 224 SER 225 HIS 226 VAL 227 THR 228 LEU 229 ASN 230 THR 231 ILE 232 VAL 233 ASP 234 ASP 235 ASP 236 GLY 237 VAL 238 GLU 239 HIS 240 ASP 241 ILE 242 LEU 243 ARG 244 ASP 245 HIS 246 MET 247 ALA 248 PHE 249 GLY 250 SER 251 LEU 252 GLY 253 GLU 254 ALA 255 GLU 256 TYR 257 GLY 258 THR 259 TYR 260 PHE 261 ILE 262 GLY 263 TYR 264 ALA 265 LYS 266 ASP 267 PRO 268 ALA 269 VAL 270 THR 271 GLU 272 LEU 273 MET 274 LEU 275 ARG 276 ARG 277 MET 278 PHE 279 LEU 280 GLY 281 GLU 282 PRO 283 PRO 284 GLY 285 ASN 286 TYR 287 ASP 288 ARG 289 VAL 290 LEU 291 ASP 292 PHE 293 SER 294 THR 295 ALA 296 ALA 297 THR 298 GLY 299 THR 300 LEU 301 PHE 302 PHE 303 VAL 304 PRO 305 SER 306 ARG 307 ASP 308 VAL 309 LEU 310 GLU 311 SER 312 LEU 313
Unit 2	ALA 6 ARG 7 LEU 8 ALA 9 PRO 10 GLN 11 ALA 12 VAL 13 LEU 14 THR 15 PRO 16 PRO 17 SER 18 ALA 19 ALA 20 SER 21 LEU 22 PHE 23 LEU 24 VAL 25 LEU 26 VAL 27 ALA 28 GLY 29 ASP 30 SER 31 ASP 32 ASP 33 ASP 34 ARG 35 ALA 36 THR 37 VAL 38 CYS 39 ASP 40 VAL 41 ILE 42 SER 43 GLY 44 ILE 45 ASP 46 GLY 47 PRO 48 LEU 49 LYS 50 ALA 51 VAL 52 GLY 53 PHE 54 ARG 55 GLU 56 LEU 57 ALA 58 GLY 59 SER 60 LEU 61 SER 62 CYS 63 VAL 64 VAL 65 GLY 66 VAL 67 GLY 68 ALA 69 GLN 70 PHE 71 TRP 72 ASP 73 ARG 74 VAL 75 SER 76 ALA 77 SER 78 SER 79 LYS 80 PRO 81 ALA 82 HIS 83 LEU 84 HIS 85 PRO 86 PHE 87 VAL 88 PRO 89 LEU 90 SER 91 GLY 92 PRO 93 VAL 94 HIS 95 SER 96 ALA 97 PRO 98 SER 99 THR 100 PRO 101 GLY 102 ASP 103 LEU 104 LEU 105 PHE 106 HIS 107 ILE 108 LYS 109 ALA 110 ALA 111 ARG 112 LYS 113 ASP 114 LEU 115 CYS 116 PHE 117 GLU 118 LEU 119 GLY 120 ARG 121 GLN 122 ILE 123 VAL 124 SER 125 ALA 126 LEU 127 GLY 128 SER 129 ALA 130 ALA 131 THR 132 VAL 133 VAL 134 ASP 135 GLU 136 VAL 137 HIS 138 GLY 139 PHE 140 ARG 141 TYR 142 PHE 143 ASP 144 SER 145 ARG 146 ASP 147 LEU 148 LEU 149 GLY 150 PHE 151 VAL 152 ASP 153 GLY 154 THR 155 GLU 156 ASN 157 PRO 158 THR 159 ASP 160 ASP 161 ASP 162 ALA 163 ALA 164 ASP 165 SER 166 ALA 167 LEU 168 ILE 169 GLY 170 ASP 171 GLU 172 ASP 173 PRO 174 ASP 175 PHE 176 ARG 177 GLY 178 GLY 179 SER 180 TYR 181 VAL 182 ILE 183 VAL 184 GLN 185 LYS 186 TYR 187 LEU 188 HIS 189 ASP 190 MET 191 SER 192 ALA 193 TRP 194 ASN 195 THR 196 LEU 197 SER 198 THR 199 GLU 200 GLU 201 GLN 202 GLU 203 ARG 204 VAL 205 ILE 206 GLY 207 ARG 208 THR 209 LYS 210 LEU 211 GLU 212 ASN 213 VAL 214 GLU 215 LEU 216 ASP 217 ASP 218 ASP 219 ALA 220 GLN 221 PRO 222 SER 223 ASN 224 SER 225 HIS 226 VAL 227 THR 228 LEU 229 ASN 230 THR 231 ILE 232 VAL 233 ASP 234 ASP 235 ASP 236 GLY 237 VAL 238 GLU 239 HIS 240 ASP 241 ILE 242 LEU 243 ARG 244 ASP 245 HIS 246 MET 247 ALA 248 PHE 249 GLY 250 SER 251 LEU 252 GLY 253 GLU 254 ALA 255 GLU 256 TYR 257 GLY 258 THR 259 TYR 260 PHE 261 ILE 262 GLY 263 TYR 264 ALA 265 LYS 266 ASP 267 PRO 268 ALA 269 VAL 270 THR 271 GLU 272 LEU 273 MET 274 LEU 275 ARG 276 ARG 277 MET 278 PHE 279 LEU 280 GLY 281 GLU 282 PRO 283 PRO 284 GLY 285 ASN 286 TYR 287 ASP 288 ARG 289 VAL 290 LEU 291 ASP 292 PHE 293 SER 294 THR 295 ALA 296 ALA 297 THR 298 GLY 299 THR 300 LEU 301 PHE 302 PHE 303 VAL 304 PRO 305 SER 306 ARG 307 ASP 308 VAL 309 LEU 310 GLU 311 SER 312 LEU 313 GLY 314 ASP 315
Unit 3	ALA 6 ARG 7 LEU 8 ALA 9 PRO 10 GLN 11 ALA 12 VAL 13 LEU 14 THR 15 PRO 16 PRO 17 SER 18 ALA 19 ALA 20 SER 21 LEU 22 PHE 23 LEU 24 VAL 25 LEU 26 VAL 27 ALA 28 GLY 29 ASP 30 SER 31 ASP 32 ASP 33 ASP 34 ARG 35 ALA 36 THR 37 VAL 38 CYS 39 ASP 40 VAL 41 ILE 42 SER 43 GLY 44 ILE 45 ASP 46 GLY 47 PRO 48 LEU 49 LYS 50 ALA 51 VAL 52 GLY 53 PHE 54 ARG 55 GLU 56 LEU 57 ALA 58 GLY 59 SER 60 LEU 61 SER 62 CYS 63 VAL 64 VAL 65 GLY 66 VAL 67 GLY 68 ALA 69 GLN 70 PHE 71 TRP 72 ASP 73 ARG 74 VAL 75 SER 76 ALA 77 SER 78 SER 79 LYS 80 PRO 81 ALA 82 HIS 83 LEU 84 HIS 85 PRO 86 PHE 87 VAL 88 PRO 89 LEU 90 SER 91 GLY 92 PRO 93 VAL 94 HIS 95 SER 96 ALA 97 PRO 98 SER 99 THR 100 PRO 101 GLY 102 ASP 103 LEU 104 LEU 105 PHE 106 HIS 107 ILE 108 LYS 109 ALA 110 ALA 111 ARG 112 LYS 113 ASP 114 LEU 115 CYS 116 PHE 117 GLU 118 LEU 119 GLY 120 ARG 121 GLN 122 ILE 123 VAL 124 SER 125 ALA 126 LEU 127 GLY 128 SER 129 ALA 130 ALA 131 THR 132 VAL 133 VAL 134 ASP 135 GLU 136 VAL 137 HIS 138 GLY 139 PHE 140 ARG 141 TYR 142 PHE 143 ASP 144 SER 145 ARG 146 ASP 147 LEU 148 LEU 149 GLY 150 PHE 151 VAL 152 ASP 153 GLY 154 THR 155 GLU 156 ASN 157 PRO 158 THR 159 ASP 160 ASP 161 ASP 162 ALA 163 ALA 164 ASP 165 SER 166 ALA 167 LEU 168 ILE 169 GLY 170 ASP 171 GLU 172 ASP 173 PRO 174 ASP 175 PHE 176 ARG 177 GLY 178 GLY 179 SER 180 TYR 181 VAL 182 ILE 183 VAL 184 GLN 185 LYS 186 TYR 187 LEU 188 HIS 189 ASP 190 MET 191 SER 192 ALA 193 TRP 194 ASN 195 THR 196 LEU 197 SER 198 THR 199 GLU 200 GLU 201 GLN 202 GLU 203 ARG 204 VAL 205 ILE 206 GLY 207 ARG 208 THR 209 LYS 210 LEU 211 GLU 212 ASN 213 VAL 214 GLU 215 LEU 216 ASP 217 ASP 218 ASP 219 ALA 220 GLN 221 PRO 222 SER 223 ASN 224 SER 225 HIS 226 VAL 227 THR 228 LEU 229 ASN 230 THR 231 ILE 232 VAL 233 ASP 234 ASP 235 ASP 236 GLY 237 VAL 238 GLU 239 HIS 240 ASP 241 ILE 242 LEU 243 ARG 244 ASP 245 HIS 246 MET 247 ALA 248 PHE 249 GLY 250 SER 251 LEU 252 GLY 253 GLU 254 ALA 255 GLU 256 TYR 257 GLY 258 THR 259 TYR 260 PHE 261 ILE 262 GLY 263 TYR 264 ALA 265 LYS 266 ASP 267 PRO 268 ALA 269 VAL 270 THR 271 GLU 272 LEU 273 MET 274 LEU 275 ARG 276 ARG 277 MET 278 PHE 279 LEU 280 GLY 281 GLU 282 PRO 283 PRO 284 GLY 285 ASN 286 TYR 287 ASP 288 ARG 289 VAL 290 LEU 291 ASP 292 PHE 293 SER 294 THR 295 ALA 296 ALA 297 THR 298 GLY 299 THR 300 LEU 301 PHE 302 PHE 303 VAL 304 PRO 305 SER 306 ARG 307 ASP 308 VAL 309 LEU 310 GLU 311 SER 312 LEU 313

Ligands

Unit 4	HEM 401 CL 402
Unit 5	HEM 401 CL 402
Unit 6	HEM 401 CL 402