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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF A 16 NM PROTEIN CAGE DESIGNED BY FUSING SYMMETR OLIGOMERIC DOMAINS
Keywords PROTEIN DESIGN, BIONANOTECHNOLOGY, PROTEIN ASSEMBLY, SYMMETR BIOMATERIALS, DE NOVO PROTEIN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3VDX     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DESIGNED 16NM TETRAHEDRAL PROTEIN CAGE CONTAINING BROMOPEROXIDASE BPO-A2 AND MATRIX PROTEIN 1  A 438 3383 0
2  Protein   DESIGNED 16NM TETRAHEDRAL PROTEIN CAGE CONTAINING BROMOPEROXIDASE BPO-A2 AND MATRIX PROTEIN 1  B 438 3383 0
3  Protein   DESIGNED 16NM TETRAHEDRAL PROTEIN CAGE CONTAINING BROMOPEROXIDASE BPO-A2 AND MATRIX PROTEIN 1  C 438 3383 0
total       1314 10149 0
Proteins
Unit 1 PRO1 PHE2 ILE3 THR4 VAL5 GLY6 GLN7 GLU8 ASN9 SER10 THR11 SER12 ILE13 ASP14 LEU15 TYR16 TYR17 GLU18 ASP19 HIS20 GLY21 THR22 GLY23 VAL24 PRO25 VAL26 VAL27 LEU28 ILE29 HIS30 GLY31 PHE32 PRO33 LEU34 SER35 GLY36 HIS37 SER38 TRP39 GLU40 ARG41 GLN42 SER43 ALA44 ALA45 LEU46 LEU47 ASP48 ALA49 GLY50 TYR51 ARG52 VAL53 ILE54 THR55 TYR56 ASP57 ARG58 ARG59 GLY60 PHE61 GLY62 GLN63 SER64 SER65 GLN66 PRO67 THR68 THR69 GLY70 TYR71 ASP72 TYR73 ASP74 THR75 PHE76 ALA77 ALA78 ASP79 LEU80 ASN81 THR82 VAL83 LEU84 GLU85 THR86 LEU87 ASP88 LEU89 GLN90 ASP91 ALA92 VAL93 LEU94 VAL95 GLY96 PHE97 SER98 MET99 GLY100 THR101 GLY102 GLU103 VAL104 ALA105 ARG106 TYR107 VAL108 SER109 SER110 TYR111 GLY112 THR113 ALA114 ARG115 ILE116 ALA117 ALA118 VAL119 ALA120 PHE121 LEU122 ALA123 SER124 LEU125 GLU126 PRO127 PHE128 LEU129 LEU130 LYS131 THR132 ASP133 ASP134 ASN135 PRO136 ASP137 GLY138 ALA139 ALA140 PRO141 GLN142 GLU143 PHE144 PHE145 ASP146 GLY147 ILE148 VAL149 ALA150 ALA151 VAL152 LYS153 ALA154 ASP155 ARG156 TYR157 ALA158 PHE159 TYR160 THR161 GLY162 PHE163 PHE164 ASN165 ASP166 PHE167 TYR168 ASN169 LEU170 ASP171 GLU172 ASN173 LEU174 GLY175 THR176 ARG177 ILE178 SER179 GLU180 GLU181 ALA182 VAL183 ARG184 ASN185 SER186 TRP187 ASN188 THR189 ALA190 ALA191 SER192 GLY193 GLY194 PHE195 PHE196 ALA197 ALA198 ALA199 ALA200 ALA201 PRO202 THR203 THR204 TRP205 TYR206 THR207 ASP208 PHE209 ARG210 ALA211 ASP212 ILE213 PRO214 ARG215 ILE216 ASP217 VAL218 PRO219 ALA220 LEU221 ILE222 LEU223 HIS224 GLY225 THR226 GLY227 ASP228 ARG229 THR230 LEU231 PRO232 ILE233 GLU234 ASN235 THR236 ALA237 ARG238 VAL239 PHE240 HIS241 LYS242 ALA243 LEU244 PRO245 SER246 ALA247 GLU248 TYR249 VAL250 GLU251 VAL252 GLU253 GLY254 ALA255 PRO256 HIS257 GLY258 LEU259 LEU260 TRP261 THR262 HIS263 ALA264 GLU265 GLU266 VAL267 ASN268 THR269 ALA270 LEU271 LEU272 ALA273 PHE274 LEU275 ALA276 LYS277 ALA278 LEU279 GLU280 ALA281 GLN282 LYS283 GLN284 LYS285 LEU286 LEU287 THR288 GLU289 VAL290 GLU291 THR292 TYR293 VAL294 LEU295 SER296 ILE297 ILE298 PRO299 SER300 GLY301 PRO302 LEU303 LYS304 ALA305 GLU306 ILE307 ALA308 GLN309 ARG310 LEU311 GLU312 ASP313 VAL314 PHE315 ALA316 GLY317 LYS318 ASN319 THR320 ASP321 LEU322 GLU323 VAL324 LEU325 MET326 GLU327 TRP328 LEU329 LYS330 THR331 ARG332 PRO333 ILE334 LEU335 SER336 PRO337 LEU338 THR339 LYS340 GLY341 ILE342 LEU343 GLY344 PHE345 VAL346 PHE347 THR348 LEU349 THR350 VAL351 PRO352 SER353 GLU354 ARG355 GLY356 LEU357 GLN358 ARG359 ARG360 ARG361 PHE362 VAL363 GLN364 ASN365 ALA366 LEU367 ASN368 GLY369 ASN370 GLY371 ASP372 PRO373 ASN374 ASN375 MET376 ASP377 LYS378 ALA379 VAL380 LYS381 LEU382 TYR383 ARG384 LYS385 LEU386 LYS387 ARG388 GLU389 ILE390 THR391 PHE392 HIS393 GLY394 ALA395 LYS396 GLU397 ILE398 SER399 LEU400 SER401 TYR402 SER403 ALA404 GLY405 ALA406 LEU407 ALA408 SER409 CYS410 MET411 GLY412 LEU413 ILE414 TYR415 ASN416 ARG417 MET418 GLY419 ALA420 VAL421 THR422 THR423 GLU424 VAL425 ALA426 PHE427 GLY428 LEU429 VAL430 CYS431 ALA432 THR433 CYS434 GLU435 GLN436 ILE437 ALA438
Unit 2 PRO1 PHE2 ILE3 THR4 VAL5 GLY6 GLN7 GLU8 ASN9 SER10 THR11 SER12 ILE13 ASP14 LEU15 TYR16 TYR17 GLU18 ASP19 HIS20 GLY21 THR22 GLY23 VAL24 PRO25 VAL26 VAL27 LEU28 ILE29 HIS30 GLY31 PHE32 PRO33 LEU34 SER35 GLY36 HIS37 SER38 TRP39 GLU40 ARG41 GLN42 SER43 ALA44 ALA45 LEU46 LEU47 ASP48 ALA49 GLY50 TYR51 ARG52 VAL53 ILE54 THR55 TYR56 ASP57 ARG58 ARG59 GLY60 PHE61 GLY62 GLN63 SER64 SER65 GLN66 PRO67 THR68 THR69 GLY70 TYR71 ASP72 TYR73 ASP74 THR75 PHE76 ALA77 ALA78 ASP79 LEU80 ASN81 THR82 VAL83 LEU84 GLU85 THR86 LEU87 ASP88 LEU89 GLN90 ASP91 ALA92 VAL93 LEU94 VAL95 GLY96 PHE97 SER98 MET99 GLY100 THR101 GLY102 GLU103 VAL104 ALA105 ARG106 TYR107 VAL108 SER109 SER110 TYR111 GLY112 THR113 ALA114 ARG115 ILE116 ALA117 ALA118 VAL119 ALA120 PHE121 LEU122 ALA123 SER124 LEU125 GLU126 PRO127 PHE128 LEU129 LEU130 LYS131 THR132 ASP133 ASP134 ASN135 PRO136 ASP137 GLY138 ALA139 ALA140 PRO141 GLN142 GLU143 PHE144 PHE145 ASP146 GLY147 ILE148 VAL149 ALA150 ALA151 VAL152 LYS153 ALA154 ASP155 ARG156 TYR157 ALA158 PHE159 TYR160 THR161 GLY162 PHE163 PHE164 ASN165 ASP166 PHE167 TYR168 ASN169 LEU170 ASP171 GLU172 ASN173 LEU174 GLY175 THR176 ARG177 ILE178 SER179 GLU180 GLU181 ALA182 VAL183 ARG184 ASN185 SER186 TRP187 ASN188 THR189 ALA190 ALA191 SER192 GLY193 GLY194 PHE195 PHE196 ALA197 ALA198 ALA199 ALA200 ALA201 PRO202 THR203 THR204 TRP205 TYR206 THR207 ASP208 PHE209 ARG210 ALA211 ASP212 ILE213 PRO214 ARG215 ILE216 ASP217 VAL218 PRO219 ALA220 LEU221 ILE222 LEU223 HIS224 GLY225 THR226 GLY227 ASP228 ARG229 THR230 LEU231 PRO232 ILE233 GLU234 ASN235 THR236 ALA237 ARG238 VAL239 PHE240 HIS241 LYS242 ALA243 LEU244 PRO245 SER246 ALA247 GLU248 TYR249 VAL250 GLU251 VAL252 GLU253 GLY254 ALA255 PRO256 HIS257 GLY258 LEU259 LEU260 TRP261 THR262 HIS263 ALA264 GLU265 GLU266 VAL267 ASN268 THR269 ALA270 LEU271 LEU272 ALA273 PHE274 LEU275 ALA276 LYS277 ALA278 LEU279 GLU280 ALA281 GLN282 LYS283 GLN284 LYS285 LEU286 LEU287 THR288 GLU289 VAL290 GLU291 THR292 TYR293 VAL294 LEU295 SER296 ILE297 ILE298 PRO299 SER300 GLY301 PRO302 LEU303 LYS304 ALA305 GLU306 ILE307 ALA308 GLN309 ARG310 LEU311 GLU312 ASP313 VAL314 PHE315 ALA316 GLY317 LYS318 ASN319 THR320 ASP321 LEU322 GLU323 VAL324 LEU325 MET326 GLU327 TRP328 LEU329 LYS330 THR331 ARG332 PRO333 ILE334 LEU335 SER336 PRO337 LEU338 THR339 LYS340 GLY341 ILE342 LEU343 GLY344 PHE345 VAL346 PHE347 THR348 LEU349 THR350 VAL351 PRO352 SER353 GLU354 ARG355 GLY356 LEU357 GLN358 ARG359 ARG360 ARG361 PHE362 VAL363 GLN364 ASN365 ALA366 LEU367 ASN368 GLY369 ASN370 GLY371 ASP372 PRO373 ASN374 ASN375 MET376 ASP377 LYS378 ALA379 VAL380 LYS381 LEU382 TYR383 ARG384 LYS385 LEU386 LYS387 ARG388 GLU389 ILE390 THR391 PHE392 HIS393 GLY394 ALA395 LYS396 GLU397 ILE398 SER399 LEU400 SER401 TYR402 SER403 ALA404 GLY405 ALA406 LEU407 ALA408 SER409 CYS410 MET411 GLY412 LEU413 ILE414 TYR415 ASN416 ARG417 MET418 GLY419 ALA420 VAL421 THR422 THR423 GLU424 VAL425 ALA426 PHE427 GLY428 LEU429 VAL430 CYS431 ALA432 THR433 CYS434 GLU435 GLN436 ILE437 ALA438
Unit 3 PRO1 PHE2 ILE3 THR4 VAL5 GLY6 GLN7 GLU8 ASN9 SER10 THR11 SER12 ILE13 ASP14 LEU15 TYR16 TYR17 GLU18 ASP19 HIS20 GLY21 THR22 GLY23 VAL24 PRO25 VAL26 VAL27 LEU28 ILE29 HIS30 GLY31 PHE32 PRO33 LEU34 SER35 GLY36 HIS37 SER38 TRP39 GLU40 ARG41 GLN42 SER43 ALA44 ALA45 LEU46 LEU47 ASP48 ALA49 GLY50 TYR51 ARG52 VAL53 ILE54 THR55 TYR56 ASP57 ARG58 ARG59 GLY60 PHE61 GLY62 GLN63 SER64 SER65 GLN66 PRO67 THR68 THR69 GLY70 TYR71 ASP72 TYR73 ASP74 THR75 PHE76 ALA77 ALA78 ASP79 LEU80 ASN81 THR82 VAL83 LEU84 GLU85 THR86 LEU87 ASP88 LEU89 GLN90 ASP91 ALA92 VAL93 LEU94 VAL95 GLY96 PHE97 SER98 MET99 GLY100 THR101 GLY102 GLU103 VAL104 ALA105 ARG106 TYR107 VAL108 SER109 SER110 TYR111 GLY112 THR113 ALA114 ARG115 ILE116 ALA117 ALA118 VAL119 ALA120 PHE121 LEU122 ALA123 SER124 LEU125 GLU126 PRO127 PHE128 LEU129 LEU130 LYS131 THR132 ASP133 ASP134 ASN135 PRO136 ASP137 GLY138 ALA139 ALA140 PRO141 GLN142 GLU143 PHE144 PHE145 ASP146 GLY147 ILE148 VAL149 ALA150 ALA151 VAL152 LYS153 ALA154 ASP155 ARG156 TYR157 ALA158 PHE159 TYR160 THR161 GLY162 PHE163 PHE164 ASN165 ASP166 PHE167 TYR168 ASN169 LEU170 ASP171 GLU172 ASN173 LEU174 GLY175 THR176 ARG177 ILE178 SER179 GLU180 GLU181 ALA182 VAL183 ARG184 ASN185 SER186 TRP187 ASN188 THR189 ALA190 ALA191 SER192 GLY193 GLY194 PHE195 PHE196 ALA197 ALA198 ALA199 ALA200 ALA201 PRO202 THR203 THR204 TRP205 TYR206 THR207 ASP208 PHE209 ARG210 ALA211 ASP212 ILE213 PRO214 ARG215 ILE216 ASP217 VAL218 PRO219 ALA220 LEU221 ILE222 LEU223 HIS224 GLY225 THR226 GLY227 ASP228 ARG229 THR230 LEU231 PRO232 ILE233 GLU234 ASN235 THR236 ALA237 ARG238 VAL239 PHE240 HIS241 LYS242 ALA243 LEU244 PRO245 SER246 ALA247 GLU248 TYR249 VAL250 GLU251 VAL252 GLU253 GLY254 ALA255 PRO256 HIS257 GLY258 LEU259 LEU260 TRP261 THR262 HIS263 ALA264 GLU265 GLU266 VAL267 ASN268 THR269 ALA270 LEU271 LEU272 ALA273 PHE274 LEU275 ALA276 LYS277 ALA278 LEU279 GLU280 ALA281 GLN282 LYS283 GLN284 LYS285 LEU286 LEU287 THR288 GLU289 VAL290 GLU291 THR292 TYR293 VAL294 LEU295 SER296 ILE297 ILE298 PRO299 SER300 GLY301 PRO302 LEU303 LYS304 ALA305 GLU306 ILE307 ALA308 GLN309 ARG310 LEU311 GLU312 ASP313 VAL314 PHE315 ALA316 GLY317 LYS318 ASN319 THR320 ASP321 LEU322 GLU323 VAL324 LEU325 MET326 GLU327 TRP328 LEU329 LYS330 THR331 ARG332 PRO333 ILE334 LEU335 SER336 PRO337 LEU338 THR339 LYS340 GLY341 ILE342 LEU343 GLY344 PHE345 VAL346 PHE347 THR348 LEU349 THR350 VAL351 PRO352 SER353 GLU354 ARG355 GLY356 LEU357 GLN358 ARG359 ARG360 ARG361 PHE362 VAL363 GLN364 ASN365 ALA366 LEU367 ASN368 GLY369 ASN370 GLY371 ASP372 PRO373 ASN374 ASN375 MET376 ASP377 LYS378 ALA379 VAL380 LYS381 LEU382 TYR383 ARG384 LYS385 LEU386 LYS387 ARG388 GLU389 ILE390 THR391 PHE392 HIS393 GLY394 ALA395 LYS396 GLU397 ILE398 SER399 LEU400 SER401 TYR402 SER403 ALA404 GLY405 ALA406 LEU407 ALA408 SER409 CYS410 MET411 GLY412 LEU413 ILE414 TYR415 ASN416 ARG417 MET418 GLY419 ALA420 VAL421 THR422 THR423 GLU424 VAL425 ALA426 PHE427 GLY428 LEU429 VAL430 CYS431 ALA432 THR433 CYS434 GLU435 GLN436 ILE437 ALA438
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany