3VB0 - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF 2,2',3-TRIHYDROXYBIPHENYL 1,2-DIOXYGENA DIBENZOFURAN-DEGRADING SPHINGOMONAS WITTICHII STRAIN RW1
• Keywords: TRANSLATIONAL NON-CRYSTALLOGRAPHIC SYMMETRY, HYPERSYMMETRY, CRYSTAL PACKING, EXTRADIOL DIOXYGENASE, OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3VB0	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein		A	289	2238	0
2	Protein		B	289	2238	0
3	Protein		C	289	2238	0
4	Protein		D	289	2238	0
5	Ligand		A	3	0	25
6	Ligand		B	3	0	25
7	Ligand		C	1	0	1
8	Ligand		D	1	0	1
9	Water			158	0	158
total				1322	8952	210

Proteins

Unit 1	SER 2 VAL 3 LYS 4 GLN 5 LEU 6 GLY 7 TYR 8 LEU 9 ILE 10 PHE 11 GLU 12 CYS 13 ARG 14 ALA 15 ASP 16 VAL 17 LEU 18 GLU 19 GLN 20 MET 21 VAL 22 VAL 23 VAL 24 TYR 25 GLN 26 ASP 27 ILE 28 ILE 29 GLY 30 ALA 31 VAL 32 VAL 33 GLU 34 ARG 35 ASP 36 GLU 37 GLY 38 GLY 39 ARG 40 ALA 41 LEU 42 VAL 43 ARG 44 LEU 45 ASP 46 GLY 47 ARG 48 PRO 49 PHE 50 ARG 51 ILE 52 ARG 53 LEU 54 ASP 55 PRO 56 GLY 57 PRO 58 ALA 59 ASN 60 ARG 61 LEU 62 ALA 63 ALA 64 ILE 65 GLY 66 TRP 67 ASN 68 VAL 69 ASP 70 PRO 71 SER 72 ASP 73 LEU 74 ALA 75 ALA 76 ILE 77 ALA 78 GLU 79 GLN 80 VAL 81 GLU 82 LYS 83 ALA 84 CYS 85 TYR 86 SER 87 VAL 88 VAL 89 THR 90 ALA 91 ASP 92 ALA 93 GLU 94 LEU 95 ALA 96 ALA 97 ASP 98 ARG 99 ALA 100 ALA 101 ALA 102 GLN 103 VAL 104 ARG 105 GLN 106 PHE 107 ALA 108 ASP 109 ASN 110 ASP 111 GLY 112 PHE 113 THR 114 HIS 115 GLU 116 LEU 117 TYR 118 VAL 119 GLU 120 SER 121 SER 122 PHE 123 PRO 124 THR 125 ASP 126 PRO 127 VAL 128 LEU 129 GLU 130 SER 131 LEU 132 PHE 133 VAL 134 CYS 135 GLY 136 GLU 137 GLU 138 ALA 139 ASN 140 GLY 141 ILE 142 PHE 143 GLY 144 LEU 145 GLY 146 HIS 147 LEU 148 VAL 149 VAL 150 ILE 151 VAL 152 ALA 153 ASP 154 ARG 155 ALA 156 LYS 157 THR 158 GLN 159 SER 160 PHE 161 PHE 162 THR 163 ASP 164 VAL 165 LEU 166 GLY 167 PHE 168 GLY 169 LEU 170 SER 171 ASP 172 ARG 173 VAL 174 THR 175 TRP 176 PRO 177 GLU 178 ALA 179 ASP 180 ILE 181 PHE 182 PHE 183 LEU 184 HIS 185 CYS 186 ASN 187 GLN 188 ARG 189 HIS 190 HIS 191 THR 192 VAL 193 ALA 194 LEU 195 SER 196 ALA 197 PRO 198 ALA 199 LEU 200 GLY 201 LEU 202 LYS 203 PRO 204 GLY 205 MET 206 VAL 207 HIS 208 HIS 209 LEU 210 MET 211 LEU 212 GLU 213 ALA 214 LYS 215 SER 216 LYS 217 GLU 218 GLN 219 VAL 220 ASP 221 ARG 222 ALA 223 PHE 224 ALA 225 ALA 226 VAL 227 LYS 228 ARG 229 LEU 230 GLY 231 TYR 232 ASP 233 VAL 234 LEU 235 MET 236 THR 237 ILE 238 GLY 239 GLN 240 HIS 241 SER 242 ASN 243 ASP 244 LYS 245 VAL 246 TYR 247 SER 248 PHE 249 TYR 250 MET 251 MET 252 ALA 253 PRO 254 ALA 255 GLY 256 PHE 257 ALA 258 VAL 259 GLU 260 LEU 261 GLY 262 PHE 263 GLY 264 GLY 265 GLN 266 VAL 267 ILE 268 GLY 269 ASP 270 LEU 271 GLU 272 SER 273 TRP 274 HIS 275 VAL 276 GLY 277 PHE 278 TYR 279 ASP 280 ALA 281 PRO 282 SER 283 ILE 284 TRP 285 GLY 286 HIS 287 GLU 288 LEU 289 GLN 290
Unit 2	SER 2 VAL 3 LYS 4 GLN 5 LEU 6 GLY 7 TYR 8 LEU 9 ILE 10 PHE 11 GLU 12 CYS 13 ARG 14 ALA 15 ASP 16 VAL 17 LEU 18 GLU 19 GLN 20 MET 21 VAL 22 VAL 23 VAL 24 TYR 25 GLN 26 ASP 27 ILE 28 ILE 29 GLY 30 ALA 31 VAL 32 VAL 33 GLU 34 ARG 35 ASP 36 GLU 37 GLY 38 GLY 39 ARG 40 ALA 41 LEU 42 VAL 43 ARG 44 LEU 45 ASP 46 GLY 47 ARG 48 PRO 49 PHE 50 ARG 51 ILE 52 ARG 53 LEU 54 ASP 55 PRO 56 GLY 57 PRO 58 ALA 59 ASN 60 ARG 61 LEU 62 ALA 63 ALA 64 ILE 65 GLY 66 TRP 67 ASN 68 VAL 69 ASP 70 PRO 71 SER 72 ASP 73 LEU 74 ALA 75 ALA 76 ILE 77 ALA 78 GLU 79 GLN 80 VAL 81 GLU 82 LYS 83 ALA 84 CYS 85 TYR 86 SER 87 VAL 88 VAL 89 THR 90 ALA 91 ASP 92 ALA 93 GLU 94 LEU 95 ALA 96 ALA 97 ASP 98 ARG 99 ALA 100 ALA 101 ALA 102 GLN 103 VAL 104 ARG 105 GLN 106 PHE 107 ALA 108 ASP 109 ASN 110 ASP 111 GLY 112 PHE 113 THR 114 HIS 115 GLU 116 LEU 117 TYR 118 VAL 119 GLU 120 SER 121 SER 122 PHE 123 PRO 124 THR 125 ASP 126 PRO 127 VAL 128 LEU 129 GLU 130 SER 131 LEU 132 PHE 133 VAL 134 CYS 135 GLY 136 GLU 137 GLU 138 ALA 139 ASN 140 GLY 141 ILE 142 PHE 143 GLY 144 LEU 145 GLY 146 HIS 147 LEU 148 VAL 149 VAL 150 ILE 151 VAL 152 ALA 153 ASP 154 ARG 155 ALA 156 LYS 157 THR 158 GLN 159 SER 160 PHE 161 PHE 162 THR 163 ASP 164 VAL 165 LEU 166 GLY 167 PHE 168 GLY 169 LEU 170 SER 171 ASP 172 ARG 173 VAL 174 THR 175 TRP 176 PRO 177 GLU 178 ALA 179 ASP 180 ILE 181 PHE 182 PHE 183 LEU 184 HIS 185 CYS 186 ASN 187 GLN 188 ARG 189 HIS 190 HIS 191 THR 192 VAL 193 ALA 194 LEU 195 SER 196 ALA 197 PRO 198 ALA 199 LEU 200 GLY 201 LEU 202 LYS 203 PRO 204 GLY 205 MET 206 VAL 207 HIS 208 HIS 209 LEU 210 MET 211 LEU 212 GLU 213 ALA 214 LYS 215 SER 216 LYS 217 GLU 218 GLN 219 VAL 220 ASP 221 ARG 222 ALA 223 PHE 224 ALA 225 ALA 226 VAL 227 LYS 228 ARG 229 LEU 230 GLY 231 TYR 232 ASP 233 VAL 234 LEU 235 MET 236 THR 237 ILE 238 GLY 239 GLN 240 HIS 241 SER 242 ASN 243 ASP 244 LYS 245 VAL 246 TYR 247 SER 248 PHE 249 TYR 250 MET 251 MET 252 ALA 253 PRO 254 ALA 255 GLY 256 PHE 257 ALA 258 VAL 259 GLU 260 LEU 261 GLY 262 PHE 263 GLY 264 GLY 265 GLN 266 VAL 267 ILE 268 GLY 269 ASP 270 LEU 271 GLU 272 SER 273 TRP 274 HIS 275 VAL 276 GLY 277 PHE 278 TYR 279 ASP 280 ALA 281 PRO 282 SER 283 ILE 284 TRP 285 GLY 286 HIS 287 GLU 288 LEU 289 GLN 290
Unit 3	SER 2 VAL 3 LYS 4 GLN 5 LEU 6 GLY 7 TYR 8 LEU 9 ILE 10 PHE 11 GLU 12 CYS 13 ARG 14 ALA 15 ASP 16 VAL 17 LEU 18 GLU 19 GLN 20 MET 21 VAL 22 VAL 23 VAL 24 TYR 25 GLN 26 ASP 27 ILE 28 ILE 29 GLY 30 ALA 31 VAL 32 VAL 33 GLU 34 ARG 35 ASP 36 GLU 37 GLY 38 GLY 39 ARG 40 ALA 41 LEU 42 VAL 43 ARG 44 LEU 45 ASP 46 GLY 47 ARG 48 PRO 49 PHE 50 ARG 51 ILE 52 ARG 53 LEU 54 ASP 55 PRO 56 GLY 57 PRO 58 ALA 59 ASN 60 ARG 61 LEU 62 ALA 63 ALA 64 ILE 65 GLY 66 TRP 67 ASN 68 VAL 69 ASP 70 PRO 71 SER 72 ASP 73 LEU 74 ALA 75 ALA 76 ILE 77 ALA 78 GLU 79 GLN 80 VAL 81 GLU 82 LYS 83 ALA 84 CYS 85 TYR 86 SER 87 VAL 88 VAL 89 THR 90 ALA 91 ASP 92 ALA 93 GLU 94 LEU 95 ALA 96 ALA 97 ASP 98 ARG 99 ALA 100 ALA 101 ALA 102 GLN 103 VAL 104 ARG 105 GLN 106 PHE 107 ALA 108 ASP 109 ASN 110 ASP 111 GLY 112 PHE 113 THR 114 HIS 115 GLU 116 LEU 117 TYR 118 VAL 119 GLU 120 SER 121 SER 122 PHE 123 PRO 124 THR 125 ASP 126 PRO 127 VAL 128 LEU 129 GLU 130 SER 131 LEU 132 PHE 133 VAL 134 CYS 135 GLY 136 GLU 137 GLU 138 ALA 139 ASN 140 GLY 141 ILE 142 PHE 143 GLY 144 LEU 145 GLY 146 HIS 147 LEU 148 VAL 149 VAL 150 ILE 151 VAL 152 ALA 153 ASP 154 ARG 155 ALA 156 LYS 157 THR 158 GLN 159 SER 160 PHE 161 PHE 162 THR 163 ASP 164 VAL 165 LEU 166 GLY 167 PHE 168 GLY 169 LEU 170 SER 171 ASP 172 ARG 173 VAL 174 THR 175 TRP 176 PRO 177 GLU 178 ALA 179 ASP 180 ILE 181 PHE 182 PHE 183 LEU 184 HIS 185 CYS 186 ASN 187 GLN 188 ARG 189 HIS 190 HIS 191 THR 192 VAL 193 ALA 194 LEU 195 SER 196 ALA 197 PRO 198 ALA 199 LEU 200 GLY 201 LEU 202 LYS 203 PRO 204 GLY 205 MET 206 VAL 207 HIS 208 HIS 209 LEU 210 MET 211 LEU 212 GLU 213 ALA 214 LYS 215 SER 216 LYS 217 GLU 218 GLN 219 VAL 220 ASP 221 ARG 222 ALA 223 PHE 224 ALA 225 ALA 226 VAL 227 LYS 228 ARG 229 LEU 230 GLY 231 TYR 232 ASP 233 VAL 234 LEU 235 MET 236 THR 237 ILE 238 GLY 239 GLN 240 HIS 241 SER 242 ASN 243 ASP 244 LYS 245 VAL 246 TYR 247 SER 248 PHE 249 TYR 250 MET 251 MET 252 ALA 253 PRO 254 ALA 255 GLY 256 PHE 257 ALA 258 VAL 259 GLU 260 LEU 261 GLY 262 PHE 263 GLY 264 GLY 265 GLN 266 VAL 267 ILE 268 GLY 269 ASP 270 LEU 271 GLU 272 SER 273 TRP 274 HIS 275 VAL 276 GLY 277 PHE 278 TYR 279 ASP 280 ALA 281 PRO 282 SER 283 ILE 284 TRP 285 GLY 286 HIS 287 GLU 288 LEU 289 GLN 290
Unit 4	SER 2 VAL 3 LYS 4 GLN 5 LEU 6 GLY 7 TYR 8 LEU 9 ILE 10 PHE 11 GLU 12 CYS 13 ARG 14 ALA 15 ASP 16 VAL 17 LEU 18 GLU 19 GLN 20 MET 21 VAL 22 VAL 23 VAL 24 TYR 25 GLN 26 ASP 27 ILE 28 ILE 29 GLY 30 ALA 31 VAL 32 VAL 33 GLU 34 ARG 35 ASP 36 GLU 37 GLY 38 GLY 39 ARG 40 ALA 41 LEU 42 VAL 43 ARG 44 LEU 45 ASP 46 GLY 47 ARG 48 PRO 49 PHE 50 ARG 51 ILE 52 ARG 53 LEU 54 ASP 55 PRO 56 GLY 57 PRO 58 ALA 59 ASN 60 ARG 61 LEU 62 ALA 63 ALA 64 ILE 65 GLY 66 TRP 67 ASN 68 VAL 69 ASP 70 PRO 71 SER 72 ASP 73 LEU 74 ALA 75 ALA 76 ILE 77 ALA 78 GLU 79 GLN 80 VAL 81 GLU 82 LYS 83 ALA 84 CYS 85 TYR 86 SER 87 VAL 88 VAL 89 THR 90 ALA 91 ASP 92 ALA 93 GLU 94 LEU 95 ALA 96 ALA 97 ASP 98 ARG 99 ALA 100 ALA 101 ALA 102 GLN 103 VAL 104 ARG 105 GLN 106 PHE 107 ALA 108 ASP 109 ASN 110 ASP 111 GLY 112 PHE 113 THR 114 HIS 115 GLU 116 LEU 117 TYR 118 VAL 119 GLU 120 SER 121 SER 122 PHE 123 PRO 124 THR 125 ASP 126 PRO 127 VAL 128 LEU 129 GLU 130 SER 131 LEU 132 PHE 133 VAL 134 CYS 135 GLY 136 GLU 137 GLU 138 ALA 139 ASN 140 GLY 141 ILE 142 PHE 143 GLY 144 LEU 145 GLY 146 HIS 147 LEU 148 VAL 149 VAL 150 ILE 151 VAL 152 ALA 153 ASP 154 ARG 155 ALA 156 LYS 157 THR 158 GLN 159 SER 160 PHE 161 PHE 162 THR 163 ASP 164 VAL 165 LEU 166 GLY 167 PHE 168 GLY 169 LEU 170 SER 171 ASP 172 ARG 173 VAL 174 THR 175 TRP 176 PRO 177 GLU 178 ALA 179 ASP 180 ILE 181 PHE 182 PHE 183 LEU 184 HIS 185 CYS 186 ASN 187 GLN 188 ARG 189 HIS 190 HIS 191 THR 192 VAL 193 ALA 194 LEU 195 SER 196 ALA 197 PRO 198 ALA 199 LEU 200 GLY 201 LEU 202 LYS 203 PRO 204 GLY 205 MET 206 VAL 207 HIS 208 HIS 209 LEU 210 MET 211 LEU 212 GLU 213 ALA 214 LYS 215 SER 216 LYS 217 GLU 218 GLN 219 VAL 220 ASP 221 ARG 222 ALA 223 PHE 224 ALA 225 ALA 226 VAL 227 LYS 228 ARG 229 LEU 230 GLY 231 TYR 232 ASP 233 VAL 234 LEU 235 MET 236 THR 237 ILE 238 GLY 239 GLN 240 HIS 241 SER 242 ASN 243 ASP 244 LYS 245 VAL 246 TYR 247 SER 248 PHE 249 TYR 250 MET 251 MET 252 ALA 253 PRO 254 ALA 255 GLY 256 PHE 257 ALA 258 VAL 259 GLU 260 LEU 261 GLY 262 PHE 263 GLY 264 GLY 265 GLN 266 VAL 267 ILE 268 GLY 269 ASP 270 LEU 271 GLU 272 SER 273 TRP 274 HIS 275 VAL 276 GLY 277 PHE 278 TYR 279 ASP 280 ALA 281 PRO 282 SER 283 ILE 284 TRP 285 GLY 286 HIS 287 GLU 288 LEU 289 GLN 290

Ligands

Unit 5	FE2 301 P6G 302 SO4 303
Unit 6	FE2 301 P6G 302 SO4 303
Unit 7	FE2 300
Unit 8	FE2 300