3VAB - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF DIAMINOPIMELATE DECARBOXYLASE FROM BRUC MELITENSIS BOUND TO PLP
• Keywords: STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, PYRIDOXAL-PHOSPHATE, DIAMINOPIM DECARBOXYLASE, DIAMINOPIMELIC ACID DECARBOXYLASE, MESO- DIAMINOPIMELATE DECARBOXYLASE,DAP-DECARBOXYLASE, MESO-2,6- DIAMINOHEPTANEDIOATE CARBOXY-LYASE, LYASE, LYSINE BIOSYNTHE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3VAB	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	DIAMINOPIMELATE DECARBOXYLASE 1	A	420	3171	24
2	Protein	DIAMINOPIMELATE DECARBOXYLASE 1	B	420	3169	24
3	Ligand	DIAMINOPIMELATE DECARBOXYLASE 1	A	3	0	13
4	Ligand	DIAMINOPIMELATE DECARBOXYLASE 1	B	1	0	4
5	Water			725	0	725
total				1569	6340	790

Proteins

Unit 1

GLY -3 PRO -2 GLY -1 SER 0 MET 1 VAL 2 ASN 3 HIS 4 PHE 5 GLU 6 TYR 7 ARG 8 ASN 9 GLY 10 VAL 11 LEU 12 HIS 13 ALA 14 GLU 15 ASN 16 VAL 17 SER 18 LEU 19 PRO 20 GLU 21 ILE 22 ALA 23 LYS 24 ALA 25 VAL 26 GLY 27 THR 28 PRO 29 PHE 30 TYR 31 VAL 32 TYR 33 SER 34 ARG 35 ALA 36 THR 37 ILE 38 GLU 39 ARG 40 HIS 41 PHE 42 ARG 43 VAL 44 PHE 45 HIS 46 ASP 47 ALA 48 PHE 49 ALA 50 ASP 51 MET 52 ASP 53 THR 54 LEU 55 VAL 56 THR 57 TYR 58 ALA 59 LEU 60 LLP 61 ALA 62 ASN 63 SER 64 ASN 65 GLN 66 ALA 67 VAL 68 LEU 69 THR 70 ALA 71 LEU 72 ALA 73 LYS 74 LEU 75 GLY 76 ALA 77 GLY 78 ALA 79 ASP 80 THR 81 VAL 82 SER 83 GLN 84 GLY 85 GLU 86 ILE 87 ARG 88 ARG 89 ALA 90 LEU 91 ALA 92 ALA 93 GLY 94 ILE 95 PRO 96 ALA 97 ASN 98 ARG 99 ILE 100 VAL 101 PHE 102 SER 103 GLY 104 VAL 105 GLY 106 LYS 107 THR 108 PRO 109 ARG 110 GLU 111 MET 112 ASP 113 PHE 114 ALA 115 LEU 116 GLU 117 ALA 118 GLY 119 ILE 120 TYR 121 CYS 122 PHE 123 ASN 124 VAL 125 GLU 126 SER 127 GLU 128 PRO 129 GLU 130 LEU 131 GLU 132 ILE 133 LEU 134 SER 135 ALA 136 ARG 137 ALA 138 VAL 139 ALA 140 ALA 141 GLY 142 LYS 143 VAL 144 ALA 145 PRO 146 VAL 147 SER 148 LEU 149 ARG 150 ILE 151 ASN 152 PRO 153 ASP 154 VAL 155 ASP 156 ALA 157 LYS 158 THR 159 HIS 160 ALA 161 LYS 162 ILE 163 LYS 167 SER 168 GLU 169 ASN 170 LYS 171 PHE 172 GLY 173 ILE 174 PRO 175 ARG 176 ASP 177 LYS 178 ALA 179 ARG 180 ALA 181 ALA 182 TYR 183 ALA 184 ARG 185 ALA 186 ALA 187 SER 188 LEU 189 PRO 190 GLY 191 LEU 192 ASN 193 VAL 194 VAL 195 GLY 196 ILE 197 ASP 198 MET 199 HIS 200 ILE 201 GLY 202 SER 203 GLN 204 ILE 205 ILE 206 ASP 207 LEU 208 GLU 209 PRO 210 PHE 211 ASP 212 ASN 213 ALA 214 PHE 215 ALA 216 LEU 217 MET 218 ALA 219 GLU 220 LEU 221 VAL 222 LYS 223 GLU 224 LEU 225 GLN 226 ALA 227 ASP 228 GLY 229 HIS 230 ASN 231 ILE 232 ARG 233 HIS 234 VAL 235 ASP 236 VAL 237 GLY 238 GLY 239 GLY 240 LEU 241 GLY 242 ILE 243 PRO 244 TYR 245 ARG 246 THR 247 PRO 251 PRO 252 PRO 253 PRO 254 PRO 255 VAL 256 ALA 257 TYR 258 ALA 259 GLN 260 ILE 261 VAL 262 ALA 263 LYS 264 HIS 265 ILE 266 LYS 267 PRO 268 LEU 269 GLY 270 LEU 271 LYS 272 THR 273 VAL 274 PHE 275 GLU 276 PRO 277 GLY 278 ARG 279 LEU 280 ILE 281 VAL 282 GLY 283 ASN 284 ALA 285 GLY 286 LEU 287 LEU 288 VAL 289 THR 290 GLU 291 VAL 292 ILE 293 PHE 294 VAL 295 LYS 296 GLU 297 GLY 298 ASP 299 ALA 300 LYS 301 ASN 302 PHE 303 VAL 304 ILE 305 VAL 306 ASP 307 ALA 308 ALA 309 MET 310 ASN 311 ASP 312 LEU 313 ILE 314 ARG 315 PRO 316 THR 317 LEU 318 TYR 319 ASP 320 ALA 321 PHE 322 HIS 323 ASP 324 ILE 325 ARG 326 PRO 327 VAL 328 ILE 329 MET 330 PRO 331 ASN 332 ASP 333 ASN 334 ALA 335 PRO 336 ARG 337 ILE 338 ARG 339 ALA 340 ASP 341 PHE 342 VAL 343 GLY 344 PRO 345 VAL 346 CYS 347 GLU 348 THR 349 GLY 350 ASP 351 TYR 352 LEU 353 GLY 354 LEU 355 ASP 356 ARG 357 GLU 358 VAL 359 ALA 360 LYS 361 PRO 362 ALA 363 PRO 364 GLY 365 ASP 366 LEU 367 ILE 368 ALA 369 ILE 370 CYS 371 THR 372 THR 373 GLY 374 ALA 375 TYR 376 GLY 377 ALA 378 VAL 379 LEU 380 SER 381 SER 382 THR 383 TYR 384 ASN 385 SER 386 ARG 387 LEU 388 LEU 389 ILE 390 PRO 391 GLU 392 VAL 393 LEU 394 GLY 395 ASP 396 GLY 397 GLU 398 ARG 399 TYR 400 HIS 401 VAL 402 VAL 403 ARG 404 PRO 405 ARG 406 ARG 407 THR 408 TYR 409 GLU 410 GLU 411 LEU 412 LEU 413 ALA 414 LEU 415 ASP 416 SER 417 VAL 418 PRO 419 ASP 420 TRP 421 LEU 422

Unit 2

GLY -3 PRO -2 GLY -1 SER 0 MET 1 VAL 2 ASN 3 HIS 4 PHE 5 GLU 6 TYR 7 ARG 8 ASN 9 GLY 10 VAL 11 LEU 12 HIS 13 ALA 14 GLU 15 ASN 16 VAL 17 SER 18 LEU 19 PRO 20 GLU 21 ILE 22 ALA 23 LYS 24 ALA 25 VAL 26 GLY 27 THR 28 PRO 29 PHE 30 TYR 31 VAL 32 TYR 33 SER 34 ARG 35 ALA 36 THR 37 ILE 38 GLU 39 ARG 40 HIS 41 PHE 42 ARG 43 VAL 44 PHE 45 HIS 46 ASP 47 ALA 48 PHE 49 ALA 50 ASP 51 MET 52 ASP 53 THR 54 LEU 55 VAL 56 THR 57 TYR 58 ALA 59 LEU 60 LLP 61 ALA 62 ASN 63 SER 64 ASN 65 GLN 66 ALA 67 VAL 68 LEU 69 THR 70 ALA 71 LEU 72 ALA 73 LYS 74 LEU 75 GLY 76 ALA 77 GLY 78 ALA 79 ASP 80 THR 81 VAL 82 SER 83 GLN 84 GLY 85 GLU 86 ILE 87 ARG 88 ARG 89 ALA 90 LEU 91 ALA 92 ALA 93 GLY 94 ILE 95 PRO 96 ALA 97 ASN 98 ARG 99 ILE 100 VAL 101 PHE 102 SER 103 GLY 104 VAL 105 GLY 106 LYS 107 THR 108 PRO 109 ARG 110 GLU 111 MET 112 ASP 113 PHE 114 ALA 115 LEU 116 GLU 117 ALA 118 GLY 119 ILE 120 TYR 121 CYS 122 PHE 123 ASN 124 VAL 125 GLU 126 SER 127 GLU 128 PRO 129 GLU 130 LEU 131 GLU 132 ILE 133 LEU 134 SER 135 ALA 136 ARG 137 ALA 138 VAL 139 ALA 140 ALA 141 GLY 142 LYS 143 VAL 144 ALA 145 PRO 146 VAL 147 SER 148 LEU 149 ARG 150 ILE 151 ASN 152 PRO 153 ASP 154 VAL 155 ASP 156 ALA 157 LYS 158 THR 159 HIS 160 ALA 161 LYS 162 ILE 163 LYS 167 SER 168 GLU 169 ASN 170 LYS 171 PHE 172 GLY 173 ILE 174 PRO 175 ARG 176 ASP 177 LYS 178 ALA 179 ARG 180 ALA 181 ALA 182 TYR 183 ALA 184 ARG 185 ALA 186 ALA 187 SER 188 LEU 189 PRO 190 GLY 191 LEU 192 ASN 193 VAL 194 VAL 195 GLY 196 ILE 197 ASP 198 MET 199 HIS 200 ILE 201 GLY 202 SER 203 GLN 204 ILE 205 ILE 206 ASP 207 LEU 208 GLU 209 PRO 210 PHE 211 ASP 212 ASN 213 ALA 214 PHE 215 ALA 216 LEU 217 MET 218 ALA 219 GLU 220 LEU 221 VAL 222 LYS 223 GLU 224 LEU 225 GLN 226 ALA 227 ASP 228 GLY 229 HIS 230 ASN 231 ILE 232 ARG 233 HIS 234 VAL 235 ASP 236 VAL 237 GLY 238 GLY 239 GLY 240 LEU 241 GLY 242 ILE 243 PRO 244 TYR 245 ARG 246 THR 247 PRO 251 PRO 252 PRO 253 PRO 254 PRO 255 VAL 256 ALA 257 TYR 258 ALA 259 GLN 260 ILE 261 VAL 262 ALA 263 LYS 264 HIS 265 ILE 266 LYS 267 PRO 268 LEU 269 GLY 270 LEU 271 LYS 272 THR 273 VAL 274 PHE 275 GLU 276 PRO 277 GLY 278 ARG 279 LEU 280 ILE 281 VAL 282 GLY 283 ASN 284 ALA 285 GLY 286 LEU 287 LEU 288 VAL 289 THR 290 GLU 291 VAL 292 ILE 293 PHE 294 VAL 295 LYS 296 GLU 297 GLY 298 ASP 299 ALA 300 LYS 301 ASN 302 PHE 303 VAL 304 ILE 305 VAL 306 ASP 307 ALA 308 ALA 309 MET 310 ASN 311 ASP 312 LEU 313 ILE 314 ARG 315 PRO 316 THR 317 LEU 318 TYR 319 ASP 320 ALA 321 PHE 322 HIS 323 ASP 324 ILE 325 ARG 326 PRO 327 VAL 328 ILE 329 MET 330 PRO 331 ASN 332 ASP 333 ASN 334 ALA 335 PRO 336 ARG 337 ILE 338 ARG 339 ALA 340 ASP 341 PHE 342 VAL 343 GLY 344 PRO 345 VAL 346 CYS 347 GLU 348 THR 349 GLY 350 ASP 351 TYR 352 LEU 353 GLY 354 LEU 355 ASP 356 ARG 357 GLU 358 VAL 359 ALA 360 LYS 361 PRO 362 ALA 363 PRO 364 GLY 365 ASP 366 LEU 367 ILE 368 ALA 369 ILE 370 CYS 371 THR 372 THR 373 GLY 374 ALA 375 TYR 376 GLY 377 ALA 378 VAL 379 LEU 380 SER 381 SER 382 THR 383 TYR 384 ASN 385 SER 386 ARG 387 LEU 388 LEU 389 ILE 390 PRO 391 GLU 392 VAL 393 LEU 394 GLY 395 ASP 396 GLY 397 GLU 398 ARG 399 TYR 400 HIS 401 VAL 402 VAL 403 ARG 404 PRO 405 ARG 406 ARG 407 THR 408 TYR 409 GLU 410 GLU 411 LEU 412 LEU 413 ALA 414 LEU 415 ASP 416 SER 417 VAL 418 PRO 419 ASP 420 TRP 421 LEU 422

Ligands

Unit 3	SO4 423 EDO 424 EDO 425
Unit 4	EDO 423