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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF RNASE T IN COMPLEX WITH A PREFERRED SSD WITH TWO MG IN THE ACTIVE SITE
Keywords DEDD NUCLEASES FAMILY, EXO-NUCLEASE, HYDROLASE-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3V9X     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   RIBONUCLEASE T  A 211 1623 0
2  Protein   RIBONUCLEASE T  B 212 1631 0
3  Protein   RIBONUCLEASE T  C 203 1564 0
4  Protein   RIBONUCLEASE T  D 204 1569 0
5  Other macromolecule   DNA (5'-D(*TP*TP*AP*TP*AP*AP*A)-3')  E 4 83 0
6  Other macromolecule   DNA (5'-D(*TP*TP*AP*TP*AP*AP*A)-3')  F 3 63 0
7  Other macromolecule   DNA (5'-D(*TP*TP*AP*TP*AP*AP*A)-3')  G 3 63 0
8  Other macromolecule   DNA (5'-D(*TP*TP*AP*TP*AP*AP*A)-3')  H 3 63 0
9  Ligand   RIBONUCLEASE T  A 1 0 1
10  Ligand   RIBONUCLEASE T  B 1 0 1
11  Ligand   RIBONUCLEASE T  C 1 0 1
12  Ligand   RIBONUCLEASE T  D 1 0 1
13  Ligand   DNA (5'-D(*TP*TP*AP*TP*AP*AP*A)-3')  E 1 0 1
14  Ligand   DNA (5'-D(*TP*TP*AP*TP*AP*AP*A)-3')  F 1 0 1
15  Ligand   DNA (5'-D(*TP*TP*AP*TP*AP*AP*A)-3')  G 1 0 1
16  Ligand   DNA (5'-D(*TP*TP*AP*TP*AP*AP*A)-3')  H 1 0 1
17 Water     524 0 524
total       1375 6659 532
Proteins
Unit 1 ALA5 GLN6 LEU7 THR8 GLY9 LEU10 CYS11 ASP12 ARG13 PHE14 ARG15 GLY16 PHE17 TYR18 PRO19 VAL20 VAL21 ILE22 ASP23 VAL24 GLU25 THR26 ALA27 GLY28 PHE29 ASN30 ALA31 LYS32 THR33 ASP34 ALA35 LEU36 LEU37 GLU38 ILE39 ALA40 ALA41 ILE42 THR43 LEU44 LYS45 MET46 ASP47 GLU48 GLN49 GLY50 TRP51 LEU52 MET53 PRO54 ASP55 THR56 THR57 LEU58 HIS59 PHE60 HIS61 VAL62 GLU63 PRO64 PHE65 VAL66 GLY67 ALA68 ASN69 LEU70 GLN71 PRO72 GLU73 ALA74 LEU75 ALA76 PHE77 ASN78 GLY79 ILE80 ASP81 PRO82 ASN83 ASP84 PRO85 ASP86 ARG87 GLY88 ALA89 VAL90 SER91 GLU92 TYR93 GLU94 ALA95 LEU96 HIS97 GLU98 ILE99 PHE100 LYS101 VAL102 VAL103 ARG104 LYS105 GLY106 ILE107 LYS108 ALA109 SER110 GLY111 CYS112 ASN113 ARG114 ALA115 ILE116 MET117 VAL118 ALA119 HIS120 ASN121 ALA122 ASN123 PHE124 ASP125 HIS126 SER127 PHE128 MET129 MET130 ALA131 ALA132 ALA133 GLU134 ARG135 ALA136 SER137 LEU138 LYS139 ARG140 ASN141 PRO142 PHE143 HIS144 PRO145 PHE146 ALA147 THR148 PHE149 ASP150 THR151 ALA152 ALA153 LEU154 ALA155 GLY156 LEU157 ALA158 LEU159 GLY160 GLN161 THR162 VAL163 LEU164 SER165 LYS166 ALA167 CYS168 GLN169 THR170 ALA171 GLY172 MET173 ASP174 PHE175 ASP176 SER177 THR178 GLN179 ALA180 HIS181 SER182 ALA183 LEU184 TYR185 ASP186 THR187 GLU188 ARG189 THR190 ALA191 VAL192 LEU193 PHE194 CYS195 GLU196 ILE197 VAL198 ASN199 ARG200 TRP201 LYS202 ARG203 LEU204 GLY205 GLY206 TRP207 PRO208 LEU209 SER210 ALA211 ALA212 GLU213 GLU214 VAL215
Unit 2 ASN4 ALA5 GLN6 LEU7 THR8 GLY9 LEU10 CYS11 ASP12 ARG13 PHE14 ARG15 GLY16 PHE17 TYR18 PRO19 VAL20 VAL21 ILE22 ASP23 VAL24 GLU25 THR26 ALA27 GLY28 PHE29 ASN30 ALA31 LYS32 THR33 ASP34 ALA35 LEU36 LEU37 GLU38 ILE39 ALA40 ALA41 ILE42 THR43 LEU44 LYS45 MET46 ASP47 GLU48 GLN49 GLY50 TRP51 LEU52 MET53 PRO54 ASP55 THR56 THR57 LEU58 HIS59 PHE60 HIS61 VAL62 GLU63 PRO64 PHE65 VAL66 GLY67 ALA68 ASN69 LEU70 GLN71 PRO72 GLU73 ALA74 LEU75 ALA76 PHE77 ASN78 GLY79 ILE80 ASP81 PRO82 ASN83 ASP84 PRO85 ASP86 ARG87 GLY88 ALA89 VAL90 SER91 GLU92 TYR93 GLU94 ALA95 LEU96 HIS97 GLU98 ILE99 PHE100 LYS101 VAL102 VAL103 ARG104 LYS105 GLY106 ILE107 LYS108 ALA109 SER110 GLY111 CYS112 ASN113 ARG114 ALA115 ILE116 MET117 VAL118 ALA119 HIS120 ASN121 ALA122 ASN123 PHE124 ASP125 HIS126 SER127 PHE128 MET129 MET130 ALA131 ALA132 ALA133 GLU134 ARG135 ALA136 SER137 LEU138 LYS139 ARG140 ASN141 PRO142 PHE143 HIS144 PRO145 PHE146 ALA147 THR148 PHE149 ASP150 THR151 ALA152 ALA153 LEU154 ALA155 GLY156 LEU157 ALA158 LEU159 GLY160 GLN161 THR162 VAL163 LEU164 SER165 LYS166 ALA167 CYS168 GLN169 THR170 ALA171 GLY172 MET173 ASP174 PHE175 ASP176 SER177 THR178 GLN179 ALA180 HIS181 SER182 ALA183 LEU184 TYR185 ASP186 THR187 GLU188 ARG189 THR190 ALA191 VAL192 LEU193 PHE194 CYS195 GLU196 ILE197 VAL198 ASN199 ARG200 TRP201 LYS202 ARG203 LEU204 GLY205 GLY206 TRP207 PRO208 LEU209 SER210 ALA211 ALA212 GLU213 GLU214 VAL215
Unit 3 GLY9 LEU10 CYS11 ASP12 ARG13 PHE14 ARG15 GLY16 PHE17 TYR18 PRO19 VAL20 VAL21 ILE22 ASP23 VAL24 GLU25 THR26 ALA27 GLY28 PHE29 ASN30 ALA31 LYS32 THR33 ASP34 ALA35 LEU36 LEU37 GLU38 ILE39 ALA40 ALA41 ILE42 THR43 LEU44 LYS45 MET46 ASP47 GLU48 GLN49 GLY50 TRP51 LEU52 MET53 PRO54 ASP55 THR56 THR57 LEU58 HIS59 PHE60 HIS61 VAL62 GLU63 PRO64 PHE65 VAL66 GLY67 ALA68 ASN69 LEU70 GLN71 PRO72 GLU73 ALA74 LEU75 ALA76 PHE77 ASN78 GLY79 ILE80 ASP81 PRO82 ASN83 ASP84 PRO85 ASP86 ARG87 GLY88 ALA89 VAL90 SER91 GLU92 TYR93 GLU94 ALA95 LEU96 HIS97 GLU98 ILE99 PHE100 LYS101 VAL102 VAL103 ARG104 LYS105 GLY106 ILE107 LYS108 ALA109 SER110 GLY111 CYS112 ASN113 ARG114 ALA115 ILE116 MET117 VAL118 ALA119 HIS120 ASN121 ALA122 ASN123 PHE124 ASP125 HIS126 SER127 PHE128 MET129 MET130 ALA131 ALA132 ALA133 GLU134 ARG135 ALA136 SER137 LEU138 LYS139 ARG140 ASN141 PRO142 PHE143 HIS144 PRO145 PHE146 ALA147 THR148 PHE149 ASP150 THR151 ALA152 ALA153 LEU154 ALA155 GLY156 LEU157 ALA158 LEU159 GLY160 GLN161 THR162 VAL163 LEU164 SER165 LYS166 ALA167 CYS168 GLN169 THR170 ALA171 GLY172 MET173 ASP174 PHE175 ASP176 SER177 THR178 GLN179 ALA180 HIS181 SER182 ALA183 LEU184 TYR185 ASP186 THR187 GLU188 ARG189 THR190 ALA191 VAL192 LEU193 PHE194 CYS195 GLU196 ILE197 VAL198 ASN199 ARG200 TRP201 LYS202 ARG203 LEU204 GLY205 GLY206 TRP207 PRO208 LEU209 SER210 ALA211
Unit 4 GLY9 LEU10 CYS11 ASP12 ARG13 PHE14 ARG15 GLY16 PHE17 TYR18 PRO19 VAL20 VAL21 ILE22 ASP23 VAL24 GLU25 THR26 ALA27 GLY28 PHE29 ASN30 ALA31 LYS32 THR33 ASP34 ALA35 LEU36 LEU37 GLU38 ILE39 ALA40 ALA41 ILE42 THR43 LEU44 LYS45 MET46 ASP47 GLU48 GLN49 GLY50 TRP51 LEU52 MET53 PRO54 ASP55 THR56 THR57 LEU58 HIS59 PHE60 HIS61 VAL62 GLU63 PRO64 PHE65 VAL66 GLY67 ALA68 ASN69 LEU70 GLN71 PRO72 GLU73 ALA74 LEU75 ALA76 PHE77 ASN78 GLY79 ILE80 ASP81 PRO82 ASN83 ASP84 PRO85 ASP86 ARG87 GLY88 ALA89 VAL90 SER91 GLU92 TYR93 GLU94 ALA95 LEU96 HIS97 GLU98 ILE99 PHE100 LYS101 VAL102 VAL103 ARG104 LYS105 GLY106 ILE107 LYS108 ALA109 SER110 GLY111 CYS112 ASN113 ARG114 ALA115 ILE116 MET117 VAL118 ALA119 HIS120 ASN121 ALA122 ASN123 PHE124 ASP125 HIS126 SER127 PHE128 MET129 MET130 ALA131 ALA132 ALA133 GLU134 ARG135 ALA136 SER137 LEU138 LYS139 ARG140 ASN141 PRO142 PHE143 HIS144 PRO145 PHE146 ALA147 THR148 PHE149 ASP150 THR151 ALA152 ALA153 LEU154 ALA155 GLY156 LEU157 ALA158 LEU159 GLY160 GLN161 THR162 VAL163 LEU164 SER165 LYS166 ALA167 CYS168 GLN169 THR170 ALA171 GLY172 MET173 ASP174 PHE175 ASP176 SER177 THR178 GLN179 ALA180 HIS181 SER182 ALA183 LEU184 TYR185 ASP186 THR187 GLU188 ARG189 THR190 ALA191 VAL192 LEU193 PHE194 CYS195 GLU196 ILE197 VAL198 ASN199 ARG200 TRP201 LYS202 ARG203 LEU204 GLY205 GLY206 TRP207 PRO208 LEU209 SER210 ALA211 ALA212
Other macromolecules
Unit 5 DT4 DA5 DA6 DA7
Unit 6 DA5 DA6 DA7
Unit 7 DA5 DA6 DA7
Unit 8 DA5 DA6 DA7
Ligands
Unit 9 MG301
Unit 10 MG301
Unit 11 MG301
Unit 12 MG301
Unit 13 MG101
Unit 14 MG101
Unit 15 MG101
Unit 16 MG101
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany