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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF PUF-6 IN COMPLEX WITH 5BE13 RNA
Keywords PUF REPEATS, RNA BINDING PROTEIN-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3V71     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   PUF (PUMILIO/FBF) DOMAIN-CONTAINING PROTEIN 7, CO TRANSCRIPT EVIDENCE  A 364 2926 0
2  RNA    B 7 145 0
3  Ligand    B 1 0 15
total       372 3071 15

Proteins
Unit 1 ILE82 SER83 LEU84 GLU85 ASP86 VAL87 LEU88 LEU89 ASN90 GLY91 GLN92 LEU93 ILE94 ASP95 PHE96 ALA97 ILE98 ASP99 PRO100 SER101 GLY102 VAL103 LYS104 PHE105 LEU106 GLU107 ALA108 ASN109 TYR110 PRO111 LEU112 ASP113 SER114 GLU115 ASP116 GLN117 ILE118 ARG119 LYS120 ALA121 VAL122 PHE123 GLU124 LYS125 PHE126 THR127 GLU128 SER129 THR130 THR131 LEU132 PHE133 VAL134 GLY135 LEU136 CYS137 HIS138 SER139 ARG140 ASN141 GLY142 ASN143 PHE144 ILE145 VAL146 GLN147 LYS148 LEU149 VAL150 GLU151 LEU152 ALA153 THR154 PRO155 ALA156 GLU157 GLN158 ARG159 GLU160 LEU161 LEU162 ARG163 GLN164 MET165 ILE166 ASP167 GLY168 GLY169 LEU170 LEU171 ALA172 MET173 CYS174 LYS175 ASP176 LYS177 PHE178 ALA179 CYS180 ARG181 VAL182 VAL183 GLN184 LEU185 ALA186 LEU187 GLN188 LYS189 PHE190 ASP191 HIS192 SER193 ASN194 VAL195 PHE196 GLN197 LEU198 ILE199 GLN200 GLU201 LEU202 SER203 THR204 PHE205 ASP206 LEU207 ALA208 ALA209 MET210 CYS211 THR212 ASP213 GLN214 ILE215 SER216 ILE217 HIS218 VAL219 ILE220 GLN221 ARG222 VAL223 VAL224 LYS225 GLN226 LEU227 PRO228 VAL229 ASP230 MET231 TRP232 THR233 PHE234 PHE235 VAL236 HIS237 PHE238 LEU239 SER240 SER241 GLY242 ASP243 SER244 LEU245 MET246 ALA247 VAL248 CYS249 GLN250 ASP251 LYS252 TYR253 GLY254 CYS255 ARG256 LEU257 VAL258 GLN259 GLN260 VAL261 ILE262 ASP263 ARG264 LEU265 ALA266 GLU267 ASN268 PRO269 LYS270 LEU271 PRO272 CYS273 PHE274 LYS275 PHE276 ARG277 ILE278 GLN279 LEU280 LEU281 HIS282 SER283 LEU284 MET285 THR286 CYS287 ILE288 VAL289 ARG290 ASN291 CYS292 TYR293 ARG294 LEU295 SER296 SER297 ASN298 GLU299 PHE300 ALA301 ASN302 TYR303 VAL304 ILE305 GLN306 TYR307 VAL308 ILE309 LYS310 SER311 SER312 GLY313 ILE314 MET315 GLU316 MET317 TYR318 ARG319 ASP320 THR321 ILE322 ILE323 ASP324 LYS325 CYS326 LEU327 LEU328 ARG329 ASN330 LEU331 LEU332 SER333 MET334 SER335 GLN336 ASP337 LYS338 TYR339 ALA340 SER341 HIS342 VAL343 ILE344 GLU345 GLY346 ALA347 PHE348 LEU349 PHE350 ALA351 PRO352 PRO353 ALA354 LEU355 LEU356 HIS357 GLU358 MET359 MET360 GLU361 GLU362 ILE363 PHE364 SER365 VAL368 LYS369 ASP370 VAL371 GLU372 SER373 ASN374 ARG375 ASP376 ALA377 LEU378 ASP379 ILE380 LEU381 LEU382 PHE383 HIS384 GLN385 TYR386 GLY387 ASN388 TYR389 VAL390 VAL391 GLN392 GLN393 MET394 ILE395 SER396 ILE397 CYS398 THR399 ALA400 ALA401 LEU402 ILE403 GLU409 LEU410 PRO411 PRO412 ALA413 ILE414 LEU415 LEU416 LEU417 TYR418 SER419 GLY420 TRP421 TYR422 GLU423 LYS424 MET425 LYS426 GLN427 ARG428 VAL429 LEU430 GLN431 HIS432 ALA433 SER434 ARG435 LEU436 GLU437 ARG438 PHE439 SER440 SER441 GLY442 LYS443 LYS444 ILE445 ILE446 ASP447 SER448 VAL449 MET450 ARG451 HIS452

Nucleic acids
Unit 2 C1 U3 G4 U5 A6 U7 C8

Ligands
Unit 3 EPE13

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany