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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF AGRIN AND LRP4
Keywords BETA PROPELLER, LAMININ-G, SIGNALING, PROTEIN BINDING
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3V64     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein    C 338 2700 0
2  Protein   AGRIN  A 191 1470 0
3  Protein   AGRIN  B 190 1465 0
4  Protein    D 334 2673 0
5  Ligand    C 5 0 39
6  Ligand   AGRIN  A 2 0 6
7  Ligand   AGRIN  B 2 0 6
8  Ligand    D 2 0 2
9 Water     110 0 110
total       1174 8308 163
Proteins
Unit 1 TYR404 CYS405 SER406 GLN407 GLY408 CYS409 THR410 ASN411 SER412 PHE416 GLN417 CYS418 TRP419 CYS420 GLU421 ALA422 GLY423 TYR424 GLU425 LEU426 ARG427 PRO428 ASP429 ARG430 ARG431 SER432 CYS433 LYS434 ALA435 LEU436 GLY437 PRO438 GLU439 PRO440 VAL441 LEU442 LEU443 PHE444 ALA445 ASN446 ARG447 ILE448 ASP449 ILE450 ARG451 GLN452 VAL453 LEU454 PRO455 HIS456 ARG457 SER458 GLU459 TYR460 THR461 LEU462 LEU463 LEU464 ASN465 ASN466 LEU467 GLU468 ASN469 ALA470 ILE471 ALA472 LEU473 ASP474 PHE475 HIS476 HIS477 ARG478 ARG479 GLU480 LEU481 VAL482 PHE483 TRP484 SER485 ASP486 VAL487 THR488 LEU489 ASP490 ARG491 ILE492 LEU493 ARG494 ALA495 ASN496 LEU497 ASN498 GLY499 SER500 ASN501 VAL502 GLU503 GLU504 VAL505 VAL506 SER507 THR508 GLY509 LEU510 GLU511 SER512 PRO513 GLY514 GLY515 LEU516 ALA517 VAL518 ASP519 TRP520 VAL521 HIS522 ASP523 LYS524 LEU525 TYR526 TRP527 THR528 ASP529 SER530 GLY531 THR532 SER533 ARG534 ILE535 GLU536 VAL537 ALA538 ASN539 LEU540 ASP541 GLY542 ALA543 HIS544 ARG545 LYS546 VAL547 LEU548 LEU549 TRP550 GLN551 SER552 LEU553 GLU554 LYS555 PRO556 ARG557 ALA558 ILE559 ALA560 LEU561 HIS562 PRO563 MET564 GLU565 GLY566 THR567 ILE568 TYR569 TRP570 THR571 ASP572 TRP573 GLY574 ASN575 THR576 PRO577 ARG578 ILE579 GLU580 ALA581 SER582 SER583 MET584 ASP585 GLY586 SER587 GLY588 ARG589 ARG590 ILE591 ILE592 ALA593 ASP594 THR595 HIS596 LEU597 PHE598 TRP599 PRO600 ASN601 GLY602 LEU603 THR604 ILE605 ASP606 TYR607 ALA608 GLY609 ARG610 ARG611 MET612 TYR613 TRP614 VAL615 ASP616 ALA617 LYS618 HIS619 HIS620 VAL621 ILE622 GLU623 ARG624 ALA625 ASN626 LEU627 ASP628 GLY629 SER630 HIS631 ARG632 LYS633 ALA634 VAL635 ILE636 SER637 GLN638 GLY639 LEU640 PRO641 HIS642 PRO643 PHE644 ALA645 ILE646 THR647 VAL648 PHE649 GLU650 ASP651 SER652 LEU653 TYR654 TRP655 THR656 ASP657 TRP658 HIS659 THR660 LYS661 SER662 ILE663 ASN664 SER665 ALA666 ASN667 LYS668 PHE669 THR670 GLY671 LYS672 ASN673 GLN674 GLU675 ILE676 ILE677 ARG678 ASN679 LYS680 LEU681 HIS682 PHE683 PRO684 MET685 ASP686 ILE687 HIS688 THR689 LEU690 HIS691 PRO692 GLN693 ARG694 GLN695 PRO696 ALA697 GLY698 LYS699 ASN700 ARG701 CYS702 GLY703 ASP704 ASN705 ASN706 GLY707 GLY708 CYS709 THR710 HIS711 LEU712 CYS713 LEU714 PRO715 SER716 GLY717 GLN718 ASN719 TYR720 THR721 CYS722 ALA723 CYS724 PRO725 THR726 GLY727 PHE728 ARG729 LYS730 ILE731 ASN732 SER733 HIS734 ALA735 CYS736 ALA737 LEU738 GLU739 VAL740 LEU741 PHE742 GLN743 GLY744
Unit 2 ALA1758 LEU1759 GLU1760 THR1761 LEU1762 ALA1763 PHE1764 ASP1765 GLY1766 ARG1767 THR1768 TYR1769 ILE1770 GLU1771 TYR1772 LEU1773 ASN1774 ALA1775 VAL1776 ILE1777 GLU1778 SER1779 GLU1780 LEU1781 THR1782 ASN1783 GLU1784 ILE1785 PRO1786 ALA1787 GLU1788 LYS1789 ALA1790 LEU1791 GLN1792 SER1793 ASN1794 HIS1795 PHE1796 GLU1797 LEU1798 SER1799 LEU1800 ARG1801 THR1802 GLU1803 ALA1804 THR1805 GLN1806 GLY1807 LEU1808 VAL1809 LEU1810 TRP1811 ILE1812 GLY1813 LYS1814 ALA1815 ALA1816 GLU1817 ARG1818 ALA1819 ASP1820 TYR1821 MET1822 ALA1823 LEU1824 ALA1825 ILE1826 VAL1827 ASP1828 GLY1829 HIS1830 LEU1831 GLN1832 LEU1833 SER1834 TYR1835 ASP1836 LEU1837 GLY1838 SER1839 GLN1840 PRO1841 VAL1842 VAL1843 LEU1844 ARG1845 SER1846 THR1847 VAL1848 LYS1849 VAL1850 ASN1851 THR1852 ASN1853 ARG1854 TRP1855 LEU1856 ARG1857 ILE1858 ARG1859 ALA1860 HIS1861 ARG1862 GLU1863 HIS1864 ARG1865 GLU1866 GLY1867 SER1868 LEU1869 GLN1870 VAL1871 GLY1872 ASN1873 GLU1874 ALA1875 PRO1876 VAL1877 THR1878 GLY1879 SER1880 SER1881 PRO1882 LEU1883 GLY1884 ALA1885 THR1886 GLN1887 LEU1888 ASP1889 THR1890 ASP1891 GLY1892 ALA1893 LEU1894 TRP1895 LEU1896 GLY1897 GLY1898 LEU1899 GLN1900 LYS1901 LEU1902 PRO1903 VAL1904 GLY1905 GLN1906 ALA1907 LEU1908 PRO1909 LYS1910 ALA1911 TYR1912 GLY1913 THR1914 GLY1915 PHE1916 VAL1917 GLY1918 CYS1919 LEU1920 ARG1921 ASP1922 VAL1923 VAL1924 VAL1925 GLY1926 HIS1927 ARG1928 GLN1929 LEU1930 HIS1931 LEU1932 LEU1933 GLU1934 ASP1935 ALA1936 VAL1937 THR1938 LYS1939 PRO1940 GLU1941 LEU1942 ARG1943 PRO1944 CYS1945 PRO1946 THR1947 PRO1948
Unit 3 LEU1759 GLU1760 THR1761 LEU1762 ALA1763 PHE1764 ASP1765 GLY1766 ARG1767 THR1768 TYR1769 ILE1770 GLU1771 TYR1772 LEU1773 ASN1774 ALA1775 VAL1776 ILE1777 GLU1778 SER1779 GLU1780 LEU1781 THR1782 ASN1783 GLU1784 ILE1785 PRO1786 ALA1787 GLU1788 LYS1789 ALA1790 LEU1791 GLN1792 SER1793 ASN1794 HIS1795 PHE1796 GLU1797 LEU1798 SER1799 LEU1800 ARG1801 THR1802 GLU1803 ALA1804 THR1805 GLN1806 GLY1807 LEU1808 VAL1809 LEU1810 TRP1811 ILE1812 GLY1813 LYS1814 ALA1815 ALA1816 GLU1817 ARG1818 ALA1819 ASP1820 TYR1821 MET1822 ALA1823 LEU1824 ALA1825 ILE1826 VAL1827 ASP1828 GLY1829 HIS1830 LEU1831 GLN1832 LEU1833 SER1834 TYR1835 ASP1836 LEU1837 GLY1838 SER1839 GLN1840 PRO1841 VAL1842 VAL1843 LEU1844 ARG1845 SER1846 THR1847 VAL1848 LYS1849 VAL1850 ASN1851 THR1852 ASN1853 ARG1854 TRP1855 LEU1856 ARG1857 ILE1858 ARG1859 ALA1860 HIS1861 ARG1862 GLU1863 HIS1864 ARG1865 GLU1866 GLY1867 SER1868 LEU1869 GLN1870 VAL1871 GLY1872 ASN1873 GLU1874 ALA1875 PRO1876 VAL1877 THR1878 GLY1879 SER1880 SER1881 PRO1882 LEU1883 GLY1884 ALA1885 THR1886 GLN1887 LEU1888 ASP1889 THR1890 ASP1891 GLY1892 ALA1893 LEU1894 TRP1895 LEU1896 GLY1897 GLY1898 LEU1899 GLN1900 LYS1901 LEU1902 PRO1903 VAL1904 GLY1905 GLN1906 ALA1907 LEU1908 PRO1909 LYS1910 ALA1911 TYR1912 GLY1913 THR1914 GLY1915 PHE1916 VAL1917 GLY1918 CYS1919 LEU1920 ARG1921 ASP1922 VAL1923 VAL1924 VAL1925 GLY1926 HIS1927 ARG1928 GLN1929 LEU1930 HIS1931 LEU1932 LEU1933 GLU1934 ASP1935 ALA1936 VAL1937 THR1938 LYS1939 PRO1940 GLU1941 LEU1942 ARG1943 PRO1944 CYS1945 PRO1946 THR1947 PRO1948
Unit 4 TYR404 CYS405 SER406 GLN407 GLY408 CYS409 THR410 PHE416 GLN417 CYS418 TRP419 CYS420 GLU421 ALA422 GLY423 TYR424 GLU425 LEU426 ARG427 PRO428 ASP429 ARG430 ARG431 SER432 CYS433 LYS434 ALA435 LEU436 GLY437 PRO438 GLU439 PRO440 VAL441 LEU442 LEU443 PHE444 ALA445 ASN446 ARG447 ILE448 ASP449 ILE450 ARG451 GLN452 VAL453 LEU454 PRO455 HIS456 ARG457 SER458 GLU459 TYR460 THR461 LEU462 LEU463 LEU464 ASN465 ASN466 LEU467 GLU468 ASN469 ALA470 ILE471 ALA472 LEU473 ASP474 PHE475 HIS476 HIS477 ARG478 ARG479 GLU480 LEU481 VAL482 PHE483 TRP484 SER485 ASP486 VAL487 THR488 LEU489 ASP490 ARG491 ILE492 LEU493 ARG494 ALA495 ASN496 LEU497 ASN498 GLY499 SER500 ASN501 VAL502 GLU503 GLU504 VAL505 VAL506 SER507 THR508 GLY509 LEU510 GLU511 SER512 PRO513 GLY514 GLY515 LEU516 ALA517 VAL518 ASP519 TRP520 VAL521 HIS522 ASP523 LYS524 LEU525 TYR526 TRP527 THR528 ASP529 SER530 GLY531 THR532 SER533 ARG534 ILE535 GLU536 VAL537 ALA538 ASN539 LEU540 ASP541 GLY542 ALA543 HIS544 ARG545 LYS546 VAL547 LEU548 LEU549 TRP550 GLN551 SER552 LEU553 GLU554 LYS555 PRO556 ARG557 ALA558 ILE559 ALA560 LEU561 HIS562 PRO563 MET564 GLU565 GLY566 THR567 ILE568 TYR569 TRP570 THR571 ASP572 TRP573 GLY574 ASN575 THR576 PRO577 ARG578 ILE579 GLU580 ALA581 SER582 SER583 MET584 ASP585 GLY586 SER587 GLY588 ARG589 ARG590 ILE591 ILE592 ALA593 ASP594 THR595 HIS596 LEU597 PHE598 TRP599 PRO600 ASN601 GLY602 LEU603 THR604 ILE605 ASP606 TYR607 ALA608 GLY609 ARG610 ARG611 MET612 TYR613 TRP614 VAL615 ASP616 ALA617 LYS618 HIS619 HIS620 VAL621 ILE622 GLU623 ARG624 ALA625 ASN626 LEU627 ASP628 GLY629 SER630 HIS631 ARG632 LYS633 ALA634 VAL635 ILE636 SER637 GLN638 GLY639 LEU640 PRO641 HIS642 PRO643 PHE644 ALA645 ILE646 THR647 VAL648 PHE649 GLU650 ASP651 SER652 LEU653 TYR654 TRP655 THR656 ASP657 TRP658 HIS659 THR660 LYS661 SER662 ILE663 ASN664 SER665 ALA666 ASN667 LYS668 PHE669 THR670 GLY671 LYS672 ASN673 GLN674 GLU675 ILE676 ILE677 ARG678 ASN679 LYS680 LEU681 HIS682 PHE683 PRO684 MET685 ASP686 ILE687 HIS688 THR689 LEU690 HIS691 PRO692 GLN693 ARG694 GLN695 PRO696 ALA697 GLY698 LYS699 ASN700 ARG701 CYS702 GLY703 ASP704 ASN705 ASN706 GLY707 GLY708 CYS709 THR710 HIS711 LEU712 CYS713 LEU714 PRO715 SER716 GLY717 GLN718 ASN719 TYR720 THR721 CYS722 ALA723 CYS724 PRO725 THR726 GLY727 PHE728 ARG729 LYS730 ILE731 ASN732 SER733 HIS734 ALA735 CYS736 ALA737 LEU738 GLU739 VAL740 LEU741 PHE742
Ligands
Unit 5 NAG801 NAG802 CA803 PO4804 PO4805
Unit 6 CA2001 PO42002
Unit 7 CA2001 PO42002
Unit 8 CA801 CA802
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany