3V1Y - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURES OF GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENA COMPLEXES WITH NAD
• Keywords: ROSSMANN FOLD, GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (NAD (PHOSPHORYLATING) ACTIVITY, NAD(H) BINDING, OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3V1Y	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein		O	336	2554	0
2	Protein		A	335	2550	0
3	Protein		B	336	2554	0
4	Protein		C	336	2554	0
5	Ligand		O	1	0	44
6	Ligand		A	1	0	44
7	Ligand		B	1	0	44
8	Ligand		C	1	0	44
9	Water			329	0	329
total				1676	10212	505

Proteins

Unit 1	GLY 2 LYS 3 ILE 4 LYS 5 ILE 6 GLY 7 ILE 8 ASN 9 GLY 10 PHE 11 GLY 12 ARG 13 ILE 14 GLY 15 ARG 16 LEU 17 VAL 18 ALA 19 ARG 20 VAL 21 ALA 22 LEU 23 GLN 24 SER 25 GLU 26 ASP 27 VAL 28 GLU 29 LEU 30 VAL 31 ALA 32 VAL 33 ASN 34 ASP 35 PRO 36 PHE 37 ILE 38 THR 39 THR 40 ASP 41 TYR 42 MET 43 THR 44 TYR 45 MET 46 PHE 47 LYS 48 TYR 49 ASP 50 THR 51 VAL 52 HIS 53 GLY 54 GLN 55 TRP 56 LYS 57 HIS 58 SER 59 ASP 60 ILE 61 LYS 62 ILE 63 LYS 64 ASP 65 SER 66 LYS 67 THR 68 LEU 69 LEU 70 LEU 71 GLY 72 GLU 73 LYS 74 PRO 75 VAL 76 THR 77 VAL 78 PHE 79 GLY 80 ILE 81 ARG 82 ASN 83 PRO 84 ASP 85 GLU 86 ILE 87 PRO 88 TRP 89 ALA 90 GLU 91 ALA 92 GLY 93 ALA 94 GLU 95 TYR 96 VAL 97 VAL 98 GLU 99 SER 100 THR 101 GLY 102 VAL 103 PHE 104 THR 105 ASP 106 LYS 107 GLU 108 LYS 109 ALA 110 ALA 111 ALA 112 HIS 113 LEU 114 LYS 115 GLY 116 GLY 117 ALA 118 LYS 119 LYS 120 VAL 121 VAL 122 ILE 123 SER 124 ALA 125 PRO 126 SER 127 LYS 128 ASP 129 ALA 130 PRO 131 MET 132 PHE 133 VAL 134 CYS 135 GLY 136 VAL 137 ASN 138 GLU 139 ASP 140 LYS 141 TYR 142 THR 143 SER 144 ASP 145 ILE 146 ASP 147 ILE 148 VAL 149 SER 150 ASN 151 ALA 152 SER 153 CYS 154 THR 155 THR 156 ASN 157 CYS 158 LEU 159 ALA 160 PRO 161 LEU 162 ALA 163 LYS 164 VAL 165 ILE 166 HIS 167 ASP 168 ASN 169 PHE 170 GLY 171 ILE 172 ILE 173 GLU 174 GLY 175 LEU 176 MET 177 THR 178 THR 179 VAL 180 HIS 181 ALA 182 ILE 183 THR 184 ALA 185 THR 186 GLN 187 LYS 188 THR 189 VAL 190 ASP 191 GLY 192 PRO 193 SER 194 SER 195 LYS 196 ASP 197 TRP 198 ARG 199 GLY 200 GLY 201 ARG 202 ALA 203 ALA 204 SER 205 PHE 206 ASN 207 ILE 208 ILE 209 PRO 210 SER 211 SER 212 THR 213 GLY 214 ALA 215 ALA 216 LYS 217 ALA 218 VAL 219 GLY 220 LYS 221 VAL 222 LEU 223 PRO 224 ASP 225 LEU 226 ASN 227 GLY 228 LYS 229 LEU 230 THR 231 GLY 232 MET 233 SER 234 PHE 235 ARG 236 VAL 237 PRO 238 THR 239 VAL 240 ASP 241 VAL 242 SER 243 VAL 244 VAL 245 ASP 246 LEU 247 THR 248 VAL 249 ARG 250 ILE 251 GLU 252 LYS 253 ALA 254 ALA 255 SER 256 TYR 257 ASP 258 ALA 259 ILE 260 LYS 261 SER 262 ALA 263 ILE 264 LYS 265 SER 266 ALA 267 SER 268 GLU 269 GLY 270 LYS 271 LEU 272 LYS 273 GLY 274 ILE 275 ILE 276 GLY 277 TYR 278 VAL 279 GLU 280 GLU 281 ASP 282 LEU 283 VAL 284 SER 285 THR 286 ASP 287 PHE 288 VAL 289 GLY 290 ASP 291 SER 292 ARG 293 SER 294 SER 295 ILE 296 PHE 297 ASP 298 ALA 299 LYS 300 ALA 301 GLY 302 ILE 303 ALA 304 LEU 305 ASN 306 ASP 307 ASN 308 PHE 309 VAL 310 LYS 311 LEU 312 VAL 313 ALA 314 TRP 315 TYR 316 ASP 317 ASN 318 GLU 319 TRP 320 GLY 321 TYR 322 SER 323 ASN 324 ARG 325 VAL 326 ILE 327 ASP 328 LEU 329 ILE 330 ARG 331 HIS 332 MET 333 ALA 334 LYS 335 THR 336 GLN 337
Unit 2	LYS 3 ILE 4 LYS 5 ILE 6 GLY 7 ILE 8 ASN 9 GLY 10 PHE 11 GLY 12 ARG 13 ILE 14 GLY 15 ARG 16 LEU 17 VAL 18 ALA 19 ARG 20 VAL 21 ALA 22 LEU 23 GLN 24 SER 25 GLU 26 ASP 27 VAL 28 GLU 29 LEU 30 VAL 31 ALA 32 VAL 33 ASN 34 ASP 35 PRO 36 PHE 37 ILE 38 THR 39 THR 40 ASP 41 TYR 42 MET 43 THR 44 TYR 45 MET 46 PHE 47 LYS 48 TYR 49 ASP 50 THR 51 VAL 52 HIS 53 GLY 54 GLN 55 TRP 56 LYS 57 HIS 58 SER 59 ASP 60 ILE 61 LYS 62 ILE 63 LYS 64 ASP 65 SER 66 LYS 67 THR 68 LEU 69 LEU 70 LEU 71 GLY 72 GLU 73 LYS 74 PRO 75 VAL 76 THR 77 VAL 78 PHE 79 GLY 80 ILE 81 ARG 82 ASN 83 PRO 84 ASP 85 GLU 86 ILE 87 PRO 88 TRP 89 ALA 90 GLU 91 ALA 92 GLY 93 ALA 94 GLU 95 TYR 96 VAL 97 VAL 98 GLU 99 SER 100 THR 101 GLY 102 VAL 103 PHE 104 THR 105 ASP 106 LYS 107 GLU 108 LYS 109 ALA 110 ALA 111 ALA 112 HIS 113 LEU 114 LYS 115 GLY 116 GLY 117 ALA 118 LYS 119 LYS 120 VAL 121 VAL 122 ILE 123 SER 124 ALA 125 PRO 126 SER 127 LYS 128 ASP 129 ALA 130 PRO 131 MET 132 PHE 133 VAL 134 CYS 135 GLY 136 VAL 137 ASN 138 GLU 139 ASP 140 LYS 141 TYR 142 THR 143 SER 144 ASP 145 ILE 146 ASP 147 ILE 148 VAL 149 SER 150 ASN 151 ALA 152 SER 153 CYS 154 THR 155 THR 156 ASN 157 CYS 158 LEU 159 ALA 160 PRO 161 LEU 162 ALA 163 LYS 164 VAL 165 ILE 166 HIS 167 ASP 168 ASN 169 PHE 170 GLY 171 ILE 172 ILE 173 GLU 174 GLY 175 LEU 176 MET 177 THR 178 THR 179 VAL 180 HIS 181 ALA 182 ILE 183 THR 184 ALA 185 THR 186 GLN 187 LYS 188 THR 189 VAL 190 ASP 191 GLY 192 PRO 193 SER 194 SER 195 LYS 196 ASP 197 TRP 198 ARG 199 GLY 200 GLY 201 ARG 202 ALA 203 ALA 204 SER 205 PHE 206 ASN 207 ILE 208 ILE 209 PRO 210 SER 211 SER 212 THR 213 GLY 214 ALA 215 ALA 216 LYS 217 ALA 218 VAL 219 GLY 220 LYS 221 VAL 222 LEU 223 PRO 224 ASP 225 LEU 226 ASN 227 GLY 228 LYS 229 LEU 230 THR 231 GLY 232 MET 233 SER 234 PHE 235 ARG 236 VAL 237 PRO 238 THR 239 VAL 240 ASP 241 VAL 242 SER 243 VAL 244 VAL 245 ASP 246 LEU 247 THR 248 VAL 249 ARG 250 ILE 251 GLU 252 LYS 253 ALA 254 ALA 255 SER 256 TYR 257 ASP 258 ALA 259 ILE 260 LYS 261 SER 262 ALA 263 ILE 264 LYS 265 SER 266 ALA 267 SER 268 GLU 269 GLY 270 LYS 271 LEU 272 LYS 273 GLY 274 ILE 275 ILE 276 GLY 277 TYR 278 VAL 279 GLU 280 GLU 281 ASP 282 LEU 283 VAL 284 SER 285 THR 286 ASP 287 PHE 288 VAL 289 GLY 290 ASP 291 SER 292 ARG 293 SER 294 SER 295 ILE 296 PHE 297 ASP 298 ALA 299 LYS 300 ALA 301 GLY 302 ILE 303 ALA 304 LEU 305 ASN 306 ASP 307 ASN 308 PHE 309 VAL 310 LYS 311 LEU 312 VAL 313 ALA 314 TRP 315 TYR 316 ASP 317 ASN 318 GLU 319 TRP 320 GLY 321 TYR 322 SER 323 ASN 324 ARG 325 VAL 326 ILE 327 ASP 328 LEU 329 ILE 330 ARG 331 HIS 332 MET 333 ALA 334 LYS 335 THR 336 GLN 337
Unit 3	GLY 2 LYS 3 ILE 4 LYS 5 ILE 6 GLY 7 ILE 8 ASN 9 GLY 10 PHE 11 GLY 12 ARG 13 ILE 14 GLY 15 ARG 16 LEU 17 VAL 18 ALA 19 ARG 20 VAL 21 ALA 22 LEU 23 GLN 24 SER 25 GLU 26 ASP 27 VAL 28 GLU 29 LEU 30 VAL 31 ALA 32 VAL 33 ASN 34 ASP 35 PRO 36 PHE 37 ILE 38 THR 39 THR 40 ASP 41 TYR 42 MET 43 THR 44 TYR 45 MET 46 PHE 47 LYS 48 TYR 49 ASP 50 THR 51 VAL 52 HIS 53 GLY 54 GLN 55 TRP 56 LYS 57 HIS 58 SER 59 ASP 60 ILE 61 LYS 62 ILE 63 LYS 64 ASP 65 SER 66 LYS 67 THR 68 LEU 69 LEU 70 LEU 71 GLY 72 GLU 73 LYS 74 PRO 75 VAL 76 THR 77 VAL 78 PHE 79 GLY 80 ILE 81 ARG 82 ASN 83 PRO 84 ASP 85 GLU 86 ILE 87 PRO 88 TRP 89 ALA 90 GLU 91 ALA 92 GLY 93 ALA 94 GLU 95 TYR 96 VAL 97 VAL 98 GLU 99 SER 100 THR 101 GLY 102 VAL 103 PHE 104 THR 105 ASP 106 LYS 107 GLU 108 LYS 109 ALA 110 ALA 111 ALA 112 HIS 113 LEU 114 LYS 115 GLY 116 GLY 117 ALA 118 LYS 119 LYS 120 VAL 121 VAL 122 ILE 123 SER 124 ALA 125 PRO 126 SER 127 LYS 128 ASP 129 ALA 130 PRO 131 MET 132 PHE 133 VAL 134 CYS 135 GLY 136 VAL 137 ASN 138 GLU 139 ASP 140 LYS 141 TYR 142 THR 143 SER 144 ASP 145 ILE 146 ASP 147 ILE 148 VAL 149 SER 150 ASN 151 ALA 152 SER 153 CYS 154 THR 155 THR 156 ASN 157 CYS 158 LEU 159 ALA 160 PRO 161 LEU 162 ALA 163 LYS 164 VAL 165 ILE 166 HIS 167 ASP 168 ASN 169 PHE 170 GLY 171 ILE 172 ILE 173 GLU 174 GLY 175 LEU 176 MET 177 THR 178 THR 179 VAL 180 HIS 181 ALA 182 ILE 183 THR 184 ALA 185 THR 186 GLN 187 LYS 188 THR 189 VAL 190 ASP 191 GLY 192 PRO 193 SER 194 SER 195 LYS 196 ASP 197 TRP 198 ARG 199 GLY 200 GLY 201 ARG 202 ALA 203 ALA 204 SER 205 PHE 206 ASN 207 ILE 208 ILE 209 PRO 210 SER 211 SER 212 THR 213 GLY 214 ALA 215 ALA 216 LYS 217 ALA 218 VAL 219 GLY 220 LYS 221 VAL 222 LEU 223 PRO 224 ASP 225 LEU 226 ASN 227 GLY 228 LYS 229 LEU 230 THR 231 GLY 232 MET 233 SER 234 PHE 235 ARG 236 VAL 237 PRO 238 THR 239 VAL 240 ASP 241 VAL 242 SER 243 VAL 244 VAL 245 ASP 246 LEU 247 THR 248 VAL 249 ARG 250 ILE 251 GLU 252 LYS 253 ALA 254 ALA 255 SER 256 TYR 257 ASP 258 ALA 259 ILE 260 LYS 261 SER 262 ALA 263 ILE 264 LYS 265 SER 266 ALA 267 SER 268 GLU 269 GLY 270 LYS 271 LEU 272 LYS 273 GLY 274 ILE 275 ILE 276 GLY 277 TYR 278 VAL 279 GLU 280 GLU 281 ASP 282 LEU 283 VAL 284 SER 285 THR 286 ASP 287 PHE 288 VAL 289 GLY 290 ASP 291 SER 292 ARG 293 SER 294 SER 295 ILE 296 PHE 297 ASP 298 ALA 299 LYS 300 ALA 301 GLY 302 ILE 303 ALA 304 LEU 305 ASN 306 ASP 307 ASN 308 PHE 309 VAL 310 LYS 311 LEU 312 VAL 313 ALA 314 TRP 315 TYR 316 ASP 317 ASN 318 GLU 319 TRP 320 GLY 321 TYR 322 SER 323 ASN 324 ARG 325 VAL 326 ILE 327 ASP 328 LEU 329 ILE 330 ARG 331 HIS 332 MET 333 ALA 334 LYS 335 THR 336 GLN 337
Unit 4	GLY 2 LYS 3 ILE 4 LYS 5 ILE 6 GLY 7 ILE 8 ASN 9 GLY 10 PHE 11 GLY 12 ARG 13 ILE 14 GLY 15 ARG 16 LEU 17 VAL 18 ALA 19 ARG 20 VAL 21 ALA 22 LEU 23 GLN 24 SER 25 GLU 26 ASP 27 VAL 28 GLU 29 LEU 30 VAL 31 ALA 32 VAL 33 ASN 34 ASP 35 PRO 36 PHE 37 ILE 38 THR 39 THR 40 ASP 41 TYR 42 MET 43 THR 44 TYR 45 MET 46 PHE 47 LYS 48 TYR 49 ASP 50 THR 51 VAL 52 HIS 53 GLY 54 GLN 55 TRP 56 LYS 57 HIS 58 SER 59 ASP 60 ILE 61 LYS 62 ILE 63 LYS 64 ASP 65 SER 66 LYS 67 THR 68 LEU 69 LEU 70 LEU 71 GLY 72 GLU 73 LYS 74 PRO 75 VAL 76 THR 77 VAL 78 PHE 79 GLY 80 ILE 81 ARG 82 ASN 83 PRO 84 ASP 85 GLU 86 ILE 87 PRO 88 TRP 89 ALA 90 GLU 91 ALA 92 GLY 93 ALA 94 GLU 95 TYR 96 VAL 97 VAL 98 GLU 99 SER 100 THR 101 GLY 102 VAL 103 PHE 104 THR 105 ASP 106 LYS 107 GLU 108 LYS 109 ALA 110 ALA 111 ALA 112 HIS 113 LEU 114 LYS 115 GLY 116 GLY 117 ALA 118 LYS 119 LYS 120 VAL 121 VAL 122 ILE 123 SER 124 ALA 125 PRO 126 SER 127 LYS 128 ASP 129 ALA 130 PRO 131 MET 132 PHE 133 VAL 134 CYS 135 GLY 136 VAL 137 ASN 138 GLU 139 ASP 140 LYS 141 TYR 142 THR 143 SER 144 ASP 145 ILE 146 ASP 147 ILE 148 VAL 149 SER 150 ASN 151 ALA 152 SER 153 CYS 154 THR 155 THR 156 ASN 157 CYS 158 LEU 159 ALA 160 PRO 161 LEU 162 ALA 163 LYS 164 VAL 165 ILE 166 HIS 167 ASP 168 ASN 169 PHE 170 GLY 171 ILE 172 ILE 173 GLU 174 GLY 175 LEU 176 MET 177 THR 178 THR 179 VAL 180 HIS 181 ALA 182 ILE 183 THR 184 ALA 185 THR 186 GLN 187 LYS 188 THR 189 VAL 190 ASP 191 GLY 192 PRO 193 SER 194 SER 195 LYS 196 ASP 197 TRP 198 ARG 199 GLY 200 GLY 201 ARG 202 ALA 203 ALA 204 SER 205 PHE 206 ASN 207 ILE 208 ILE 209 PRO 210 SER 211 SER 212 THR 213 GLY 214 ALA 215 ALA 216 LYS 217 ALA 218 VAL 219 GLY 220 LYS 221 VAL 222 LEU 223 PRO 224 ASP 225 LEU 226 ASN 227 GLY 228 LYS 229 LEU 230 THR 231 GLY 232 MET 233 SER 234 PHE 235 ARG 236 VAL 237 PRO 238 THR 239 VAL 240 ASP 241 VAL 242 SER 243 VAL 244 VAL 245 ASP 246 LEU 247 THR 248 VAL 249 ARG 250 ILE 251 GLU 252 LYS 253 ALA 254 ALA 255 SER 256 TYR 257 ASP 258 ALA 259 ILE 260 LYS 261 SER 262 ALA 263 ILE 264 LYS 265 SER 266 ALA 267 SER 268 GLU 269 GLY 270 LYS 271 LEU 272 LYS 273 GLY 274 ILE 275 ILE 276 GLY 277 TYR 278 VAL 279 GLU 280 GLU 281 ASP 282 LEU 283 VAL 284 SER 285 THR 286 ASP 287 PHE 288 VAL 289 GLY 290 ASP 291 SER 292 ARG 293 SER 294 SER 295 ILE 296 PHE 297 ASP 298 ALA 299 LYS 300 ALA 301 GLY 302 ILE 303 ALA 304 LEU 305 ASN 306 ASP 307 ASN 308 PHE 309 VAL 310 LYS 311 LEU 312 VAL 313 ALA 314 TRP 315 TYR 316 ASP 317 ASN 318 GLU 319 TRP 320 GLY 321 TYR 322 SER 323 ASN 324 ARG 325 VAL 326 ILE 327 ASP 328 LEU 329 ILE 330 ARG 331 HIS 332 MET 333 ALA 334 LYS 335 THR 336 GLN 337

Ligands

Unit 5	NAD 401
Unit 6	NAD 401
Unit 7	NAD 401
Unit 8	NAD 401