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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF THE TERNARY INITIATION COMPLEX AIF2:GDPNP:METHI INITIATOR TRNA
Keywords GTP BINDING MODULE, INITIATOR TRNA CARRIER, GTP AND TRNA, TRANSLATION-RNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3V11     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   TRANSLATION INITIATION FACTOR 2 SUBUNIT GAMMA  A 404 3131 0
2  Protein   TRANSLATION INITIATION FACTOR 2 SUBUNIT ALPHA  B 254 2033 0
3  Protein   TRANSLATION INITIATION FACTOR 2 SUBUNIT BETA  C 17 146 0
4  RNA    D 76 1522 102
5  Ligand   TRANSLATION INITIATION FACTOR 2 SUBUNIT GAMMA  A 2 0 33
6  Protein   INITIATOR TRNA  D 1 0 8
total       754 6832 143
Proteins
Unit 1 GLN7 PRO8 GLU9 VAL10 ASN11 ILE12 GLY13 VAL14 VAL15 GLY16 HIS17 VAL18 ASP19 HIS20 GLY21 LYS22 THR23 THR24 LEU25 VAL26 GLN27 ALA28 ILE29 THR30 GLY31 ILE32 TRP33 THR34 SER35 LYS36 HIS37 SER38 GLU39 GLU40 LEU41 LYS42 ARG43 GLY44 MET45 THR46 ILE47 LYS48 LEU49 GLY50 TYR51 ALA52 GLU53 THR54 ASN55 ILE56 GLY57 VAL58 CYS59 GLU60 SER61 CYS62 LYS63 LYS64 PRO65 GLU66 ALA67 TYR68 VAL69 THR70 GLU71 PRO72 SER73 CYS74 LYS75 SER76 CYS77 GLY78 SER79 ASP80 ASP81 GLU82 PRO83 LYS84 PHE85 LEU86 ARG87 ARG88 ILE89 SER90 PHE91 ILE92 ASP93 ALA94 PRO95 GLY96 HIS97 GLU98 VAL99 LEU100 MET101 ALA102 THR103 MET104 LEU105 SER106 GLY107 ALA108 ALA109 LEU110 MET111 ASP112 GLY113 ALA114 ILE115 LEU116 VAL117 VAL118 ALA119 ALA120 ASN121 GLU122 PRO123 PHE124 PRO125 GLN126 PRO127 GLN128 THR129 ARG130 GLU131 HIS132 PHE133 VAL134 ALA135 LEU136 GLY137 ILE138 ILE139 GLY140 VAL141 LYS142 ASN143 LEU144 ILE145 ILE146 VAL147 GLN148 ASN149 LYS150 VAL151 ASP152 VAL153 VAL154 SER155 LYS156 GLU157 GLU158 ALA159 LEU160 SER161 GLN162 TYR163 ARG164 GLN165 ILE166 LYS167 GLN168 PHE169 THR170 LYS171 GLY172 THR173 TRP174 ALA175 GLU176 ASN177 VAL178 PRO179 ILE180 ILE181 PRO182 VAL183 SER184 ALA185 LEU186 HIS187 LYS188 ILE189 ASN190 ILE191 ASP192 SER193 LEU194 ILE195 GLU196 GLY197 ILE198 GLU199 GLU200 TYR201 ILE202 LYS203 THR204 PRO205 TYR206 ARG207 ASP208 LEU209 SER210 GLN211 LYS212 PRO213 VAL214 MET215 LEU216 VAL217 ILE218 ARG219 SER220 PHE221 ASP222 VAL223 ASN224 LYS225 PRO226 GLY227 THR228 GLN229 PHE230 ASN231 GLU232 LEU233 LYS234 GLY235 GLY236 VAL237 ILE238 GLY239 GLY240 SER241 ILE242 ILE243 GLN244 GLY245 LEU246 PHE247 LYS248 VAL249 ASP250 GLN251 GLU252 ILE253 LYS254 VAL255 LEU256 PRO257 GLY258 LEU259 ARG260 VAL261 VAL267 SER268 TYR269 GLU270 PRO271 ILE272 PHE273 THR274 LYS275 ILE276 SER277 SER278 ILE279 ARG280 PHE281 GLY282 ASP283 GLU284 GLU285 PHE286 LYS287 GLU288 ALA289 LYS290 PRO291 GLY292 GLY293 LEU294 VAL295 ALA296 ILE297 GLY298 THR299 TYR300 LEU301 ASP302 PRO303 SER304 LEU305 THR306 LYS307 ALA308 ASP309 ASN310 LEU311 LEU312 GLY313 SER314 ILE315 ILE316 THR317 LEU318 ALA319 ASP320 ALA321 GLU322 VAL323 PRO324 VAL325 LEU326 TRP327 ASN328 ILE329 ARG330 ILE331 LYS332 TYR333 ASN334 LEU335 LEU336 GLU337 ARG338 VAL339 VAL340 GLY341 ALA342 LYS343 GLU344 MET345 LEU346 LYS347 VAL348 ASP349 PRO350 ILE351 ARG352 ALA353 LYS354 GLU355 THR356 LEU357 MET358 LEU359 SER360 VAL361 GLY362 SER363 SER364 THR365 THR366 LEU367 GLY368 ILE369 VAL370 THR371 SER372 VAL373 LYS374 LYS375 ASP376 GLU377 ILE378 GLU379 VAL380 GLU381 LEU382 ARG383 ARG384 PRO385 VAL386 ALA387 VAL388 TRP389 SER390 ASN391 ASN392 ILE393 ARG394 THR395 VAL396 ILE397 SER398 ARG399 GLN400 ILE401 ALA402 GLY403 ARG404 TRP405 ARG406 MET407 ILE408 GLY409 TRP410 GLY411 LEU412 VAL413 GLU414 ILE415
Unit 2 MET1 ILE2 TYR3 SER4 ARG5 SER6 LYS7 LEU8 PRO9 SER10 GLU11 GLY12 GLU13 ILE14 LEU15 ILE16 ALA17 THR18 VAL19 LYS20 GLN21 VAL22 PHE23 ASP24 TYR25 GLY26 SER27 TYR28 VAL29 SER30 LEU31 ASP32 GLU33 TYR34 GLY35 GLY36 LEU37 GLN38 ALA39 PHE40 LEU41 PRO42 TRP43 SER44 GLU45 VAL46 SER47 ASN53 ILE54 ARG55 ASP56 VAL57 LEU58 LYS59 GLU60 ASN61 ARG62 LYS63 VAL64 ILE65 VAL66 LYS67 VAL68 ILE69 ARG70 VAL71 ASP72 ARG73 ARG74 LYS75 GLY76 THR77 VAL78 ASP79 VAL80 SER81 LEU82 LYS83 LYS84 VAL85 THR86 ASP87 ASP88 GLU89 ARG90 ARG91 LYS92 LYS93 ASN94 LEU95 GLN96 TRP97 LYS98 LYS99 ILE100 GLN101 ARG102 LEU103 ASP104 LYS105 ILE106 LEU107 GLU108 LEU109 VAL110 SER111 GLN112 LYS113 LEU114 LYS115 LEU116 SER117 GLU118 LYS119 ASP120 ALA121 TRP122 GLU123 GLN124 VAL125 ALA126 TRP127 LYS128 LEU129 GLU130 ALA131 LYS132 TYR133 GLY134 ASP135 PRO136 ILE137 THR138 ALA139 ILE140 GLU141 LYS142 ALA143 VAL144 LYS145 GLU146 GLY147 GLU148 LYS149 ILE150 LEU151 ILE152 ASP153 ALA154 GLY155 VAL156 PRO157 GLU158 ILE159 TRP160 VAL161 LYS162 PRO163 LEU164 LEU165 GLU166 GLU167 ALA168 SER169 ARG175 LYS176 VAL177 LYS178 MET179 SER180 GLY181 LEU182 ILE183 THR184 VAL185 ARG186 THR187 ASN188 GLU189 PRO190 LEU191 GLY192 VAL193 GLU194 LYS195 ILE196 LYS197 GLU198 VAL199 ILE200 SER201 LYS202 ALA203 LEU204 GLU205 ASN206 ILE207 GLU208 GLN209 ASP210 TYR211 GLU212 SER213 LEU214 LEU215 ASN216 ILE217 LYS218 ILE219 TYR220 THR221 ILE222 GLY223 ALA224 PRO225 ARG226 TYR227 ARG228 VAL229 ASP230 VAL231 VAL232 GLY233 THR234 ASN235 PRO236 LYS237 GLU238 ALA239 SER240 GLU241 ALA242 LEU243 ASN244 GLN245 ILE246 ILE247 SER248 ASN249 LEU250 ILE251 LYS252 ILE253 GLY254 LYS255 GLU256 GLU257 ASN258 VAL259 ASP260 ILE261 SER262 VAL263 VAL264
Unit 3 SER3 GLU4 LYS5 GLU6 TYR7 VAL8 GLU9 MET10 LEU11 ASP12 ARG13 LEU14 TYR15 SER16 LYS17 LEU18 PRO19
Unit 6 MET101
Nucleic acids
Unit 4 G2 C3 G4 G5 G6 G7 4SU8 G9 G10 A11 G12 C13 A14 G15 C16 C17 U17A G18 G19 H2U20 A21 G22 C23 U24 C25 G26 U27 C28 G29 G30 G31 OMC32 U33 C34 A35 U36 A37 A38 C39 C40 C41 G42 A43 A44 G45 A46 U47 C48 G49 U50 C51 G52 G53 5MU54 PSU55 C56 A57 A58 A59 U60 C61 C62 G63 G64 C65 C66 C67 C68 C69 G70 C71 A72 A73 C74 C75 A76
Ligands
Unit 5 MG501 GNP502
Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany