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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE T4 PHAGE SF1B HELICASE DDA
Keywords RECA-LIKE DOMAIN, SH3 DOMAIN, PIN-TOWER INTERFACE, COUPLING HYDROLYSIS TO DNA UNWINDING, SSDNA, HYDROLASE-DNA COMPLEX
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3UPU     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ATP-DEPENDENT DNA HELICASE DDA  A 439 3466 56
2  Protein   ATP-DEPENDENT DNA HELICASE DDA  B 439 3466 56
3  Protein   ATP-DEPENDENT DNA HELICASE DDA  C 439 3466 56
4  Other macromolecule   5'-D(*TP*TP*TP*TP*TP*TP*TP*T)-3'  D 8 157 0
5  Other macromolecule   5'-D(*TP*TP*TP*TP*TP*TP*TP*T)-3'  E 8 157 0
6  Other macromolecule   5'-D(*TP*TP*TP*TP*TP*TP*TP*T)-3'  F 8 157 0
7 Water     10 0 10
total       1351 10869 178
Proteins
Unit 1 MSE1 THR2 PHE3 ASP4 ASP5 LEU6 THR7 GLU8 GLY9 GLN10 LYS11 ASN12 ALA13 PHE14 ASN15 ILE16 VAL17 MSE18 LYS19 ALA20 ILE21 LYS22 GLU23 LYS24 LYS25 HIS26 HIS27 VAL28 THR29 ILE30 ASN31 GLY32 PRO33 ALA34 GLY35 THR36 GLY37 ALA38 THR39 THR40 LEU41 THR42 LYS43 PHE44 ILE45 ILE46 GLU47 ALA48 LEU49 ILE50 SER51 THR52 GLY53 GLU54 THR55 GLY56 ILE57 ILE58 LEU59 ALA60 ALA61 PRO62 THR63 HIS64 ALA65 ALA66 LYS67 LYS68 ILE69 LEU70 SER71 LYS72 LEU73 SER74 GLY75 LYS76 GLU77 ALA78 SER79 THR80 ILE81 HIS82 SER83 ILE84 LEU85 LYS86 ILE87 ASN88 PRO89 VAL90 THR91 TYR92 GLU93 GLU94 ASN95 VAL96 LEU97 PHE98 GLU99 GLN100 LYS101 GLU102 VAL103 PRO104 ASP105 LEU106 ALA107 LYS108 CYS109 ARG110 VAL111 LEU112 ILE113 CYS114 ASP115 GLU116 VAL117 SER118 MSE119 TYR120 ASP121 ARG122 LYS123 LEU124 PHE125 LYS126 ILE127 LEU128 LEU129 SER130 THR131 ILE132 PRO133 PRO134 TRP135 CYS136 THR137 ILE138 ILE139 GLY140 ILE141 GLY142 ASP143 ASN144 LYS145 GLN146 ILE147 ARG148 PRO149 VAL150 ASP151 PRO152 GLY153 GLU154 ASN155 THR156 ALA157 TYR158 ILE159 SER160 PRO161 PHE162 PHE163 THR164 HIS165 LYS166 ASP167 PHE168 TYR169 GLN170 CYS171 GLU172 LEU173 THR174 GLU175 VAL176 LYS177 ARG178 SER179 ASN180 ALA181 PRO182 ILE183 ILE184 ASP185 VAL186 ALA187 THR188 ASP189 VAL190 ARG191 ASN192 GLY193 LYS194 TRP195 ILE196 TYR197 ASP198 LYS199 VAL200 VAL201 ASP202 GLY203 HIS204 GLY205 VAL206 ARG207 GLY208 PHE209 THR210 GLY211 ASP212 THR213 ALA214 LEU215 ARG216 ASP217 PHE218 MSE219 VAL220 ASN221 TYR222 PHE223 SER224 ILE225 VAL226 LYS227 SER228 LEU229 ASP230 ASP231 LEU232 PHE233 GLU234 ASN235 ARG236 VAL237 MSE238 ALA239 PHE240 THR241 ASN242 LYS243 SER244 VAL245 ASP246 LYS247 LEU248 ASN249 SER250 ILE251 ILE252 ARG253 LYS254 LYS255 ILE256 PHE257 GLU258 THR259 ASP260 LYS261 ASP262 PHE263 ILE264 VAL265 GLY266 GLU267 ILE268 ILE269 VAL270 MSE271 GLN272 GLU273 PRO274 LEU275 PHE276 LYS277 THR278 TYR279 LYS280 ILE281 ASP282 GLY283 LYS284 PRO285 VAL286 SER287 GLU288 ILE289 ILE290 PHE291 ASN292 ASN293 GLY294 GLN295 LEU296 VAL297 ARG298 ILE299 ILE300 GLU301 ALA302 GLU303 TYR304 THR305 SER306 THR307 PHE308 VAL309 LYS310 ALA311 ARG312 GLY313 VAL314 PRO315 GLY316 GLU317 TYR318 LEU319 ILE320 ARG321 HIS322 TRP323 ASP324 LEU325 THR326 VAL327 GLU328 THR329 TYR330 GLY331 ASP332 ASP333 GLU334 TYR335 TYR336 ARG337 GLU338 LYS339 ILE340 LYS341 ILE342 ILE343 SER344 SER345 ASP346 GLU347 GLU348 LEU349 TYR350 LYS351 PHE352 ASN353 LEU354 PHE355 LEU356 GLY357 LYS358 THR359 ALA360 GLU361 THR362 TYR363 LYS364 ASN365 TRP366 ASN367 LYS368 GLY369 GLY370 LYS371 ALA372 PRO373 TRP374 SER375 ASP376 PHE377 TRP378 ASP379 ALA380 LYS381 SER382 GLN383 PHE384 SER385 LYS386 VAL387 LYS388 ALA389 LEU390 PRO391 ALA392 SER393 THR394 PHE395 HIS396 LYS397 ALA398 GLN399 GLY400 MSE401 SER402 VAL403 ASP404 ARG405 ALA406 PHE407 ILE408 TYR409 THR410 PRO411 CYS412 ILE413 HIS414 TYR415 ALA416 ASP417 VAL418 GLU419 LEU420 ALA421 GLN422 GLN423 LEU424 LEU425 TYR426 VAL427 GLY428 VAL429 THR430 ARG431 GLY432 ARG433 TYR434 ASP435 VAL436 PHE437 TYR438 VAL439
Unit 2 MSE1 THR2 PHE3 ASP4 ASP5 LEU6 THR7 GLU8 GLY9 GLN10 LYS11 ASN12 ALA13 PHE14 ASN15 ILE16 VAL17 MSE18 LYS19 ALA20 ILE21 LYS22 GLU23 LYS24 LYS25 HIS26 HIS27 VAL28 THR29 ILE30 ASN31 GLY32 PRO33 ALA34 GLY35 THR36 GLY37 ALA38 THR39 THR40 LEU41 THR42 LYS43 PHE44 ILE45 ILE46 GLU47 ALA48 LEU49 ILE50 SER51 THR52 GLY53 GLU54 THR55 GLY56 ILE57 ILE58 LEU59 ALA60 ALA61 PRO62 THR63 HIS64 ALA65 ALA66 LYS67 LYS68 ILE69 LEU70 SER71 LYS72 LEU73 SER74 GLY75 LYS76 GLU77 ALA78 SER79 THR80 ILE81 HIS82 SER83 ILE84 LEU85 LYS86 ILE87 ASN88 PRO89 VAL90 THR91 TYR92 GLU93 GLU94 ASN95 VAL96 LEU97 PHE98 GLU99 GLN100 LYS101 GLU102 VAL103 PRO104 ASP105 LEU106 ALA107 LYS108 CYS109 ARG110 VAL111 LEU112 ILE113 CYS114 ASP115 GLU116 VAL117 SER118 MSE119 TYR120 ASP121 ARG122 LYS123 LEU124 PHE125 LYS126 ILE127 LEU128 LEU129 SER130 THR131 ILE132 PRO133 PRO134 TRP135 CYS136 THR137 ILE138 ILE139 GLY140 ILE141 GLY142 ASP143 ASN144 LYS145 GLN146 ILE147 ARG148 PRO149 VAL150 ASP151 PRO152 GLY153 GLU154 ASN155 THR156 ALA157 TYR158 ILE159 SER160 PRO161 PHE162 PHE163 THR164 HIS165 LYS166 ASP167 PHE168 TYR169 GLN170 CYS171 GLU172 LEU173 THR174 GLU175 VAL176 LYS177 ARG178 SER179 ASN180 ALA181 PRO182 ILE183 ILE184 ASP185 VAL186 ALA187 THR188 ASP189 VAL190 ARG191 ASN192 GLY193 LYS194 TRP195 ILE196 TYR197 ASP198 LYS199 VAL200 VAL201 ASP202 GLY203 HIS204 GLY205 VAL206 ARG207 GLY208 PHE209 THR210 GLY211 ASP212 THR213 ALA214 LEU215 ARG216 ASP217 PHE218 MSE219 VAL220 ASN221 TYR222 PHE223 SER224 ILE225 VAL226 LYS227 SER228 LEU229 ASP230 ASP231 LEU232 PHE233 GLU234 ASN235 ARG236 VAL237 MSE238 ALA239 PHE240 THR241 ASN242 LYS243 SER244 VAL245 ASP246 LYS247 LEU248 ASN249 SER250 ILE251 ILE252 ARG253 LYS254 LYS255 ILE256 PHE257 GLU258 THR259 ASP260 LYS261 ASP262 PHE263 ILE264 VAL265 GLY266 GLU267 ILE268 ILE269 VAL270 MSE271 GLN272 GLU273 PRO274 LEU275 PHE276 LYS277 THR278 TYR279 LYS280 ILE281 ASP282 GLY283 LYS284 PRO285 VAL286 SER287 GLU288 ILE289 ILE290 PHE291 ASN292 ASN293 GLY294 GLN295 LEU296 VAL297 ARG298 ILE299 ILE300 GLU301 ALA302 GLU303 TYR304 THR305 SER306 THR307 PHE308 VAL309 LYS310 ALA311 ARG312 GLY313 VAL314 PRO315 GLY316 GLU317 TYR318 LEU319 ILE320 ARG321 HIS322 TRP323 ASP324 LEU325 THR326 VAL327 GLU328 THR329 TYR330 GLY331 ASP332 ASP333 GLU334 TYR335 TYR336 ARG337 GLU338 LYS339 ILE340 LYS341 ILE342 ILE343 SER344 SER345 ASP346 GLU347 GLU348 LEU349 TYR350 LYS351 PHE352 ASN353 LEU354 PHE355 LEU356 GLY357 LYS358 THR359 ALA360 GLU361 THR362 TYR363 LYS364 ASN365 TRP366 ASN367 LYS368 GLY369 GLY370 LYS371 ALA372 PRO373 TRP374 SER375 ASP376 PHE377 TRP378 ASP379 ALA380 LYS381 SER382 GLN383 PHE384 SER385 LYS386 VAL387 LYS388 ALA389 LEU390 PRO391 ALA392 SER393 THR394 PHE395 HIS396 LYS397 ALA398 GLN399 GLY400 MSE401 SER402 VAL403 ASP404 ARG405 ALA406 PHE407 ILE408 TYR409 THR410 PRO411 CYS412 ILE413 HIS414 TYR415 ALA416 ASP417 VAL418 GLU419 LEU420 ALA421 GLN422 GLN423 LEU424 LEU425 TYR426 VAL427 GLY428 VAL429 THR430 ARG431 GLY432 ARG433 TYR434 ASP435 VAL436 PHE437 TYR438 VAL439
Unit 3 MSE1 THR2 PHE3 ASP4 ASP5 LEU6 THR7 GLU8 GLY9 GLN10 LYS11 ASN12 ALA13 PHE14 ASN15 ILE16 VAL17 MSE18 LYS19 ALA20 ILE21 LYS22 GLU23 LYS24 LYS25 HIS26 HIS27 VAL28 THR29 ILE30 ASN31 GLY32 PRO33 ALA34 GLY35 THR36 GLY37 ALA38 THR39 THR40 LEU41 THR42 LYS43 PHE44 ILE45 ILE46 GLU47 ALA48 LEU49 ILE50 SER51 THR52 GLY53 GLU54 THR55 GLY56 ILE57 ILE58 LEU59 ALA60 ALA61 PRO62 THR63 HIS64 ALA65 ALA66 LYS67 LYS68 ILE69 LEU70 SER71 LYS72 LEU73 SER74 GLY75 LYS76 GLU77 ALA78 SER79 THR80 ILE81 HIS82 SER83 ILE84 LEU85 LYS86 ILE87 ASN88 PRO89 VAL90 THR91 TYR92 GLU93 GLU94 ASN95 VAL96 LEU97 PHE98 GLU99 GLN100 LYS101 GLU102 VAL103 PRO104 ASP105 LEU106 ALA107 LYS108 CYS109 ARG110 VAL111 LEU112 ILE113 CYS114 ASP115 GLU116 VAL117 SER118 MSE119 TYR120 ASP121 ARG122 LYS123 LEU124 PHE125 LYS126 ILE127 LEU128 LEU129 SER130 THR131 ILE132 PRO133 PRO134 TRP135 CYS136 THR137 ILE138 ILE139 GLY140 ILE141 GLY142 ASP143 ASN144 LYS145 GLN146 ILE147 ARG148 PRO149 VAL150 ASP151 PRO152 GLY153 GLU154 ASN155 THR156 ALA157 TYR158 ILE159 SER160 PRO161 PHE162 PHE163 THR164 HIS165 LYS166 ASP167 PHE168 TYR169 GLN170 CYS171 GLU172 LEU173 THR174 GLU175 VAL176 LYS177 ARG178 SER179 ASN180 ALA181 PRO182 ILE183 ILE184 ASP185 VAL186 ALA187 THR188 ASP189 VAL190 ARG191 ASN192 GLY193 LYS194 TRP195 ILE196 TYR197 ASP198 LYS199 VAL200 VAL201 ASP202 GLY203 HIS204 GLY205 VAL206 ARG207 GLY208 PHE209 THR210 GLY211 ASP212 THR213 ALA214 LEU215 ARG216 ASP217 PHE218 MSE219 VAL220 ASN221 TYR222 PHE223 SER224 ILE225 VAL226 LYS227 SER228 LEU229 ASP230 ASP231 LEU232 PHE233 GLU234 ASN235 ARG236 VAL237 MSE238 ALA239 PHE240 THR241 ASN242 LYS243 SER244 VAL245 ASP246 LYS247 LEU248 ASN249 SER250 ILE251 ILE252 ARG253 LYS254 LYS255 ILE256 PHE257 GLU258 THR259 ASP260 LYS261 ASP262 PHE263 ILE264 VAL265 GLY266 GLU267 ILE268 ILE269 VAL270 MSE271 GLN272 GLU273 PRO274 LEU275 PHE276 LYS277 THR278 TYR279 LYS280 ILE281 ASP282 GLY283 LYS284 PRO285 VAL286 SER287 GLU288 ILE289 ILE290 PHE291 ASN292 ASN293 GLY294 GLN295 LEU296 VAL297 ARG298 ILE299 ILE300 GLU301 ALA302 GLU303 TYR304 THR305 SER306 THR307 PHE308 VAL309 LYS310 ALA311 ARG312 GLY313 VAL314 PRO315 GLY316 GLU317 TYR318 LEU319 ILE320 ARG321 HIS322 TRP323 ASP324 LEU325 THR326 VAL327 GLU328 THR329 TYR330 GLY331 ASP332 ASP333 GLU334 TYR335 TYR336 ARG337 GLU338 LYS339 ILE340 LYS341 ILE342 ILE343 SER344 SER345 ASP346 GLU347 GLU348 LEU349 TYR350 LYS351 PHE352 ASN353 LEU354 PHE355 LEU356 GLY357 LYS358 THR359 ALA360 GLU361 THR362 TYR363 LYS364 ASN365 TRP366 ASN367 LYS368 GLY369 GLY370 LYS371 ALA372 PRO373 TRP374 SER375 ASP376 PHE377 TRP378 ASP379 ALA380 LYS381 SER382 GLN383 PHE384 SER385 LYS386 VAL387 LYS388 ALA389 LEU390 PRO391 ALA392 SER393 THR394 PHE395 HIS396 LYS397 ALA398 GLN399 GLY400 MSE401 SER402 VAL403 ASP404 ARG405 ALA406 PHE407 ILE408 TYR409 THR410 PRO411 CYS412 ILE413 HIS414 TYR415 ALA416 ASP417 VAL418 GLU419 LEU420 ALA421 GLN422 GLN423 LEU424 LEU425 TYR426 VAL427 GLY428 VAL429 THR430 ARG431 GLY432 ARG433 TYR434 ASP435 VAL436 PHE437 TYR438 VAL439
Other macromolecules
Unit 4 DT600 DT601 DT602 DT603 DT604 DT605 DT606 DT607
Unit 5 DT600 DT601 DT602 DT603 DT604 DT605 DT606 DT607
Unit 6 DT600 DT601 DT602 DT603 DT604 DT605 DT606 DT607
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany