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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE MOUSE CD1D-C20:2-AGALCER-L363 MAB F
Keywords IMMUNOLOGY, MOUSE CD1D/NKT, MAB, IMMUNE SYSTEM
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3UBX     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ANTIGEN-PRESENTING GLYCOPROTEIN CD1D1  A 275 2223 0
2  Protein   BETA-2-MICROGLOBULIN  B 99 813 0
3  Protein   ANTIGEN-PRESENTING GLYCOPROTEIN CD1D1  D 276 2230 0
4  Protein   BETA-2-MICROGLOBULIN  E 98 805 0
5  Protein   L363 LIGHT CHAIN (IGKV13-84*01)  L 214 1653 0
6  Protein   L363 HEAVY CHAIN (IGHV9-4*02)  H 221 1660 0
7  Protein   L363 LIGHT CHAIN (IGKV13-84*01)  I 214 1655 0
8  Protein   L363 HEAVY CHAIN (IGHV9-4*02)  G 221 1657 0
9  Ligand    C 2 0 28
10  Ligand    F 2 0 28
11  Ligand   ANTIGEN-PRESENTING GLYCOPROTEIN CD1D1  A 2 0 68
12  Ligand   ANTIGEN-PRESENTING GLYCOPROTEIN CD1D1  D 2 0 68
total       1626 12696 192
Proteins
Unit 1 LYS6 ASN7 TYR8 THR9 PHE10 ARG11 CYS12 LEU13 GLN14 MET15 SER16 SER17 PHE18 ALA19 ASN20 ARG21 SER22 TRP23 SER24 ARG25 THR26 ASP27 SER28 VAL29 VAL30 TRP31 LEU32 GLY33 ASP34 LEU35 GLN36 THR37 HIS38 ARG39 TRP40 SER41 ASN42 ASP43 SER44 ALA45 THR46 ILE47 SER48 PHE49 THR50 LYS51 PRO52 TRP53 SER54 GLN55 GLY56 LYS57 LEU58 SER59 ASN60 GLN61 GLN62 TRP63 GLU64 LYS65 LEU66 GLN67 HIS68 MET69 PHE70 GLN71 VAL72 TYR73 ARG74 VAL75 SER76 PHE77 THR78 ARG79 ASP80 ILE81 GLN82 GLU83 LEU84 VAL85 LYS86 MET87 MET88 SER89 PRO90 LYS91 GLU92 ASP93 TYR94 PRO95 ILE96 GLU97 ILE98 GLN99 LEU100 SER101 ALA102 GLY103 CYS104 GLU105 MET106 TYR107 PRO108 GLY109 ASN110 ALA111 SER112 GLU113 SER114 PHE115 LEU116 HIS117 VAL118 ALA119 PHE120 GLN121 GLY122 LYS123 TYR124 VAL125 VAL126 ARG127 PHE128 TRP129 GLY130 THR131 SER132 TRP133 GLN134 THR135 VAL136 PRO137 GLY138 ALA139 PRO140 SER141 TRP142 LEU143 ASP144 LEU145 PRO146 ILE147 LYS148 VAL149 LEU150 ASN151 ALA152 ASP153 GLN154 GLY155 THR156 SER157 ALA158 THR159 VAL160 GLN161 MET162 LEU163 LEU164 ASN165 ASP166 THR167 CYS168 PRO169 LEU170 PHE171 VAL172 ARG173 GLY174 LEU175 LEU176 GLU177 ALA178 GLY179 LYS180 SER181 ASP182 LEU183 GLU184 LYS185 GLN186 GLU187 LYS188 PRO189 VAL190 ALA191 TRP192 LEU193 SER194 SER195 GLY202 HIS203 ARG204 GLN205 LEU206 VAL207 CYS208 HIS209 VAL210 SER211 GLY212 PHE213 TYR214 PRO215 LYS216 PRO217 VAL218 TRP219 VAL220 MET221 TRP222 MET223 ARG224 GLY225 ASP226 GLN227 GLU228 GLN229 GLN230 GLY231 THR232 HIS233 ARG234 GLY235 ASP236 PHE237 LEU238 PRO239 ASN240 ALA241 ASP242 GLU243 THR244 TRP245 TYR246 LEU247 GLN248 ALA249 THR250 LEU251 ASP252 VAL253 GLU254 ALA255 GLY256 GLU257 GLU258 ALA259 GLY260 LEU261 ALA262 CYS263 ARG264 VAL265 LYS266 HIS267 SER268 SER269 LEU270 GLY271 GLY272 GLN273 ASP274 ILE275 ILE276 LEU277 TYR278 TRP279 HIS280 HIS281 HIS282 HIS283 HIS284 HIS285 HIS286
Unit 2 ILE1 GLN2 LYS3 THR4 PRO5 GLN6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 PRO15 GLU16 ASN17 GLY18 LYS19 PRO20 ASN21 ILE22 LEU23 ASN24 CYS25 TYR26 VAL27 THR28 GLN29 PHE30 HIS31 PRO32 PRO33 HIS34 ILE35 GLU36 ILE37 GLN38 MET39 LEU40 LYS41 ASN42 GLY43 LYS44 LYS45 ILE46 PRO47 LYS48 VAL49 GLU50 MET51 SER52 ASP53 MET54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 ILE64 LEU65 ALA66 HIS67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 THR75 ASP76 THR77 TYR78 ALA79 CYS80 ARG81 VAL82 LYS83 HIS84 ALA85 SER86 MET87 ALA88 GLU89 PRO90 LYS91 THR92 VAL93 TYR94 TRP95 ASP96 ARG97 ASP98 MET99
Unit 3 LYS6 ASN7 TYR8 THR9 PHE10 ARG11 CYS12 LEU13 GLN14 MET15 SER16 SER17 PHE18 ALA19 ASN20 ARG21 SER22 TRP23 SER24 ARG25 THR26 ASP27 SER28 VAL29 VAL30 TRP31 LEU32 GLY33 ASP34 LEU35 GLN36 THR37 HIS38 ARG39 TRP40 SER41 ASN42 ASP43 SER44 ALA45 THR46 ILE47 SER48 PHE49 THR50 LYS51 PRO52 TRP53 SER54 GLN55 GLY56 LYS57 LEU58 SER59 ASN60 GLN61 GLN62 TRP63 GLU64 LYS65 LEU66 GLN67 HIS68 MET69 PHE70 GLN71 VAL72 TYR73 ARG74 VAL75 SER76 PHE77 THR78 ARG79 ASP80 ILE81 GLN82 GLU83 LEU84 VAL85 LYS86 MET87 MET88 SER89 PRO90 LYS91 GLU92 ASP93 TYR94 PRO95 ILE96 GLU97 ILE98 GLN99 LEU100 SER101 ALA102 GLY103 CYS104 GLU105 MET106 TYR107 PRO108 GLY109 ASN110 ALA111 SER112 GLU113 SER114 PHE115 LEU116 HIS117 VAL118 ALA119 PHE120 GLN121 GLY122 LYS123 TYR124 VAL125 VAL126 ARG127 PHE128 TRP129 GLY130 THR131 SER132 TRP133 GLN134 THR135 VAL136 PRO137 GLY138 ALA139 PRO140 SER141 TRP142 LEU143 ASP144 LEU145 PRO146 ILE147 LYS148 VAL149 LEU150 ASN151 ALA152 ASP153 GLN154 GLY155 THR156 SER157 ALA158 THR159 VAL160 GLN161 MET162 LEU163 LEU164 ASN165 ASP166 THR167 CYS168 PRO169 LEU170 PHE171 VAL172 ARG173 GLY174 LEU175 LEU176 GLU177 ALA178 GLY179 LYS180 SER181 ASP182 LEU183 GLU184 LYS185 GLN186 GLU187 LYS188 PRO189 VAL190 ALA191 TRP192 LEU193 SER194 SER195 VAL196 GLY202 HIS203 ARG204 GLN205 LEU206 VAL207 CYS208 HIS209 VAL210 SER211 GLY212 PHE213 TYR214 PRO215 LYS216 PRO217 VAL218 TRP219 VAL220 MET221 TRP222 MET223 ARG224 GLY225 ASP226 GLN227 GLU228 GLN229 GLN230 GLY231 THR232 HIS233 ARG234 GLY235 ASP236 PHE237 LEU238 PRO239 ASN240 ALA241 ASP242 GLU243 THR244 TRP245 TYR246 LEU247 GLN248 ALA249 THR250 LEU251 ASP252 VAL253 GLU254 ALA255 GLY256 GLU257 GLU258 ALA259 GLY260 LEU261 ALA262 CYS263 ARG264 VAL265 LYS266 HIS267 SER268 SER269 LEU270 GLY271 GLY272 GLN273 ASP274 ILE275 ILE276 LEU277 TYR278 TRP279 HIS280 HIS281 HIS282 HIS283 HIS284 HIS285 HIS286
Unit 4 GLN2 LYS3 THR4 PRO5 GLN6 ILE7 GLN8 VAL9 TYR10 SER11 ARG12 HIS13 PRO14 PRO15 GLU16 ASN17 GLY18 LYS19 PRO20 ASN21 ILE22 LEU23 ASN24 CYS25 TYR26 VAL27 THR28 GLN29 PHE30 HIS31 PRO32 PRO33 HIS34 ILE35 GLU36 ILE37 GLN38 MET39 LEU40 LYS41 ASN42 GLY43 LYS44 LYS45 ILE46 PRO47 LYS48 VAL49 GLU50 MET51 SER52 ASP53 MET54 SER55 PHE56 SER57 LYS58 ASP59 TRP60 SER61 PHE62 TYR63 ILE64 LEU65 ALA66 HIS67 THR68 GLU69 PHE70 THR71 PRO72 THR73 GLU74 THR75 ASP76 THR77 TYR78 ALA79 CYS80 ARG81 VAL82 LYS83 HIS84 ALA85 SER86 MET87 ALA88 GLU89 PRO90 LYS91 THR92 VAL93 TYR94 TRP95 ASP96 ARG97 ASP98 MET99
Unit 5 ASP1 ILE2 GLN3 MET4 THR5 GLN6 SER7 SER8 SER9 SER10 PHE11 SER12 VAL13 SER14 LEU15 GLY16 ASP17 ARG18 ALA19 THR20 ILE21 THR22 CYS23 LYS24 ALA25 SER26 GLU27 ASP28 ILE29 TYR30 ASN31 ARG32 ILE33 ALA34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 ASN42 VAL43 PRO44 ARG45 LEU46 LEU47 ILE48 SER49 GLY50 ALA51 THR52 SER53 LEU54 GLU55 THR56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 LYS69 ASP70 TYR71 THR72 LEU73 SER74 ILE75 THR76 SER77 LEU78 GLN79 THR80 GLU81 ASP82 VAL83 ALA84 THR85 TYR86 TYR87 CYS88 GLN89 HIS90 TYR91 TRP92 SER93 SER94 PRO95 LEU96 THR97 PHE98 GLY99 ALA100 GLY101 THR102 LYS103 LEU104 GLU105 LEU106 LYS107 ARG108 ALA109 ASP110 ALA111 ALA112 PRO113 THR114 VAL115 SER116 ILE117 PHE118 PRO119 PRO120 SER121 SER122 GLU123 GLN124 LEU125 THR126 SER127 GLY128 GLY129 ALA130 SER131 VAL132 VAL133 CYS134 PHE135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 LYS142 ASP143 ILE144 ASN145 VAL146 LYS147 TRP148 LYS149 ILE150 ASP151 GLY152 SER153 GLU154 ARG155 GLN156 ASN157 GLY158 VAL159 LEU160 ASN161 SER162 TRP163 THR164 ASP165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 MET175 SER176 SER177 THR178 LEU179 THR180 LEU181 THR182 LYS183 ASP184 GLU185 TYR186 GLU187 ARG188 HIS189 ASN190 SER191 TYR192 THR193 CYS194 GLU195 ALA196 THR197 HIS198 LYS199 THR200 SER201 THR202 SER203 PRO204 ILE205 VAL206 LYS207 SER208 PHE209 ASN210 ARG211 ASN212 GLU213 CYS214
Unit 6 GLN1 ILE2 GLN3 LEU4 VAL5 GLN6 SER7 GLY8 PRO9 GLU10 LEU11 LYS12 LYS13 PRO14 GLY15 GLU16 THR17 VAL18 ARG19 ILE20 SER21 CYS22 LYS23 ALA24 SER25 GLY26 TYR27 SER28 PHE29 THR30 ASN31 TYR32 GLY33 MET34 HIS35 TRP36 VAL37 LYS38 GLN39 ALA40 PRO41 GLY42 LYS43 GLY44 LEU45 LYS46 TRP47 VAL48 GLY49 TRP50 ILE51 ASN52 THR53 TYR54 THR55 GLY56 GLU57 PRO58 THR59 TYR60 ALA61 ASP62 ASP63 PHE64 LYS65 GLY66 ARG67 PHE68 ALA69 PHE70 SER71 LEU72 GLU73 THR74 SER75 ALA76 SER77 THR78 ALA79 TYR80 LEU81 GLU82 ILE83 ASN84 ASN85 LEU86 LYS87 ASN88 GLU89 ASP90 MET91 ALA92 THR93 TYR94 LEU95 CYS96 ALA97 SER98 ALA99 ALA100 GLY101 ILE102 ARG103 TRP104 ALA105 TRP106 PHE107 ALA108 TRP109 TRP110 GLY111 GLN112 GLY113 THR114 LEU115 VAL116 THR117 VAL118 SER119 ALA120 ALA121 LYS122 THR123 THR124 ALA125 PRO126 SER127 VAL128 TYR129 PRO130 LEU131 ALA132 PRO133 VAL134 CYS135 GLY136 THR138 THR139 GLY140 SER141 SER142 VAL143 THR144 LEU145 GLY146 CYS147 LEU148 VAL149 LYS150 GLY151 TYR152 PHE153 PRO154 GLU155 PRO156 VAL157 THR158 LEU159 THR160 TRP161 ASN162 SER163 GLY164 SER165 LEU166 SER167 SER168 GLY169 VAL170 HIS171 THR172 PHE173 PRO174 ALA175 VAL176 LEU177 GLN178 SER179 ASP180 LEU181 TYR182 THR183 LEU184 SER185 SER186 SER187 VAL188 THR189 VAL190 THR191 SER192 SER193 THR194 TRP195 PRO196 SER197 GLN198 SER199 ILE200 THR201 CYS202 ASN203 VAL204 ALA205 HIS206 PRO207 ALA208 SER209 SER210 THR211 LYS212 VAL213 ASP214 LYS215 LYS216 ILE217 GLU218 PRO219 ARG220 GLY221 PRO222
Unit 7 ASP1 ILE2 GLN3 MET4 THR5 GLN6 SER7 SER8 SER9 SER10 PHE11 SER12 VAL13 SER14 LEU15 GLY16 ASP17 ARG18 ALA19 THR20 ILE21 THR22 CYS23 LYS24 ALA25 SER26 GLU27 ASP28 ILE29 TYR30 ASN31 ARG32 ILE33 ALA34 TRP35 TYR36 GLN37 GLN38 LYS39 PRO40 GLY41 ASN42 VAL43 PRO44 ARG45 LEU46 LEU47 ILE48 SER49 GLY50 ALA51 THR52 SER53 LEU54 GLU55 THR56 GLY57 VAL58 PRO59 SER60 ARG61 PHE62 SER63 GLY64 SER65 GLY66 SER67 GLY68 LYS69 ASP70 TYR71 THR72 LEU73 SER74 ILE75 THR76 SER77 LEU78 GLN79 THR80 GLU81 ASP82 VAL83 ALA84 THR85 TYR86 TYR87 CYS88 GLN89 HIS90 TYR91 TRP92 SER93 SER94 PRO95 LEU96 THR97 PHE98 GLY99 ALA100 GLY101 THR102 LYS103 LEU104 GLU105 LEU106 LYS107 ARG108 ALA109 ASP110 ALA111 ALA112 PRO113 THR114 VAL115 SER116 ILE117 PHE118 PRO119 PRO120 SER121 SER122 GLU123 GLN124 LEU125 THR126 SER127 GLY128 GLY129 ALA130 SER131 VAL132 VAL133 CYS134 PHE135 LEU136 ASN137 ASN138 PHE139 TYR140 PRO141 LYS142 ASP143 ILE144 ASN145 VAL146 LYS147 TRP148 LYS149 ILE150 ASP151 GLY152 SER153 GLU154 ARG155 GLN156 ASN157 GLY158 VAL159 LEU160 ASN161 SER162 TRP163 THR164 ASP165 GLN166 ASP167 SER168 LYS169 ASP170 SER171 THR172 TYR173 SER174 MET175 SER176 SER177 THR178 LEU179 THR180 LEU181 THR182 LYS183 ASP184 GLU185 TYR186 GLU187 ARG188 HIS189 ASN190 SER191 TYR192 THR193 CYS194 GLU195 ALA196 THR197 HIS198 LYS199 THR200 SER201 THR202 SER203 PRO204 ILE205 VAL206 LYS207 SER208 PHE209 ASN210 ARG211 ASN212 GLU213 CYS214
Unit 8 GLN1 ILE2 GLN3 LEU4 VAL5 GLN6 SER7 GLY8 PRO9 GLU10 LEU11 LYS12 LYS13 PRO14 GLY15 GLU16 THR17 VAL18 ARG19 ILE20 SER21 CYS22 LYS23 ALA24 SER25 GLY26 TYR27 SER28 PHE29 THR30 ASN31 TYR32 GLY33 MET34 HIS35 TRP36 VAL37 LYS38 GLN39 ALA40 PRO41 GLY42 LYS43 GLY44 LEU45 LYS46 TRP47 VAL48 GLY49 TRP50 ILE51 ASN52 THR53 TYR54 THR55 GLY56 GLU57 PRO58 THR59 TYR60 ALA61 ASP62 ASP63 PHE64 LYS65 GLY66 ARG67 PHE68 ALA69 PHE70 SER71 LEU72 GLU73 THR74 SER75 ALA76 SER77 THR78 ALA79 TYR80 LEU81 GLU82 ILE83 ASN84 ASN85 LEU86 LYS87 ASN88 GLU89 ASP90 MET91 ALA92 THR93 TYR94 LEU95 CYS96 ALA97 SER98 ALA99 ALA100 GLY101 ILE102 ARG103 TRP104 ALA105 TRP106 PHE107 ALA108 TRP109 TRP110 GLY111 GLN112 GLY113 THR114 LEU115 VAL116 THR117 VAL118 SER119 ALA120 ALA121 LYS122 THR123 THR124 ALA125 PRO126 SER127 VAL128 TYR129 PRO130 LEU131 ALA132 PRO133 VAL134 CYS135 GLY136 THR138 THR139 GLY140 SER141 SER142 VAL143 THR144 LEU145 GLY146 CYS147 LEU148 VAL149 LYS150 GLY151 TYR152 PHE153 PRO154 GLU155 PRO156 VAL157 THR158 LEU159 THR160 TRP161 ASN162 SER163 GLY164 SER165 LEU166 SER167 SER168 GLY169 VAL170 HIS171 THR172 PHE173 PRO174 ALA175 VAL176 LEU177 GLN178 SER179 ASP180 LEU181 TYR182 THR183 LEU184 SER185 SER186 SER187 VAL188 THR189 VAL190 THR191 SER192 SER193 THR194 TRP195 PRO196 SER197 GLN198 SER199 ILE200 THR201 CYS202 ASN203 VAL204 ALA205 HIS206 PRO207 ALA208 SER209 SER210 THR211 LYS212 VAL213 ASP214 LYS215 LYS216 ILE217 GLU218 PRO219 ARG220 GLY221 PRO222
Ligands
Unit 9 NAG1 NAG2
Unit 10 NAG1 NAG2
Unit 11 09N287 NAG512
Unit 12 09N287 NAG512
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany