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Sequence, Chains, Asymmetric and Biological Units

Title A NEW CRYSTAL STRUCTURE OF A FUSARIUM OXYSPORUM GH10 XYLANAS THE PRESENCE OF AN EXTENDED LOOP ON TOP OF THE CATALYTIC CL
Keywords TIM BARREL, XYLANASE, HYDROLASE
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3U7B     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   ENDO-1,4-BETA-XYLANASE  A 327 2547 0
2  Protein   ENDO-1,4-BETA-XYLANASE  B 326 2536 0
3  Protein   ENDO-1,4-BETA-XYLANASE  C 326 2536 0
4  Protein   ENDO-1,4-BETA-XYLANASE  D 327 2547 0
5  Protein   ENDO-1,4-BETA-XYLANASE  E 326 2536 0
6  Ligand    F 3 0 39
7  Ligand    G 5 0 61
8  Ligand    H 3 0 39
9  Ligand    I 4 0 50
10  Ligand    J 4 0 50
11  Ligand   ENDO-1,4-BETA-XYLANASE  A 7 0 28
12  Ligand   ENDO-1,4-BETA-XYLANASE  B 7 0 28
13  Ligand   ENDO-1,4-BETA-XYLANASE  C 6 0 24
14  Ligand   ENDO-1,4-BETA-XYLANASE  D 3 0 12
15  Ligand   ENDO-1,4-BETA-XYLANASE  E 3 0 12
16 Water     1901 0 1901
total       3578 12702 2244
Proteins
Unit 1 ALA1 ALA2 SER3 GLY4 LEU5 GLU6 ALA7 ALA8 MET9 LYS10 ALA11 ALA12 GLY13 LYS14 GLN15 TYR16 PHE17 GLY18 THR19 ALA20 LEU21 THR22 VAL23 ARG24 ASN25 ASP26 GLN27 GLY28 GLU29 ILE30 ASP31 ILE32 ILE33 ASN34 ASN35 LYS36 ASN37 GLU38 ILE39 GLY40 SER41 ILE42 THR43 PRO44 GLU45 ASN46 ALA47 MET48 LYS49 TRP50 GLU51 ALA52 ILE53 GLN54 PRO55 ASN56 ARG57 GLY58 GLN59 PHE60 ASN61 TRP62 GLY63 PRO64 ALA65 ASP66 GLN67 HIS68 ALA69 ALA70 ALA71 ALA72 THR73 SER74 ARG75 GLY76 TYR77 GLU78 LEU79 ARG80 CYS81 HIS82 THR83 LEU84 VAL85 TRP86 HIS87 SER88 GLN89 LEU90 PRO91 SER92 TRP93 VAL94 ALA95 ASN96 GLY97 ASN98 TRP99 ASN100 ASN101 GLN102 THR103 LEU104 GLN105 ALA106 VAL107 MET108 ARG109 ASP110 HIS111 ILE112 ASN113 ALA114 VAL115 MET116 GLY117 ARG118 TYR119 ARG120 GLY121 LYS122 CYS123 THR124 HIS125 TRP126 ASP127 VAL128 VAL129 ASN130 GLU131 ALA132 LEU133 ASN134 GLU135 ASP136 GLY137 THR138 TYR139 ARG140 ASP141 SER142 VAL143 PHE144 LEU145 ARG146 VAL147 ILE148 GLY149 GLU150 ALA151 TYR152 ILE153 PRO154 ILE155 ALA156 PHE157 ARG158 MET159 ALA160 LEU161 ALA162 ALA163 ASP164 PRO165 THR166 THR167 LYS168 LEU169 TYR170 TYR171 ASN172 ASP173 TYR174 ASN175 LEU176 GLU177 TYR178 GLY179 ASN180 ALA181 LYS182 THR183 GLU184 GLY185 ALA186 LYS187 ARG188 ILE189 ALA190 ARG191 LEU192 VAL193 LYS194 SER195 TYR196 GLY197 LEU198 ARG199 ILE200 ASP201 GLY202 ILE203 GLY204 LEU205 GLN206 ALA207 HIS208 MET209 THR210 SER211 GLU212 SER213 THR214 PRO215 THR216 GLN217 ASN218 THR219 PRO220 THR221 PRO222 SER223 ARG224 ALA225 LYS226 LEU227 ALA228 SER229 VAL230 LEU231 GLN232 GLY233 LEU234 ALA235 ASP236 LEU237 GLY238 VAL239 ASP240 VAL241 ALA242 TYR243 THR244 GLU245 LEU246 ASP247 ILE248 ARG249 MET250 ASN251 THR252 PRO253 ALA254 THR255 GLN256 GLN257 LYS258 LEU259 GLN260 THR261 ASN262 ALA263 ASP264 ALA265 TYR266 ALA267 ARG268 ILE269 VAL270 GLY271 SER272 CYS273 MET274 ASP275 VAL276 LYS277 ARG278 CYS279 VAL280 GLY281 ILE282 THR283 VAL284 TRP285 GLY286 ILE287 SER288 ASP289 LYS290 TYR291 SER292 TRP293 VAL294 PRO295 GLY296 THR297 PHE298 PRO299 GLY300 GLU301 GLY302 SER303 ALA304 LEU305 LEU306 TRP307 ASN308 ASP309 ASN310 PHE311 GLN312 LYS313 LYS314 PRO315 SER316 TYR317 THR318 SER319 THR320 LEU321 ASN322 THR323 ILE324 ASN325 ARG326 ARG327
Unit 2 ALA1 ALA2 SER3 GLY4 LEU5 GLU6 ALA7 ALA8 MET9 LYS10 ALA11 ALA12 GLY13 LYS14 GLN15 TYR16 PHE17 GLY18 THR19 ALA20 LEU21 THR22 VAL23 ARG24 ASN25 ASP26 GLN27 GLY28 GLU29 ILE30 ASP31 ILE32 ILE33 ASN34 ASN35 LYS36 ASN37 GLU38 ILE39 GLY40 SER41 ILE42 THR43 PRO44 GLU45 ASN46 ALA47 MET48 LYS49 TRP50 GLU51 ALA52 ILE53 GLN54 PRO55 ASN56 ARG57 GLY58 GLN59 PHE60 ASN61 TRP62 GLY63 PRO64 ALA65 ASP66 GLN67 HIS68 ALA69 ALA70 ALA71 ALA72 THR73 SER74 ARG75 GLY76 TYR77 GLU78 LEU79 ARG80 CYS81 HIS82 THR83 LEU84 VAL85 TRP86 HIS87 SER88 GLN89 LEU90 PRO91 SER92 TRP93 VAL94 ALA95 ASN96 GLY97 ASN98 TRP99 ASN100 ASN101 GLN102 THR103 LEU104 GLN105 ALA106 VAL107 MET108 ARG109 ASP110 HIS111 ILE112 ASN113 ALA114 VAL115 MET116 GLY117 ARG118 TYR119 ARG120 GLY121 LYS122 CYS123 THR124 HIS125 TRP126 ASP127 VAL128 VAL129 ASN130 GLU131 ALA132 LEU133 ASN134 GLU135 ASP136 GLY137 THR138 TYR139 ARG140 ASP141 SER142 VAL143 PHE144 LEU145 ARG146 VAL147 ILE148 GLY149 GLU150 ALA151 TYR152 ILE153 PRO154 ILE155 ALA156 PHE157 ARG158 MET159 ALA160 LEU161 ALA162 ALA163 ASP164 PRO165 THR166 THR167 LYS168 LEU169 TYR170 TYR171 ASN172 ASP173 TYR174 ASN175 LEU176 GLU177 TYR178 GLY179 ASN180 ALA181 LYS182 THR183 GLU184 GLY185 ALA186 LYS187 ARG188 ILE189 ALA190 ARG191 LEU192 VAL193 LYS194 SER195 TYR196 GLY197 LEU198 ARG199 ILE200 ASP201 GLY202 ILE203 GLY204 LEU205 GLN206 ALA207 HIS208 MET209 THR210 SER211 GLU212 SER213 THR214 PRO215 THR216 GLN217 ASN218 THR219 PRO220 THR221 PRO222 SER223 ARG224 ALA225 LYS226 LEU227 ALA228 SER229 VAL230 LEU231 GLN232 GLY233 LEU234 ALA235 ASP236 LEU237 GLY238 VAL239 ASP240 VAL241 ALA242 TYR243 THR244 GLU245 LEU246 ASP247 ILE248 ARG249 MET250 ASN251 THR252 PRO253 ALA254 THR255 GLN256 GLN257 LYS258 LEU259 GLN260 THR261 ASN262 ALA263 ASP264 ALA265 TYR266 ALA267 ARG268 ILE269 VAL270 GLY271 SER272 CYS273 MET274 ASP275 VAL276 LYS277 ARG278 CYS279 VAL280 GLY281 ILE282 THR283 VAL284 TRP285 GLY286 ILE287 SER288 ASP289 LYS290 TYR291 SER292 TRP293 VAL294 PRO295 GLY296 THR297 PHE298 PRO299 GLY300 GLU301 GLY302 SER303 ALA304 LEU305 LEU306 TRP307 ASN308 ASP309 ASN310 PHE311 GLN312 LYS313 LYS314 PRO315 SER316 TYR317 THR318 SER319 THR320 LEU321 ASN322 THR323 ILE324 ASN325 ARG326
Unit 3 ALA1 ALA2 SER3 GLY4 LEU5 GLU6 ALA7 ALA8 MET9 LYS10 ALA11 ALA12 GLY13 LYS14 GLN15 TYR16 PHE17 GLY18 THR19 ALA20 LEU21 THR22 VAL23 ARG24 ASN25 ASP26 GLN27 GLY28 GLU29 ILE30 ASP31 ILE32 ILE33 ASN34 ASN35 LYS36 ASN37 GLU38 ILE39 GLY40 SER41 ILE42 THR43 PRO44 GLU45 ASN46 ALA47 MET48 LYS49 TRP50 GLU51 ALA52 ILE53 GLN54 PRO55 ASN56 ARG57 GLY58 GLN59 PHE60 ASN61 TRP62 GLY63 PRO64 ALA65 ASP66 GLN67 HIS68 ALA69 ALA70 ALA71 ALA72 THR73 SER74 ARG75 GLY76 TYR77 GLU78 LEU79 ARG80 CYS81 HIS82 THR83 LEU84 VAL85 TRP86 HIS87 SER88 GLN89 LEU90 PRO91 SER92 TRP93 VAL94 ALA95 ASN96 GLY97 ASN98 TRP99 ASN100 ASN101 GLN102 THR103 LEU104 GLN105 ALA106 VAL107 MET108 ARG109 ASP110 HIS111 ILE112 ASN113 ALA114 VAL115 MET116 GLY117 ARG118 TYR119 ARG120 GLY121 LYS122 CYS123 THR124 HIS125 TRP126 ASP127 VAL128 VAL129 ASN130 GLU131 ALA132 LEU133 ASN134 GLU135 ASP136 GLY137 THR138 TYR139 ARG140 ASP141 SER142 VAL143 PHE144 LEU145 ARG146 VAL147 ILE148 GLY149 GLU150 ALA151 TYR152 ILE153 PRO154 ILE155 ALA156 PHE157 ARG158 MET159 ALA160 LEU161 ALA162 ALA163 ASP164 PRO165 THR166 THR167 LYS168 LEU169 TYR170 TYR171 ASN172 ASP173 TYR174 ASN175 LEU176 GLU177 TYR178 GLY179 ASN180 ALA181 LYS182 THR183 GLU184 GLY185 ALA186 LYS187 ARG188 ILE189 ALA190 ARG191 LEU192 VAL193 LYS194 SER195 TYR196 GLY197 LEU198 ARG199 ILE200 ASP201 GLY202 ILE203 GLY204 LEU205 GLN206 ALA207 HIS208 MET209 THR210 SER211 GLU212 SER213 THR214 PRO215 THR216 GLN217 ASN218 THR219 PRO220 THR221 PRO222 SER223 ARG224 ALA225 LYS226 LEU227 ALA228 SER229 VAL230 LEU231 GLN232 GLY233 LEU234 ALA235 ASP236 LEU237 GLY238 VAL239 ASP240 VAL241 ALA242 TYR243 THR244 GLU245 LEU246 ASP247 ILE248 ARG249 MET250 ASN251 THR252 PRO253 ALA254 THR255 GLN256 GLN257 LYS258 LEU259 GLN260 THR261 ASN262 ALA263 ASP264 ALA265 TYR266 ALA267 ARG268 ILE269 VAL270 GLY271 SER272 CYS273 MET274 ASP275 VAL276 LYS277 ARG278 CYS279 VAL280 GLY281 ILE282 THR283 VAL284 TRP285 GLY286 ILE287 SER288 ASP289 LYS290 TYR291 SER292 TRP293 VAL294 PRO295 GLY296 THR297 PHE298 PRO299 GLY300 GLU301 GLY302 SER303 ALA304 LEU305 LEU306 TRP307 ASN308 ASP309 ASN310 PHE311 GLN312 LYS313 LYS314 PRO315 SER316 TYR317 THR318 SER319 THR320 LEU321 ASN322 THR323 ILE324 ASN325 ARG326
Unit 4 ALA1 ALA2 SER3 GLY4 LEU5 GLU6 ALA7 ALA8 MET9 LYS10 ALA11 ALA12 GLY13 LYS14 GLN15 TYR16 PHE17 GLY18 THR19 ALA20 LEU21 THR22 VAL23 ARG24 ASN25 ASP26 GLN27 GLY28 GLU29 ILE30 ASP31 ILE32 ILE33 ASN34 ASN35 LYS36 ASN37 GLU38 ILE39 GLY40 SER41 ILE42 THR43 PRO44 GLU45 ASN46 ALA47 MET48 LYS49 TRP50 GLU51 ALA52 ILE53 GLN54 PRO55 ASN56 ARG57 GLY58 GLN59 PHE60 ASN61 TRP62 GLY63 PRO64 ALA65 ASP66 GLN67 HIS68 ALA69 ALA70 ALA71 ALA72 THR73 SER74 ARG75 GLY76 TYR77 GLU78 LEU79 ARG80 CYS81 HIS82 THR83 LEU84 VAL85 TRP86 HIS87 SER88 GLN89 LEU90 PRO91 SER92 TRP93 VAL94 ALA95 ASN96 GLY97 ASN98 TRP99 ASN100 ASN101 GLN102 THR103 LEU104 GLN105 ALA106 VAL107 MET108 ARG109 ASP110 HIS111 ILE112 ASN113 ALA114 VAL115 MET116 GLY117 ARG118 TYR119 ARG120 GLY121 LYS122 CYS123 THR124 HIS125 TRP126 ASP127 VAL128 VAL129 ASN130 GLU131 ALA132 LEU133 ASN134 GLU135 ASP136 GLY137 THR138 TYR139 ARG140 ASP141 SER142 VAL143 PHE144 LEU145 ARG146 VAL147 ILE148 GLY149 GLU150 ALA151 TYR152 ILE153 PRO154 ILE155 ALA156 PHE157 ARG158 MET159 ALA160 LEU161 ALA162 ALA163 ASP164 PRO165 THR166 THR167 LYS168 LEU169 TYR170 TYR171 ASN172 ASP173 TYR174 ASN175 LEU176 GLU177 TYR178 GLY179 ASN180 ALA181 LYS182 THR183 GLU184 GLY185 ALA186 LYS187 ARG188 ILE189 ALA190 ARG191 LEU192 VAL193 LYS194 SER195 TYR196 GLY197 LEU198 ARG199 ILE200 ASP201 GLY202 ILE203 GLY204 LEU205 GLN206 ALA207 HIS208 MET209 THR210 SER211 GLU212 SER213 THR214 PRO215 THR216 GLN217 ASN218 THR219 PRO220 THR221 PRO222 SER223 ARG224 ALA225 LYS226 LEU227 ALA228 SER229 VAL230 LEU231 GLN232 GLY233 LEU234 ALA235 ASP236 LEU237 GLY238 VAL239 ASP240 VAL241 ALA242 TYR243 THR244 GLU245 LEU246 ASP247 ILE248 ARG249 MET250 ASN251 THR252 PRO253 ALA254 THR255 GLN256 GLN257 LYS258 LEU259 GLN260 THR261 ASN262 ALA263 ASP264 ALA265 TYR266 ALA267 ARG268 ILE269 VAL270 GLY271 SER272 CYS273 MET274 ASP275 VAL276 LYS277 ARG278 CYS279 VAL280 GLY281 ILE282 THR283 VAL284 TRP285 GLY286 ILE287 SER288 ASP289 LYS290 TYR291 SER292 TRP293 VAL294 PRO295 GLY296 THR297 PHE298 PRO299 GLY300 GLU301 GLY302 SER303 ALA304 LEU305 LEU306 TRP307 ASN308 ASP309 ASN310 PHE311 GLN312 LYS313 LYS314 PRO315 SER316 TYR317 THR318 SER319 THR320 LEU321 ASN322 THR323 ILE324 ASN325 ARG326 ARG327
Unit 5 ALA1 ALA2 SER3 GLY4 LEU5 GLU6 ALA7 ALA8 MET9 LYS10 ALA11 ALA12 GLY13 LYS14 GLN15 TYR16 PHE17 GLY18 THR19 ALA20 LEU21 THR22 VAL23 ARG24 ASN25 ASP26 GLN27 GLY28 GLU29 ILE30 ASP31 ILE32 ILE33 ASN34 ASN35 LYS36 ASN37 GLU38 ILE39 GLY40 SER41 ILE42 THR43 PRO44 GLU45 ASN46 ALA47 MET48 LYS49 TRP50 GLU51 ALA52 ILE53 GLN54 PRO55 ASN56 ARG57 GLY58 GLN59 PHE60 ASN61 TRP62 GLY63 PRO64 ALA65 ASP66 GLN67 HIS68 ALA69 ALA70 ALA71 ALA72 THR73 SER74 ARG75 GLY76 TYR77 GLU78 LEU79 ARG80 CYS81 HIS82 THR83 LEU84 VAL85 TRP86 HIS87 SER88 GLN89 LEU90 PRO91 SER92 TRP93 VAL94 ALA95 ASN96 GLY97 ASN98 TRP99 ASN100 ASN101 GLN102 THR103 LEU104 GLN105 ALA106 VAL107 MET108 ARG109 ASP110 HIS111 ILE112 ASN113 ALA114 VAL115 MET116 GLY117 ARG118 TYR119 ARG120 GLY121 LYS122 CYS123 THR124 HIS125 TRP126 ASP127 VAL128 VAL129 ASN130 GLU131 ALA132 LEU133 ASN134 GLU135 ASP136 GLY137 THR138 TYR139 ARG140 ASP141 SER142 VAL143 PHE144 LEU145 ARG146 VAL147 ILE148 GLY149 GLU150 ALA151 TYR152 ILE153 PRO154 ILE155 ALA156 PHE157 ARG158 MET159 ALA160 LEU161 ALA162 ALA163 ASP164 PRO165 THR166 THR167 LYS168 LEU169 TYR170 TYR171 ASN172 ASP173 TYR174 ASN175 LEU176 GLU177 TYR178 GLY179 ASN180 ALA181 LYS182 THR183 GLU184 GLY185 ALA186 LYS187 ARG188 ILE189 ALA190 ARG191 LEU192 VAL193 LYS194 SER195 TYR196 GLY197 LEU198 ARG199 ILE200 ASP201 GLY202 ILE203 GLY204 LEU205 GLN206 ALA207 HIS208 MET209 THR210 SER211 GLU212 SER213 THR214 PRO215 THR216 GLN217 ASN218 THR219 PRO220 THR221 PRO222 SER223 ARG224 ALA225 LYS226 LEU227 ALA228 SER229 VAL230 LEU231 GLN232 GLY233 LEU234 ALA235 ASP236 LEU237 GLY238 VAL239 ASP240 VAL241 ALA242 TYR243 THR244 GLU245 LEU246 ASP247 ILE248 ARG249 MET250 ASN251 THR252 PRO253 ALA254 THR255 GLN256 GLN257 LYS258 LEU259 GLN260 THR261 ASN262 ALA263 ASP264 ALA265 TYR266 ALA267 ARG268 ILE269 VAL270 GLY271 SER272 CYS273 MET274 ASP275 VAL276 LYS277 ARG278 CYS279 VAL280 GLY281 ILE282 THR283 VAL284 TRP285 GLY286 ILE287 SER288 ASP289 LYS290 TYR291 SER292 TRP293 VAL294 PRO295 GLY296 THR297 PHE298 PRO299 GLY300 GLU301 GLY302 SER303 ALA304 LEU305 LEU306 TRP307 ASN308 ASP309 ASN310 PHE311 GLN312 LYS313 LYS314 PRO315 SER316 TYR317 THR318 SER319 THR320 LEU321 ASN322 THR323 ILE324 ASN325 ARG326
Ligands
Unit 6 NAG1 NAG2 BMA3
Unit 7 NAG1 NAG2 BMA3 MAN4 MAN5
Unit 8 NAG1 NAG2 BMA3
Unit 9 NAG1 NAG2 BMA3 MAN4
Unit 10 NAG1 NAG2 BMA3 MAN4
Unit 11 EDO400 EDO401 EDO402 EDO403 EDO404 EDO409 EDO413
Unit 12 EDO400 EDO401 EDO402 EDO403 EDO404 EDO405 EDO407
Unit 13 EDO400 EDO401 EDO406 EDO411 EDO412 EDO414
Unit 14 EDO401 EDO402 EDO408
Unit 15 EDO406 EDO407 EDO410
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany