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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THE COMPLEX OF TRIM33 PHD-BROMO AND H3( K9ME3K14ACK18ACK23AC HISTONE PEPTIDE
Keywords TRIM33, PHD, BROMODOMAIN, TGF-BETA, EPIGENETICS, HISTONE, METHYLATION, K9ME3, K14AC, K18AC, K23AC, TRANSCRIPTION
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3U5P     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   E3 UBIQUITIN-PROTEIN LIGASE TRIM33  A 188 1522 0
2  Protein   HISTONE H3.1  I 18 108 29
3  Protein   E3 UBIQUITIN-PROTEIN LIGASE TRIM33  B 188 1522 0
4  Protein   HISTONE H3.1  J 16 104 24
5  Protein   E3 UBIQUITIN-PROTEIN LIGASE TRIM33  C 188 1522 0
6  Protein   HISTONE H3.1  K 16 104 24
7  Protein   E3 UBIQUITIN-PROTEIN LIGASE TRIM33  D 188 1522 0
8  Protein   HISTONE H3.1  L 18 108 29
9  Protein   E3 UBIQUITIN-PROTEIN LIGASE TRIM33  E 188 1522 0
10  Protein   HISTONE H3.1  M 19 117 29
11  Protein   E3 UBIQUITIN-PROTEIN LIGASE TRIM33  F 188 1522 0
12  Protein   HISTONE H3.1  N 16 104 24
13  Protein   E3 UBIQUITIN-PROTEIN LIGASE TRIM33  G 188 1522 0
14  Protein   HISTONE H3.1  O 18 108 29
15  Protein   E3 UBIQUITIN-PROTEIN LIGASE TRIM33  H 188 1522 0
16  Protein   HISTONE H3.1  P 16 104 24
17  Ligand   E3 UBIQUITIN-PROTEIN LIGASE TRIM33  A 2 0 2
18  Ligand   E3 UBIQUITIN-PROTEIN LIGASE TRIM33  B 2 0 2
19  Ligand   E3 UBIQUITIN-PROTEIN LIGASE TRIM33  C 2 0 2
20  Ligand   E3 UBIQUITIN-PROTEIN LIGASE TRIM33  D 2 0 2
21  Ligand   E3 UBIQUITIN-PROTEIN LIGASE TRIM33  E 2 0 2
22  Ligand   E3 UBIQUITIN-PROTEIN LIGASE TRIM33  F 2 0 2
23  Ligand   E3 UBIQUITIN-PROTEIN LIGASE TRIM33  G 2 0 2
24  Ligand   E3 UBIQUITIN-PROTEIN LIGASE TRIM33  H 2 0 2
total       1657 13033 228

Proteins
Unit 1 ASP884 PRO885 ASN886 GLU887 ASP888 TRP889 CYS890 ALA891 VAL892 CYS893 GLN894 ASN895 GLY896 GLY897 ASP898 LEU899 LEU900 CYS901 CYS902 GLU903 LYS904 CYS905 PRO906 LYS907 VAL908 PHE909 HIS910 LEU911 THR912 CYS913 HIS914 VAL915 PRO916 THR917 LEU918 LEU919 SER920 PHE921 PRO922 SER923 GLY924 ASP925 TRP926 ILE927 CYS928 THR929 PHE930 CYS931 ARG932 ASP933 ILE934 GLY935 LYS936 PRO937 GLU938 VAL939 GLU940 TYR941 ASP942 CYS943 ASP944 ASN945 LEU946 GLN947 HIS948 SER949 LYS950 GLY957 LEU958 SER959 PRO960 VAL961 ASP962 GLN963 ARG964 LYS965 CYS966 GLU967 ARG968 LEU969 LEU970 LEU971 TYR972 LEU973 TYR974 CYS975 HIS976 GLU977 LEU978 SER979 ILE980 GLU981 PHE982 GLN983 GLU984 PRO985 VAL986 PRO987 ALA988 SER989 ILE990 PRO991 ASN992 TYR993 TYR994 LYS995 ILE996 ILE997 LYS998 LYS999 PRO1000 MET1001 ASP1002 LEU1003 SER1004 THR1005 VAL1006 LYS1007 LYS1008 LYS1009 LEU1010 GLN1011 LYS1012 LYS1013 HIS1014 SER1015 GLN1016 HIS1017 TYR1018 GLN1019 ILE1020 PRO1021 ASP1022 ASP1023 PHE1024 VAL1025 ALA1026 ASP1027 VAL1028 ARG1029 LEU1030 ILE1031 PHE1032 LYS1033 ASN1034 CYS1035 GLU1036 ARG1037 PHE1038 ASN1039 GLU1040 MET1041 MET1042 LYS1043 VAL1044 VAL1045 GLN1046 VAL1047 TYR1048 ALA1049 SER1060 GLU1061 VAL1062 ALA1063 GLN1064 ALA1065 GLY1066 LYS1067 ALA1068 VAL1069 ALA1070 LEU1071 TYR1072 PHE1073 GLU1074 ASP1075 LYS1076 LEU1077 THR1078 GLU1079 ILE1080 TYR1081 SER1082 ASP1083 ARG1084 THR1085 PHE1086 ALA1087
Unit 2 ALA1 ARG2 THR3 LYS4 GLN5 THR6 ALA7 ARG8 M3L9 SER10 THR11 GLY12 GLY13 ALY14 ALA15 PRO16 ARG17 ALY18
Unit 3 ASP884 PRO885 ASN886 GLU887 ASP888 TRP889 CYS890 ALA891 VAL892 CYS893 GLN894 ASN895 GLY896 GLY897 ASP898 LEU899 LEU900 CYS901 CYS902 GLU903 LYS904 CYS905 PRO906 LYS907 VAL908 PHE909 HIS910 LEU911 THR912 CYS913 HIS914 VAL915 PRO916 THR917 LEU918 LEU919 SER920 PHE921 PRO922 SER923 GLY924 ASP925 TRP926 ILE927 CYS928 THR929 PHE930 CYS931 ARG932 ASP933 ILE934 GLY935 LYS936 PRO937 GLU938 VAL939 GLU940 TYR941 ASP942 CYS943 ASP944 ASN945 LEU946 GLN947 HIS948 SER949 LYS950 GLY957 LEU958 SER959 PRO960 VAL961 ASP962 GLN963 ARG964 LYS965 CYS966 GLU967 ARG968 LEU969 LEU970 LEU971 TYR972 LEU973 TYR974 CYS975 HIS976 GLU977 LEU978 SER979 ILE980 GLU981 PHE982 GLN983 GLU984 PRO985 VAL986 PRO987 ALA988 SER989 ILE990 PRO991 ASN992 TYR993 TYR994 LYS995 ILE996 ILE997 LYS998 LYS999 PRO1000 MET1001 ASP1002 LEU1003 SER1004 THR1005 VAL1006 LYS1007 LYS1008 LYS1009 LEU1010 GLN1011 LYS1012 LYS1013 HIS1014 SER1015 GLN1016 HIS1017 TYR1018 GLN1019 ILE1020 PRO1021 ASP1022 ASP1023 PHE1024 VAL1025 ALA1026 ASP1027 VAL1028 ARG1029 LEU1030 ILE1031 PHE1032 LYS1033 ASN1034 CYS1035 GLU1036 ARG1037 PHE1038 ASN1039 GLU1040 MET1041 MET1042 LYS1043 VAL1044 VAL1045 GLN1046 VAL1047 TYR1048 ALA1049 SER1060 GLU1061 VAL1062 ALA1063 GLN1064 ALA1065 GLY1066 LYS1067 ALA1068 VAL1069 ALA1070 LEU1071 TYR1072 PHE1073 GLU1074 ASP1075 LYS1076 LEU1077 THR1078 GLU1079 ILE1080 TYR1081 SER1082 ASP1083 ARG1084 THR1085 PHE1086 ALA1087
Unit 4 ALA1 ARG2 THR3 LYS4 GLN5 THR6 ALA7 ARG8 M3L9 SER10 THR11 GLY12 ALA15 PRO16 ARG17 ALY18
Unit 5 ASP884 PRO885 ASN886 GLU887 ASP888 TRP889 CYS890 ALA891 VAL892 CYS893 GLN894 ASN895 GLY896 GLY897 ASP898 LEU899 LEU900 CYS901 CYS902 GLU903 LYS904 CYS905 PRO906 LYS907 VAL908 PHE909 HIS910 LEU911 THR912 CYS913 HIS914 VAL915 PRO916 THR917 LEU918 LEU919 SER920 PHE921 PRO922 SER923 GLY924 ASP925 TRP926 ILE927 CYS928 THR929 PHE930 CYS931 ARG932 ASP933 ILE934 GLY935 LYS936 PRO937 GLU938 VAL939 GLU940 TYR941 ASP942 CYS943 ASP944 ASN945 LEU946 GLN947 HIS948 SER949 LYS950 GLY957 LEU958 SER959 PRO960 VAL961 ASP962 GLN963 ARG964 LYS965 CYS966 GLU967 ARG968 LEU969 LEU970 LEU971 TYR972 LEU973 TYR974 CYS975 HIS976 GLU977 LEU978 SER979 ILE980 GLU981 PHE982 GLN983 GLU984 PRO985 VAL986 PRO987 ALA988 SER989 ILE990 PRO991 ASN992 TYR993 TYR994 LYS995 ILE996 ILE997 LYS998 LYS999 PRO1000 MET1001 ASP1002 LEU1003 SER1004 THR1005 VAL1006 LYS1007 LYS1008 LYS1009 LEU1010 GLN1011 LYS1012 LYS1013 HIS1014 SER1015 GLN1016 HIS1017 TYR1018 GLN1019 ILE1020 PRO1021 ASP1022 ASP1023 PHE1024 VAL1025 ALA1026 ASP1027 VAL1028 ARG1029 LEU1030 ILE1031 PHE1032 LYS1033 ASN1034 CYS1035 GLU1036 ARG1037 PHE1038 ASN1039 GLU1040 MET1041 MET1042 LYS1043 VAL1044 VAL1045 GLN1046 VAL1047 TYR1048 ALA1049 SER1060 GLU1061 VAL1062 ALA1063 GLN1064 ALA1065 GLY1066 LYS1067 ALA1068 VAL1069 ALA1070 LEU1071 TYR1072 PHE1073 GLU1074 ASP1075 LYS1076 LEU1077 THR1078 GLU1079 ILE1080 TYR1081 SER1082 ASP1083 ARG1084 THR1085 PHE1086 ALA1087
Unit 6 ALA1 ARG2 THR3 LYS4 GLN5 THR6 ALA7 ARG8 M3L9 SER10 THR11 GLY12 ALA15 PRO16 ARG17 ALY18
Unit 7 ASP884 PRO885 ASN886 GLU887 ASP888 TRP889 CYS890 ALA891 VAL892 CYS893 GLN894 ASN895 GLY896 GLY897 ASP898 LEU899 LEU900 CYS901 CYS902 GLU903 LYS904 CYS905 PRO906 LYS907 VAL908 PHE909 HIS910 LEU911 THR912 CYS913 HIS914 VAL915 PRO916 THR917 LEU918 LEU919 SER920 PHE921 PRO922 SER923 GLY924 ASP925 TRP926 ILE927 CYS928 THR929 PHE930 CYS931 ARG932 ASP933 ILE934 GLY935 LYS936 PRO937 GLU938 VAL939 GLU940 TYR941 ASP942 CYS943 ASP944 ASN945 LEU946 GLN947 HIS948 SER949 LYS950 GLY957 LEU958 SER959 PRO960 VAL961 ASP962 GLN963 ARG964 LYS965 CYS966 GLU967 ARG968 LEU969 LEU970 LEU971 TYR972 LEU973 TYR974 CYS975 HIS976 GLU977 LEU978 SER979 ILE980 GLU981 PHE982 GLN983 GLU984 PRO985 VAL986 PRO987 ALA988 SER989 ILE990 PRO991 ASN992 TYR993 TYR994 LYS995 ILE996 ILE997 LYS998 LYS999 PRO1000 MET1001 ASP1002 LEU1003 SER1004 THR1005 VAL1006 LYS1007 LYS1008 LYS1009 LEU1010 GLN1011 LYS1012 LYS1013 HIS1014 SER1015 GLN1016 HIS1017 TYR1018 GLN1019 ILE1020 PRO1021 ASP1022 ASP1023 PHE1024 VAL1025 ALA1026 ASP1027 VAL1028 ARG1029 LEU1030 ILE1031 PHE1032 LYS1033 ASN1034 CYS1035 GLU1036 ARG1037 PHE1038 ASN1039 GLU1040 MET1041 MET1042 LYS1043 VAL1044 VAL1045 GLN1046 VAL1047 TYR1048 ALA1049 SER1060 GLU1061 VAL1062 ALA1063 GLN1064 ALA1065 GLY1066 LYS1067 ALA1068 VAL1069 ALA1070 LEU1071 TYR1072 PHE1073 GLU1074 ASP1075 LYS1076 LEU1077 THR1078 GLU1079 ILE1080 TYR1081 SER1082 ASP1083 ARG1084 THR1085 PHE1086 ALA1087
Unit 8 ALA1 ARG2 THR3 LYS4 GLN5 THR6 ALA7 ARG8 M3L9 SER10 THR11 GLY12 GLY13 ALY14 ALA15 PRO16 ARG17 ALY18
Unit 9 ASP884 PRO885 ASN886 GLU887 ASP888 TRP889 CYS890 ALA891 VAL892 CYS893 GLN894 ASN895 GLY896 GLY897 ASP898 LEU899 LEU900 CYS901 CYS902 GLU903 LYS904 CYS905 PRO906 LYS907 VAL908 PHE909 HIS910 LEU911 THR912 CYS913 HIS914 VAL915 PRO916 THR917 LEU918 LEU919 SER920 PHE921 PRO922 SER923 GLY924 ASP925 TRP926 ILE927 CYS928 THR929 PHE930 CYS931 ARG932 ASP933 ILE934 GLY935 LYS936 PRO937 GLU938 VAL939 GLU940 TYR941 ASP942 CYS943 ASP944 ASN945 LEU946 GLN947 HIS948 SER949 LYS950 GLY957 LEU958 SER959 PRO960 VAL961 ASP962 GLN963 ARG964 LYS965 CYS966 GLU967 ARG968 LEU969 LEU970 LEU971 TYR972 LEU973 TYR974 CYS975 HIS976 GLU977 LEU978 SER979 ILE980 GLU981 PHE982 GLN983 GLU984 PRO985 VAL986 PRO987 ALA988 SER989 ILE990 PRO991 ASN992 TYR993 TYR994 LYS995 ILE996 ILE997 LYS998 LYS999 PRO1000 MET1001 ASP1002 LEU1003 SER1004 THR1005 VAL1006 LYS1007 LYS1008 LYS1009 LEU1010 GLN1011 LYS1012 LYS1013 HIS1014 SER1015 GLN1016 HIS1017 TYR1018 GLN1019 ILE1020 PRO1021 ASP1022 ASP1023 PHE1024 VAL1025 ALA1026 ASP1027 VAL1028 ARG1029 LEU1030 ILE1031 PHE1032 LYS1033 ASN1034 CYS1035 GLU1036 ARG1037 PHE1038 ASN1039 GLU1040 MET1041 MET1042 LYS1043 VAL1044 VAL1045 GLN1046 VAL1047 TYR1048 ALA1049 SER1060 GLU1061 VAL1062 ALA1063 GLN1064 ALA1065 GLY1066 LYS1067 ALA1068 VAL1069 ALA1070 LEU1071 TYR1072 PHE1073 GLU1074 ASP1075 LYS1076 LEU1077 THR1078 GLU1079 ILE1080 TYR1081 SER1082 ASP1083 ARG1084 THR1085 PHE1086 ALA1087
Unit 10 ALA1 ARG2 THR3 LYS4 GLN5 THR6 ALA7 ARG8 M3L9 SER10 THR11 GLY12 GLY13 ALY14 ALA15 PRO16 ARG17 ALY18 GLN19
Unit 11 ASP884 PRO885 ASN886 GLU887 ASP888 TRP889 CYS890 ALA891 VAL892 CYS893 GLN894 ASN895 GLY896 GLY897 ASP898 LEU899 LEU900 CYS901 CYS902 GLU903 LYS904 CYS905 PRO906 LYS907 VAL908 PHE909 HIS910 LEU911 THR912 CYS913 HIS914 VAL915 PRO916 THR917 LEU918 LEU919 SER920 PHE921 PRO922 SER923 GLY924 ASP925 TRP926 ILE927 CYS928 THR929 PHE930 CYS931 ARG932 ASP933 ILE934 GLY935 LYS936 PRO937 GLU938 VAL939 GLU940 TYR941 ASP942 CYS943 ASP944 ASN945 LEU946 GLN947 HIS948 SER949 LYS950 GLY957 LEU958 SER959 PRO960 VAL961 ASP962 GLN963 ARG964 LYS965 CYS966 GLU967 ARG968 LEU969 LEU970 LEU971 TYR972 LEU973 TYR974 CYS975 HIS976 GLU977 LEU978 SER979 ILE980 GLU981 PHE982 GLN983 GLU984 PRO985 VAL986 PRO987 ALA988 SER989 ILE990 PRO991 ASN992 TYR993 TYR994 LYS995 ILE996 ILE997 LYS998 LYS999 PRO1000 MET1001 ASP1002 LEU1003 SER1004 THR1005 VAL1006 LYS1007 LYS1008 LYS1009 LEU1010 GLN1011 LYS1012 LYS1013 HIS1014 SER1015 GLN1016 HIS1017 TYR1018 GLN1019 ILE1020 PRO1021 ASP1022 ASP1023 PHE1024 VAL1025 ALA1026 ASP1027 VAL1028 ARG1029 LEU1030 ILE1031 PHE1032 LYS1033 ASN1034 CYS1035 GLU1036 ARG1037 PHE1038 ASN1039 GLU1040 MET1041 MET1042 LYS1043 VAL1044 VAL1045 GLN1046 VAL1047 TYR1048 ALA1049 SER1060 GLU1061 VAL1062 ALA1063 GLN1064 ALA1065 GLY1066 LYS1067 ALA1068 VAL1069 ALA1070 LEU1071 TYR1072 PHE1073 GLU1074 ASP1075 LYS1076 LEU1077 THR1078 GLU1079 ILE1080 TYR1081 SER1082 ASP1083 ARG1084 THR1085 PHE1086 ALA1087
Unit 12 ALA1 ARG2 THR3 LYS4 GLN5 THR6 ALA7 ARG8 M3L9 SER10 THR11 GLY12 ALA15 PRO16 ARG17 ALY18
Unit 13 ASP884 PRO885 ASN886 GLU887 ASP888 TRP889 CYS890 ALA891 VAL892 CYS893 GLN894 ASN895 GLY896 GLY897 ASP898 LEU899 LEU900 CYS901 CYS902 GLU903 LYS904 CYS905 PRO906 LYS907 VAL908 PHE909 HIS910 LEU911 THR912 CYS913 HIS914 VAL915 PRO916 THR917 LEU918 LEU919 SER920 PHE921 PRO922 SER923 GLY924 ASP925 TRP926 ILE927 CYS928 THR929 PHE930 CYS931 ARG932 ASP933 ILE934 GLY935 LYS936 PRO937 GLU938 VAL939 GLU940 TYR941 ASP942 CYS943 ASP944 ASN945 LEU946 GLN947 HIS948 SER949 LYS950 GLY957 LEU958 SER959 PRO960 VAL961 ASP962 GLN963 ARG964 LYS965 CYS966 GLU967 ARG968 LEU969 LEU970 LEU971 TYR972 LEU973 TYR974 CYS975 HIS976 GLU977 LEU978 SER979 ILE980 GLU981 PHE982 GLN983 GLU984 PRO985 VAL986 PRO987 ALA988 SER989 ILE990 PRO991 ASN992 TYR993 TYR994 LYS995 ILE996 ILE997 LYS998 LYS999 PRO1000 MET1001 ASP1002 LEU1003 SER1004 THR1005 VAL1006 LYS1007 LYS1008 LYS1009 LEU1010 GLN1011 LYS1012 LYS1013 HIS1014 SER1015 GLN1016 HIS1017 TYR1018 GLN1019 ILE1020 PRO1021 ASP1022 ASP1023 PHE1024 VAL1025 ALA1026 ASP1027 VAL1028 ARG1029 LEU1030 ILE1031 PHE1032 LYS1033 ASN1034 CYS1035 GLU1036 ARG1037 PHE1038 ASN1039 GLU1040 MET1041 MET1042 LYS1043 VAL1044 VAL1045 GLN1046 VAL1047 TYR1048 ALA1049 SER1060 GLU1061 VAL1062 ALA1063 GLN1064 ALA1065 GLY1066 LYS1067 ALA1068 VAL1069 ALA1070 LEU1071 TYR1072 PHE1073 GLU1074 ASP1075 LYS1076 LEU1077 THR1078 GLU1079 ILE1080 TYR1081 SER1082 ASP1083 ARG1084 THR1085 PHE1086 ALA1087
Unit 14 ALA1 ARG2 THR3 LYS4 GLN5 THR6 ALA7 ARG8 M3L9 SER10 THR11 GLY12 GLY13 ALY14 ALA15 PRO16 ARG17 ALY18
Unit 15 ASP884 PRO885 ASN886 GLU887 ASP888 TRP889 CYS890 ALA891 VAL892 CYS893 GLN894 ASN895 GLY896 GLY897 ASP898 LEU899 LEU900 CYS901 CYS902 GLU903 LYS904 CYS905 PRO906 LYS907 VAL908 PHE909 HIS910 LEU911 THR912 CYS913 HIS914 VAL915 PRO916 THR917 LEU918 LEU919 SER920 PHE921 PRO922 SER923 GLY924 ASP925 TRP926 ILE927 CYS928 THR929 PHE930 CYS931 ARG932 ASP933 ILE934 GLY935 LYS936 PRO937 GLU938 VAL939 GLU940 TYR941 ASP942 CYS943 ASP944 ASN945 LEU946 GLN947 HIS948 SER949 LYS950 GLY957 LEU958 SER959 PRO960 VAL961 ASP962 GLN963 ARG964 LYS965 CYS966 GLU967 ARG968 LEU969 LEU970 LEU971 TYR972 LEU973 TYR974 CYS975 HIS976 GLU977 LEU978 SER979 ILE980 GLU981 PHE982 GLN983 GLU984 PRO985 VAL986 PRO987 ALA988 SER989 ILE990 PRO991 ASN992 TYR993 TYR994 LYS995 ILE996 ILE997 LYS998 LYS999 PRO1000 MET1001 ASP1002 LEU1003 SER1004 THR1005 VAL1006 LYS1007 LYS1008 LYS1009 LEU1010 GLN1011 LYS1012 LYS1013 HIS1014 SER1015 GLN1016 HIS1017 TYR1018 GLN1019 ILE1020 PRO1021 ASP1022 ASP1023 PHE1024 VAL1025 ALA1026 ASP1027 VAL1028 ARG1029 LEU1030 ILE1031 PHE1032 LYS1033 ASN1034 CYS1035 GLU1036 ARG1037 PHE1038 ASN1039 GLU1040 MET1041 MET1042 LYS1043 VAL1044 VAL1045 GLN1046 VAL1047 TYR1048 ALA1049 SER1060 GLU1061 VAL1062 ALA1063 GLN1064 ALA1065 GLY1066 LYS1067 ALA1068 VAL1069 ALA1070 LEU1071 TYR1072 PHE1073 GLU1074 ASP1075 LYS1076 LEU1077 THR1078 GLU1079 ILE1080 TYR1081 SER1082 ASP1083 ARG1084 THR1085 PHE1086 ALA1087
Unit 16 ALA1 ARG2 THR3 LYS4 GLN5 THR6 ALA7 ARG8 M3L9 SER10 THR11 GLY12 ALA15 PRO16 ARG17 ALY18

Ligands
Unit 17 ZN1 ZN2
Unit 18 ZN1 ZN2
Unit 19 ZN1 ZN2
Unit 20 ZN1 ZN2
Unit 21 ZN1 ZN2
Unit 22 ZN1 ZN2
Unit 23 ZN1 ZN2
Unit 24 ZN1 ZN2

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany