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Title | CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN TTHL1 IN COMPLEX WITH RNA FROM THERMUS THERMOPHILUS | |
Keywords | ROSSMANN FOLD, RIBOSOMAL PROTEIN, RRNA, RRNA BINDING, RIBOSO RNA BINDING PROTEIN COMPLEX | |
Experiment | X-ray diffraction | |
Number of Models | 1 |
Database | ID code | Status | Coordinate files | ||
Header | Asymmetric unit | Biological unit | |||
PDB | 3U4M | released | available | available | Quaternary Structure Server |
Unit | Type | Name | Chain ID | Residues | Atoms | Hetatoms |
---|---|---|---|---|---|---|
1 | Protein | 50S RIBOSOMAL PROTEIN L1 | A | 228 | 1742 | 0 |
2 | RNA | B | 80 | 1722 | 0 | |
3 | Ligand | 50S RIBOSOMAL PROTEIN L1 | A | 11 | 0 | 33 |
4 | Ligand | RNA (80-MER) | B | 10 | 0 | 38 |
5 | Water | 203 | 0 | 203 | ||
total | 532 | 3464 | 274 |
Unit 1 | PRO1 LYS2 HIS3 GLY4 LYS5 ARG6 TYR7 ARG8 ALA9 LEU10 LEU11 GLU12 LYS13 VAL14 ASP15 PRO16 ASN17 LYS18 ILE19 TYR20 THR21 ILE22 ASP23 GLU24 ALA25 ALA26 HIS27 LEU28 VAL29 LYS30 GLU31 LEU32 ALA33 THR34 ALA35 LYS36 PHE37 ASP38 GLU39 THR40 VAL41 GLU42 VAL43 HIS44 ALA45 LYS46 LEU47 GLY48 ILE49 ASP50 PRO51 ARG52 ARG53 SER54 ASP55 GLN56 ASN57 VAL58 ARG59 GLY60 THR61 VAL62 SER63 LEU64 PRO65 HIS66 GLY67 LEU68 GLY69 LYS70 GLN71 VAL72 ARG73 VAL74 LEU75 ALA76 ILE77 ALA78 LYS79 GLY80 GLU81 LYS82 ILE83 LYS84 GLU85 ALA86 GLU87 GLU88 ALA89 GLY90 ALA91 ASP92 TYR93 VAL94 GLY95 GLY96 GLU97 GLU98 ILE99 ILE100 GLN101 LYS102 ILE103 LEU104 ASP105 GLY106 TRP107 MET108 ASP109 PHE110 ASP111 ALA112 VAL113 VAL114 ALA115 THR116 PRO117 ASP118 VAL119 MET120 GLY121 ALA122 VAL123 GLY124 SER125 LYS126 LEU127 GLY128 ARG129 ILE130 LEU131 GLY132 PRO133 ARG134 GLY135 LEU136 LEU137 PRO138 ASN139 PRO140 LYS141 ALA142 GLY143 THR144 VAL145 GLY146 PHE147 ASN148 ILE149 GLY150 GLU151 ILE152 ILE153 ARG154 GLU155 ILE156 LYS157 ALA158 GLY159 ARG160 ILE161 GLU162 PHE163 ARG164 ASN165 ASP166 LYS167 THR168 GLY169 ALA170 ILE171 HIS172 ALA173 PRO174 VAL175 GLY176 LYS177 ALA178 SER179 PHE180 PRO181 PRO182 GLU183 LYS184 LEU185 ALA186 ASP187 ASN188 ILE189 ARG190 ALA191 PHE192 ILE193 ARG194 ALA195 LEU196 GLU197 ALA198 HIS199 LYS200 PRO201 GLU202 GLY203 ALA204 LYS205 GLY206 THR207 PHE208 LEU209 ARG210 SER211 VAL212 TYR213 VAL214 THR215 THR216 THR217 MET218 GLY219 PRO220 SER221 VAL222 ARG223 ILE224 ASN225 PRO226 HIS227 SER228 |
Unit 2 | G2105 G2106 G2107 A2108 U2109 G2110 C2111 G2112 U2113 A2114 G2115 G2116 A2117 U2118 A2119 G2120 G2121 U2122 G2123 G2124 G2125 A2126 G2127 C2128 C2129 U2130 G2131 U2132 G2133 A2134 A2135 C2136 C2137 C2138 C2139 C2140 G2141 C2142 C2143 U2144 C2145 C2146 G2147 G2148 G2149 U2150 G2151 G2152 G2153 G2154 G2155 G2156 G2157 A2158 G2159 G2160 C2161 G2162 C2163 C2164 G2165 G2166 U2167 G2168 A2169 A2170 A2171 U2172 A2173 C2174 C2175 A2176 C2177 C2178 C2179 U2180 U2181 C2182 C2183 C2184 |
Unit 3 | SO4301 MLI302 MLI303 MLI304 MG305 CL306 CL307 NA308 NA309 NA310 NA311 |
Unit 4 | SO42201 MLI2202 MLI2203 MLI2204 MLI2205 MG2206 MG2207 MG2208 MG2209 NA2210 |
Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.
Perl script: | PDBscan.pl (15 Sep 2016) |
Author: | Peter Slickers (slickers@leibniz-fli.de), IMB Jena, Germany |