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Sequence, Chains, Asymmetric and Biological Units

Title STRUCTURE OF A RIBOSWITCH-LIKE RNA-LIGAND COMPLEX FROM THE H VIRUS INTERNAL RIBOSOME ENTRY SITE
Keywords INTERNAL LOOP, REGULATORY MOTIF, AMINOBENZIMIDAZOLE BINDING,
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   3TZR     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  RNA    A 20 417 0
2  RNA    B 16 340 0
3  Ligand   5'-R(*CP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*UP*GP*UP*C *CP*C)-3'  A 9 0 44
4  Ligand    B 1 0 1
5 Water     81 0 81
total       127 757 126

Nucleic acids
Unit 1 C48 G49 A50 G51 G52 A53 A54 C55 U56 A57 C58 U59 G60 U61 C62 U63 U64 C65 C66 C67
Unit 2 G101 G102 U103 C104 G105 U106 G107 C108 A109 G110 C111 C112 U113 C114 G115 G116

Ligands
Unit 3 MG1 MG68 MG69 MG70 MG71 SO472 SO473 SO474 SS075
Unit 4 MG1

Chirality of ribose and phosphate atoms

Check the naming of phosphate and ribose substituents. Recommended for phosphate oxygens and for ribose hydrogens in NMR structures.


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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany