3TRZ - Sequence, Chains, Asymmetric and Biological Units

• Title: MOUSE LIN28A IN COMPLEX WITH LET-7D MICRORNA PRE-ELEMENT
• Keywords: MICRORNA BIOGENESIS, PROTEIN-RNA COMPLEX, PRE-ELEMENT, CCHC KNUCKLE, COLD SHOCK DOMAIN, RNA BINDING PROTEIN-RNA COMPLEX
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3TRZ	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PROTEIN LIN-28 HOMOLOG A	A	130	994	0
2	Protein	PROTEIN LIN-28 HOMOLOG A	B	130	994	0
3	Protein	PROTEIN LIN-28 HOMOLOG A	C	130	994	0
4	Protein	PROTEIN LIN-28 HOMOLOG A	D	130	994	0
5	Protein	PROTEIN LIN-28 HOMOLOG A	E	130	994	0
6	Protein	PROTEIN LIN-28 HOMOLOG A	F	130	994	0
7	RNA		U	21	433	20
8	RNA		V	21	433	20
9	RNA		W	21	433	20
10	RNA		X	21	433	20
11	RNA		Y	21	433	20
12	RNA		Z	21	433	20
13	Ligand	PROTEIN LIN-28 HOMOLOG A	A	2	0	2
14	Ligand	PROTEIN LIN-28 HOMOLOG A	B	2	0	2
15	Ligand	PROTEIN LIN-28 HOMOLOG A	C	2	0	2
16	Ligand	PROTEIN LIN-28 HOMOLOG A	D	2	0	2
17	Ligand	PROTEIN LIN-28 HOMOLOG A	E	2	0	2
18	Ligand	PROTEIN LIN-28 HOMOLOG A	F	2	0	2
total				918	8562	132

Proteins

Unit 1	PRO 35 GLN 36 LEU 37 LEU 38 HIS 39 GLY 40 ALA 41 GLY 42 ILE 43 CYS 44 LYS 45 TRP 46 PHE 47 ASN 48 VAL 49 ARG 50 MET 51 GLY 52 PHE 53 GLY 54 PHE 55 LEU 56 SER 57 MET 58 THR 59 ALA 60 ARG 61 ALA 62 GLY 63 VAL 64 ALA 65 LEU 66 ASP 67 PRO 68 PRO 69 VAL 70 ASP 71 VAL 72 PHE 73 VAL 74 HIS 75 GLN 76 SER 77 LYS 78 LEU 79 HIS 80 MET 81 GLU 82 GLY 83 PHE 84 ARG 85 SER 86 LEU 87 LYS 88 GLU 89 GLY 90 GLU 91 ALA 92 VAL 93 GLU 94 PHE 95 THR 96 PHE 97 LYS 98 LYS 99 SER 100 ALA 101 LYS 102 GLY 103 LEU 104 GLU 105 SER 106 ILE 107 ARG 108 VAL 109 THR 110 GLY 111 PRO 112 GLY 113 GLY 114 VAL 115 PHE 116 CYS 117 ILE 118 GLY 119 SER 120 GLU 121 ASP 137 ARG 138 CYS 139 TYR 140 ASN 141 CYS 142 GLY 143 GLY 144 LEU 145 ASP 146 HIS 147 HIS 148 ALA 149 LYS 150 GLU 151 CYS 152 LYS 153 LEU 154 PRO 155 PRO 156 GLN 157 PRO 158 LYS 159 LYS 160 CYS 161 HIS 162 PHE 163 CYS 164 GLN 165 SER 166 ILE 167 ASN 168 HIS 169 MET 170 VAL 171 ALA 172 SER 173 CYS 174 PRO 175 LEU 176 LYS 177 ALA 178 GLN 179
Unit 2	PRO 35 GLN 36 LEU 37 LEU 38 HIS 39 GLY 40 ALA 41 GLY 42 ILE 43 CYS 44 LYS 45 TRP 46 PHE 47 ASN 48 VAL 49 ARG 50 MET 51 GLY 52 PHE 53 GLY 54 PHE 55 LEU 56 SER 57 MET 58 THR 59 ALA 60 ARG 61 ALA 62 GLY 63 VAL 64 ALA 65 LEU 66 ASP 67 PRO 68 PRO 69 VAL 70 ASP 71 VAL 72 PHE 73 VAL 74 HIS 75 GLN 76 SER 77 LYS 78 LEU 79 HIS 80 MET 81 GLU 82 GLY 83 PHE 84 ARG 85 SER 86 LEU 87 LYS 88 GLU 89 GLY 90 GLU 91 ALA 92 VAL 93 GLU 94 PHE 95 THR 96 PHE 97 LYS 98 LYS 99 SER 100 ALA 101 LYS 102 GLY 103 LEU 104 GLU 105 SER 106 ILE 107 ARG 108 VAL 109 THR 110 GLY 111 PRO 112 GLY 113 GLY 114 VAL 115 PHE 116 CYS 117 ILE 118 GLY 119 SER 120 GLU 121 ASP 137 ARG 138 CYS 139 TYR 140 ASN 141 CYS 142 GLY 143 GLY 144 LEU 145 ASP 146 HIS 147 HIS 148 ALA 149 LYS 150 GLU 151 CYS 152 LYS 153 LEU 154 PRO 155 PRO 156 GLN 157 PRO 158 LYS 159 LYS 160 CYS 161 HIS 162 PHE 163 CYS 164 GLN 165 SER 166 ILE 167 ASN 168 HIS 169 MET 170 VAL 171 ALA 172 SER 173 CYS 174 PRO 175 LEU 176 LYS 177 ALA 178 GLN 179
Unit 3	PRO 35 GLN 36 LEU 37 LEU 38 HIS 39 GLY 40 ALA 41 GLY 42 ILE 43 CYS 44 LYS 45 TRP 46 PHE 47 ASN 48 VAL 49 ARG 50 MET 51 GLY 52 PHE 53 GLY 54 PHE 55 LEU 56 SER 57 MET 58 THR 59 ALA 60 ARG 61 ALA 62 GLY 63 VAL 64 ALA 65 LEU 66 ASP 67 PRO 68 PRO 69 VAL 70 ASP 71 VAL 72 PHE 73 VAL 74 HIS 75 GLN 76 SER 77 LYS 78 LEU 79 HIS 80 MET 81 GLU 82 GLY 83 PHE 84 ARG 85 SER 86 LEU 87 LYS 88 GLU 89 GLY 90 GLU 91 ALA 92 VAL 93 GLU 94 PHE 95 THR 96 PHE 97 LYS 98 LYS 99 SER 100 ALA 101 LYS 102 GLY 103 LEU 104 GLU 105 SER 106 ILE 107 ARG 108 VAL 109 THR 110 GLY 111 PRO 112 GLY 113 GLY 114 VAL 115 PHE 116 CYS 117 ILE 118 GLY 119 SER 120 GLU 121 ASP 137 ARG 138 CYS 139 TYR 140 ASN 141 CYS 142 GLY 143 GLY 144 LEU 145 ASP 146 HIS 147 HIS 148 ALA 149 LYS 150 GLU 151 CYS 152 LYS 153 LEU 154 PRO 155 PRO 156 GLN 157 PRO 158 LYS 159 LYS 160 CYS 161 HIS 162 PHE 163 CYS 164 GLN 165 SER 166 ILE 167 ASN 168 HIS 169 MET 170 VAL 171 ALA 172 SER 173 CYS 174 PRO 175 LEU 176 LYS 177 ALA 178 GLN 179
Unit 4	PRO 35 GLN 36 LEU 37 LEU 38 HIS 39 GLY 40 ALA 41 GLY 42 ILE 43 CYS 44 LYS 45 TRP 46 PHE 47 ASN 48 VAL 49 ARG 50 MET 51 GLY 52 PHE 53 GLY 54 PHE 55 LEU 56 SER 57 MET 58 THR 59 ALA 60 ARG 61 ALA 62 GLY 63 VAL 64 ALA 65 LEU 66 ASP 67 PRO 68 PRO 69 VAL 70 ASP 71 VAL 72 PHE 73 VAL 74 HIS 75 GLN 76 SER 77 LYS 78 LEU 79 HIS 80 MET 81 GLU 82 GLY 83 PHE 84 ARG 85 SER 86 LEU 87 LYS 88 GLU 89 GLY 90 GLU 91 ALA 92 VAL 93 GLU 94 PHE 95 THR 96 PHE 97 LYS 98 LYS 99 SER 100 ALA 101 LYS 102 GLY 103 LEU 104 GLU 105 SER 106 ILE 107 ARG 108 VAL 109 THR 110 GLY 111 PRO 112 GLY 113 GLY 114 VAL 115 PHE 116 CYS 117 ILE 118 GLY 119 SER 120 GLU 121 ASP 137 ARG 138 CYS 139 TYR 140 ASN 141 CYS 142 GLY 143 GLY 144 LEU 145 ASP 146 HIS 147 HIS 148 ALA 149 LYS 150 GLU 151 CYS 152 LYS 153 LEU 154 PRO 155 PRO 156 GLN 157 PRO 158 LYS 159 LYS 160 CYS 161 HIS 162 PHE 163 CYS 164 GLN 165 SER 166 ILE 167 ASN 168 HIS 169 MET 170 VAL 171 ALA 172 SER 173 CYS 174 PRO 175 LEU 176 LYS 177 ALA 178 GLN 179
Unit 5	PRO 35 GLN 36 LEU 37 LEU 38 HIS 39 GLY 40 ALA 41 GLY 42 ILE 43 CYS 44 LYS 45 TRP 46 PHE 47 ASN 48 VAL 49 ARG 50 MET 51 GLY 52 PHE 53 GLY 54 PHE 55 LEU 56 SER 57 MET 58 THR 59 ALA 60 ARG 61 ALA 62 GLY 63 VAL 64 ALA 65 LEU 66 ASP 67 PRO 68 PRO 69 VAL 70 ASP 71 VAL 72 PHE 73 VAL 74 HIS 75 GLN 76 SER 77 LYS 78 LEU 79 HIS 80 MET 81 GLU 82 GLY 83 PHE 84 ARG 85 SER 86 LEU 87 LYS 88 GLU 89 GLY 90 GLU 91 ALA 92 VAL 93 GLU 94 PHE 95 THR 96 PHE 97 LYS 98 LYS 99 SER 100 ALA 101 LYS 102 GLY 103 LEU 104 GLU 105 SER 106 ILE 107 ARG 108 VAL 109 THR 110 GLY 111 PRO 112 GLY 113 GLY 114 VAL 115 PHE 116 CYS 117 ILE 118 GLY 119 SER 120 GLU 121 ASP 137 ARG 138 CYS 139 TYR 140 ASN 141 CYS 142 GLY 143 GLY 144 LEU 145 ASP 146 HIS 147 HIS 148 ALA 149 LYS 150 GLU 151 CYS 152 LYS 153 LEU 154 PRO 155 PRO 156 GLN 157 PRO 158 LYS 159 LYS 160 CYS 161 HIS 162 PHE 163 CYS 164 GLN 165 SER 166 ILE 167 ASN 168 HIS 169 MET 170 VAL 171 ALA 172 SER 173 CYS 174 PRO 175 LEU 176 LYS 177 ALA 178 GLN 179
Unit 6	PRO 35 GLN 36 LEU 37 LEU 38 HIS 39 GLY 40 ALA 41 GLY 42 ILE 43 CYS 44 LYS 45 TRP 46 PHE 47 ASN 48 VAL 49 ARG 50 MET 51 GLY 52 PHE 53 GLY 54 PHE 55 LEU 56 SER 57 MET 58 THR 59 ALA 60 ARG 61 ALA 62 GLY 63 VAL 64 ALA 65 LEU 66 ASP 67 PRO 68 PRO 69 VAL 70 ASP 71 VAL 72 PHE 73 VAL 74 HIS 75 GLN 76 SER 77 LYS 78 LEU 79 HIS 80 MET 81 GLU 82 GLY 83 PHE 84 ARG 85 SER 86 LEU 87 LYS 88 GLU 89 GLY 90 GLU 91 ALA 92 VAL 93 GLU 94 PHE 95 THR 96 PHE 97 LYS 98 LYS 99 SER 100 ALA 101 LYS 102 GLY 103 LEU 104 GLU 105 SER 106 ILE 107 ARG 108 VAL 109 THR 110 GLY 111 PRO 112 GLY 113 GLY 114 VAL 115 PHE 116 CYS 117 ILE 118 GLY 119 SER 120 GLU 121 ASP 137 ARG 138 CYS 139 TYR 140 ASN 141 CYS 142 GLY 143 GLY 144 LEU 145 ASP 146 HIS 147 HIS 148 ALA 149 LYS 150 GLU 151 CYS 152 LYS 153 LEU 154 PRO 155 PRO 156 GLN 157 PRO 158 LYS 159 LYS 160 CYS 161 HIS 162 PHE 163 CYS 164 GLN 165 SER 166 ILE 167 ASN 168 HIS 169 MET 170 VAL 171 ALA 172 SER 173 CYS 174 PRO 175 LEU 176 LYS 177 ALA 178 GLN 179

Nucleic acids

Unit 7	GMP 1 G 2 G 3 C 4 A 5 G 6 G 7 G 8 A 9 U 10 U 11 U 12 U 13 G 14 C 15 C 16 C 17 G 18 G 19 A 20 G 21
Unit 8	GMP 1 G 2 G 3 C 4 A 5 G 6 G 7 G 8 A 9 U 10 U 11 U 12 U 13 G 14 C 15 C 16 C 17 G 18 G 19 A 20 G 21
Unit 9	GMP 1 G 2 G 3 C 4 A 5 G 6 G 7 G 8 A 9 U 10 U 11 U 12 U 13 G 14 C 15 C 16 C 17 G 18 G 19 A 20 G 21
Unit 10	GMP 1 G 2 G 3 C 4 A 5 G 6 G 7 G 8 A 9 U 10 U 11 U 12 U 13 G 14 C 15 C 16 C 17 G 18 G 19 A 20 G 21
Unit 11	GMP 1 G 2 G 3 C 4 A 5 G 6 G 7 G 8 A 9 U 10 U 11 U 12 U 13 G 14 C 15 C 16 C 17 G 18 G 19 A 20 G 21
Unit 12	GMP 1 G 2 G 3 C 4 A 5 G 6 G 7 G 8 A 9 U 10 U 11 U 12 U 13 G 14 C 15 C 16 C 17 G 18 G 19 A 20 G 21

Ligands

Unit 13	ZN 1 ZN 2
Unit 14	ZN 1 ZN 2
Unit 15	ZN 1 ZN 2
Unit 16	ZN 1 ZN 2
Unit 17	ZN 1 ZN 2
Unit 18	ZN 1 ZN 2