3TMQ - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF A 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDO BURKHOLDERIA PSEUDOMALLEI IN COMPLEX WITH D-ARABINOSE-5-PHO
• Keywords: SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CEN INFECTIOUS DISEASE, ALDOLASE BARREL, TRANSFERASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	3TMQ	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE 2	A	280	2078	0
2	Protein	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE 2	B	270	1968	0
3	Protein	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE 2	C	281	2076	0
4	Protein	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE 2	D	264	1922	0
5	Ligand	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE 2	A	5	0	30
6	Ligand	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE 2	B	4	0	16
7	Ligand	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE 2	C	6	0	34
8	Ligand	2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE 2	D	2	0	8
9	Water			629	0	629
total				1741	8044	717

Proteins

Unit 1	MET 1 ASN 2 VAL 3 ALA 4 ILE 5 SER 6 PRO 7 GLY 8 VAL 9 THR 10 ALA 11 GLY 12 ASN 13 SER 14 LEU 15 PRO 16 PHE 17 VAL 18 LEU 19 PHE 20 GLY 21 GLY 22 ILE 23 ASN 24 VAL 25 LEU 26 GLU 27 SER 28 LEU 29 ASP 30 PHE 31 THR 32 LEU 33 ASP 34 VAL 35 CYS 36 GLY 37 GLU 38 TYR 39 VAL 40 ALA 41 VAL 42 THR 43 ARG 44 LYS 45 LEU 46 GLY 47 ILE 48 PRO 49 PHE 50 VAL 51 PHE 52 LYS 53 ALA 54 SER 55 PHE 56 ASP 57 LYS 58 ALA 59 ASN 60 ARG 61 SER 62 SER 63 ILE 64 HIS 65 SER 66 TYR 67 ARG 68 GLY 69 VAL 70 GLY 71 LEU 72 ASP 73 GLU 74 GLY 75 LEU 76 LYS 77 ILE 78 PHE 79 ALA 80 GLU 81 VAL 82 LYS 83 ALA 84 ARG 85 PHE 86 GLY 87 VAL 88 PRO 89 VAL 90 ILE 91 THR 92 ASP 93 VAL 94 HIS 95 GLU 96 ALA 97 GLU 98 GLN 99 ALA 100 ALA 101 PRO 102 VAL 103 ALA 104 GLU 105 ILE 106 ALA 107 ASP 108 VAL 109 LEU 110 GLN 111 VAL 112 PRO 113 ALA 114 PHE 115 LEU 116 ALA 117 ARG 118 GLN 119 THR 120 ASP 121 LEU 122 VAL 123 VAL 124 ALA 125 ILE 126 ALA 127 LYS 128 ALA 129 GLY 130 LYS 131 PRO 132 VAL 133 ASN 134 VAL 135 LYS 136 LYS 137 PRO 138 GLN 139 PHE 140 MET 141 SER 142 PRO 143 THR 144 GLN 145 LEU 146 LYS 147 HIS 148 VAL 149 VAL 150 SER 151 LYS 152 CYS 153 GLY 154 GLU 155 VAL 156 GLY 157 ASN 158 ASP 159 ARG 160 VAL 161 MET 162 LEU 163 CYS 164 GLU 165 ARG 166 GLY 167 SER 168 SER 169 PHE 170 GLY 171 TYR 172 ASP 173 ASN 174 LEU 175 VAL 176 VAL 177 ASP 178 MET 179 LEU 180 GLY 181 PHE 182 ARG 183 GLN 184 MET 185 ALA 186 GLU 187 THR 188 THR 189 GLY 190 GLY 191 CYS 192 PRO 193 VAL 194 ILE 195 PHE 196 ASP 197 VAL 198 THR 199 HIS 200 SER 201 LEU 202 GLN 203 CYS 204 ARG 205 ASP 206 PRO 207 LEU 208 GLY 209 ASP 210 ALA 211 SER 212 GLY 213 GLY 214 ARG 215 ARG 216 ARG 217 GLN 218 VAL 219 LEU 220 ASP 221 LEU 222 ALA 223 ARG 224 ALA 225 GLY 226 ILE 227 ALA 228 VAL 229 GLY 230 ILE 231 ALA 232 GLY 233 LEU 234 PHE 235 LEU 236 GLU 237 ALA 238 HIS 239 PRO 240 ASP 241 PRO 242 ASP 243 ARG 244 ALA 245 ARG 246 CYS 247 ASP 248 GLY 249 PRO 250 SER 251 ALA 252 LEU 253 PRO 254 LEU 255 HIS 256 GLN 257 LEU 258 GLU 259 GLY 260 LEU 261 LEU 262 SER 263 GLN 264 MET 265 LYS 266 ALA 267 ILE 268 ASP 269 ASP 270 LEU 271 VAL 272 LYS 273 ARG 274 MET 275 PRO 276 ALA 277 LEU 278 GLU 279 ILE 280
Unit 2	SER 0 MET 1 ASN 2 VAL 3 ALA 4 ILE 5 SER 6 PRO 7 GLY 8 VAL 9 THR 10 ALA 11 GLY 12 ASN 13 SER 14 LEU 15 PRO 16 PHE 17 VAL 18 LEU 19 PHE 20 GLY 21 GLY 22 ILE 23 ASN 24 VAL 25 LEU 26 GLU 27 SER 28 LEU 29 ASP 30 PHE 31 THR 32 LEU 33 ASP 34 VAL 35 CYS 36 GLY 37 GLU 38 TYR 39 VAL 40 ALA 41 VAL 42 THR 43 ARG 44 LYS 45 LEU 46 GLY 47 ILE 48 PRO 49 PHE 50 VAL 51 PHE 52 LYS 53 ALA 54 SER 55 PHE 56 ASP 57 LYS 58 ALA 59 ASN 60 ARG 61 SER 62 SER 63 ILE 64 HIS 65 SER 66 TYR 67 ARG 68 GLY 69 VAL 70 GLY 71 LEU 72 ASP 73 GLU 74 GLY 75 LEU 76 LYS 77 ILE 78 PHE 79 ALA 80 GLU 81 VAL 82 LYS 83 ALA 84 ARG 85 PHE 86 GLY 87 VAL 88 PRO 89 VAL 90 ILE 91 THR 92 ASP 93 VAL 94 HIS 95 GLU 96 ALA 97 GLU 98 GLN 99 ALA 100 ALA 101 PRO 102 VAL 103 ALA 104 GLU 105 ILE 106 ALA 107 ASP 108 VAL 109 LEU 110 GLN 111 VAL 112 PRO 113 ALA 114 PHE 115 LEU 116 ALA 117 ARG 118 GLN 119 THR 120 ASP 121 LEU 122 VAL 123 VAL 124 ALA 125 ILE 126 ALA 127 LYS 128 ALA 129 GLY 130 LYS 131 PRO 132 VAL 133 ASN 134 VAL 135 LYS 136 LYS 137 PRO 138 GLN 139 PHE 140 MET 141 SER 142 PRO 143 THR 144 GLN 145 LEU 146 LYS 147 HIS 148 VAL 149 VAL 150 SER 151 LYS 152 CYS 153 GLY 154 GLU 155 VAL 156 GLY 157 ASN 158 ASP 159 ARG 160 VAL 161 MET 162 LEU 163 CYS 164 GLU 165 ARG 166 GLY 167 SER 168 SER 169 PHE 170 GLY 171 TYR 172 ASP 173 ASN 174 LEU 175 VAL 176 VAL 177 ASP 178 MET 179 LEU 180 GLY 181 PHE 182 ARG 183 GLN 184 MET 185 ALA 186 GLU 187 THR 188 THR 189 GLY 190 GLY 191 CYS 192 PRO 193 VAL 194 ILE 195 PHE 196 ASP 197 VAL 198 THR 199 HIS 200 SER 201 LEU 202 GLN 203 CYS 204 ARG 205 ASP 206 PRO 207 ARG 217 GLN 218 VAL 219 LEU 220 ASP 221 LEU 222 ALA 223 ARG 224 ALA 225 GLY 226 ILE 227 ALA 228 VAL 229 GLY 230 ILE 231 ALA 232 GLY 233 LEU 234 PHE 235 LEU 236 GLU 237 ALA 238 HIS 239 PRO 240 ASP 241 PRO 242 ASP 243 ARG 244 ALA 245 ARG 246 CYS 247 SER 251 ALA 252 LEU 253 PRO 254 LEU 255 HIS 256 GLN 257 LEU 258 GLU 259 GLY 260 LEU 261 LEU 262 SER 263 GLN 264 MET 265 LYS 266 ALA 267 ILE 268 ASP 269 ASP 270 LEU 271 VAL 272 LYS 273 ARG 274 MET 275 PRO 276 ALA 277 LEU 278 GLU 279 ILE 280 ARG 281
Unit 3	SER 0 MET 1 ASN 2 VAL 3 ALA 4 ILE 5 SER 6 PRO 7 GLY 8 VAL 9 THR 10 ALA 11 GLY 12 ASN 13 SER 14 LEU 15 PRO 16 PHE 17 VAL 18 LEU 19 PHE 20 GLY 21 GLY 22 ILE 23 ASN 24 VAL 25 LEU 26 GLU 27 SER 28 LEU 29 ASP 30 PHE 31 THR 32 LEU 33 ASP 34 VAL 35 CYS 36 GLY 37 GLU 38 TYR 39 VAL 40 ALA 41 VAL 42 THR 43 ARG 44 LYS 45 LEU 46 GLY 47 ILE 48 PRO 49 PHE 50 VAL 51 PHE 52 LYS 53 ALA 54 SER 55 PHE 56 ASP 57 LYS 58 ALA 59 ASN 60 ARG 61 SER 62 SER 63 ILE 64 HIS 65 SER 66 TYR 67 ARG 68 GLY 69 VAL 70 GLY 71 LEU 72 ASP 73 GLU 74 GLY 75 LEU 76 LYS 77 ILE 78 PHE 79 ALA 80 GLU 81 VAL 82 LYS 83 ALA 84 ARG 85 PHE 86 GLY 87 VAL 88 PRO 89 VAL 90 ILE 91 THR 92 ASP 93 VAL 94 HIS 95 GLU 96 ALA 97 GLU 98 GLN 99 ALA 100 ALA 101 PRO 102 VAL 103 ALA 104 GLU 105 ILE 106 ALA 107 ASP 108 VAL 109 LEU 110 GLN 111 VAL 112 PRO 113 ALA 114 PHE 115 LEU 116 ALA 117 ARG 118 GLN 119 THR 120 ASP 121 LEU 122 VAL 123 VAL 124 ALA 125 ILE 126 ALA 127 LYS 128 ALA 129 GLY 130 LYS 131 PRO 132 VAL 133 ASN 134 VAL 135 LYS 136 LYS 137 PRO 138 GLN 139 PHE 140 MET 141 SER 142 PRO 143 THR 144 GLN 145 LEU 146 LYS 147 HIS 148 VAL 149 VAL 150 SER 151 LYS 152 CYS 153 GLY 154 GLU 155 VAL 156 GLY 157 ASN 158 ASP 159 ARG 160 VAL 161 MET 162 LEU 163 CYS 164 GLU 165 ARG 166 GLY 167 SER 168 SER 169 PHE 170 GLY 171 TYR 172 ASP 173 ASN 174 LEU 175 VAL 176 VAL 177 ASP 178 MET 179 LEU 180 GLY 181 PHE 182 ARG 183 GLN 184 MET 185 ALA 186 GLU 187 THR 188 THR 189 GLY 190 GLY 191 CYS 192 PRO 193 VAL 194 ILE 195 PHE 196 ASP 197 VAL 198 THR 199 HIS 200 SER 201 LEU 202 GLN 203 CYS 204 ARG 205 ASP 206 PRO 207 LEU 208 GLY 209 ASP 210 ALA 211 SER 212 GLY 213 GLY 214 ARG 215 ARG 216 ARG 217 GLN 218 VAL 219 LEU 220 ASP 221 LEU 222 ALA 223 ARG 224 ALA 225 GLY 226 ILE 227 ALA 228 VAL 229 GLY 230 ILE 231 ALA 232 GLY 233 LEU 234 PHE 235 LEU 236 GLU 237 ALA 238 HIS 239 PRO 240 ASP 241 PRO 242 ASP 243 ARG 244 ALA 245 ARG 246 CYS 247 ASP 248 GLY 249 PRO 250 SER 251 ALA 252 LEU 253 PRO 254 LEU 255 HIS 256 GLN 257 LEU 258 GLU 259 GLY 260 LEU 261 LEU 262 SER 263 GLN 264 MET 265 LYS 266 ALA 267 ILE 268 ASP 269 ASP 270 LEU 271 VAL 272 LYS 273 ARG 274 MET 275 PRO 276 ALA 277 LEU 278 GLU 279 ILE 280
Unit 4	MET 1 ASN 2 VAL 3 ALA 4 ILE 5 SER 6 PRO 7 GLY 8 VAL 9 THR 10 ALA 11 GLY 12 ASN 13 SER 14 LEU 15 PRO 16 PHE 17 VAL 18 LEU 19 PHE 20 GLY 21 GLY 22 ILE 23 ASN 24 VAL 25 LEU 26 GLU 27 SER 28 LEU 29 ASP 30 PHE 31 THR 32 LEU 33 ASP 34 VAL 35 CYS 36 GLY 37 GLU 38 TYR 39 VAL 40 ALA 41 VAL 42 THR 43 ARG 44 LYS 45 LEU 46 GLY 47 ILE 48 PRO 49 PHE 50 VAL 51 PHE 52 LYS 53 ALA 54 SER 55 PHE 56 ASP 57 LYS 58 ALA 59 ASN 60 ARG 61 SER 62 SER 63 ILE 64 HIS 65 SER 66 TYR 67 ARG 68 GLY 69 VAL 70 GLY 71 LEU 72 ASP 73 GLU 74 GLY 75 LEU 76 LYS 77 ILE 78 PHE 79 ALA 80 GLU 81 VAL 82 LYS 83 ALA 84 ARG 85 PHE 86 GLY 87 VAL 88 PRO 89 VAL 90 ILE 91 THR 92 ASP 93 VAL 94 HIS 95 GLU 96 ALA 97 GLU 98 GLN 99 ALA 100 ALA 101 PRO 102 VAL 103 ALA 104 GLU 105 ILE 106 ALA 107 ASP 108 VAL 109 LEU 110 GLN 111 VAL 112 PRO 113 ALA 114 PHE 115 LEU 116 ALA 117 ARG 118 GLN 119 THR 120 ASP 121 LEU 122 VAL 123 VAL 124 ALA 125 ILE 126 ALA 127 LYS 128 ALA 129 GLY 130 LYS 131 PRO 132 VAL 133 ASN 134 VAL 135 LYS 136 LYS 137 PRO 138 GLN 139 PHE 140 MET 141 SER 142 PRO 143 THR 144 GLN 145 LEU 146 LYS 147 HIS 148 VAL 149 VAL 150 SER 151 LYS 152 CYS 153 GLY 154 GLU 155 VAL 156 GLY 157 ASN 158 ASP 159 ARG 160 VAL 161 MET 162 LEU 163 CYS 164 GLU 165 ARG 166 GLY 167 SER 168 SER 169 PHE 170 GLY 171 TYR 172 ASP 173 ASN 174 LEU 175 VAL 176 VAL 177 ASP 178 MET 179 LEU 180 GLY 181 PHE 182 ARG 183 GLN 184 MET 185 ALA 186 GLU 187 THR 188 THR 189 GLY 190 GLY 191 CYS 192 PRO 193 VAL 194 ILE 195 PHE 196 ASP 197 VAL 198 THR 199 HIS 200 SER 201 LEU 202 GLN 203 CYS 204 ARG 205 ARG 217 GLN 218 VAL 219 LEU 220 ASP 221 LEU 222 ALA 223 ARG 224 ALA 225 GLY 226 ILE 227 ALA 228 VAL 229 GLY 230 ILE 231 ALA 232 GLY 233 LEU 234 PHE 235 LEU 236 GLU 237 ALA 238 HIS 239 PRO 240 ASP 241 PRO 242 ASP 243 ARG 244 SER 251 ALA 252 LEU 253 PRO 254 LEU 255 HIS 256 GLN 257 LEU 258 GLU 259 GLY 260 LEU 261 LEU 262 SER 263 GLN 264 MET 265 LYS 266 ALA 267 ILE 268 ASP 269 ASP 270 LEU 271 VAL 272 LYS 273 ARG 274 MET 275 PRO 276 ALA 277 LEU 278 GLU 279 ILE 280 ARG 281

Ligands

Unit 5	A5P 282 NO3 283 NO3 284 NO3 285 EDO 286
Unit 6	NO3 282 NO3 283 EDO 284 EDO 285
Unit 7	A5P 282 NO3 283 NO3 284 NO3 285 NO3 286 EDO 287
Unit 8	NO3 282 EDO 283